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PMC:1448208 / 36410-37391 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T20779 980-981 . denotes .
T20778 970-975 JJ denotes human
T20777 976-980 NN denotes MSUD
T20776 961-969 VBG denotes modeling
T20775 957-960 IN denotes for
T20774 945-956 JJ denotes appropriate
T20773 941-944 CC denotes and
T20772 935-940 JJ denotes valid
T20771 930-934 RBR denotes more
T20770 919-925 NN denotes report
T20769 914-918 DT denotes this
T20768 911-913 IN denotes in
T20767 901-910 VBN denotes described
T20766 887-893 JJ denotes murine
T20765 894-900 NNS denotes models
T20764 883-886 DT denotes the
T20763 881-883 , denotes ,
T20762 873-881 NN denotes contrast
T20761 926-929 VBP denotes are
T20760 870-872 IN denotes In
T20759 869-981 sentence denotes In contrast, the murine models described in this report are more valid and appropriate for modeling human MSUD.
T20758 868-869 . denotes .
T20757 861-868 NN denotes utility
T20756 853-860 JJ denotes limited
T20755 850-852 IN denotes of
T20754 845-849 RB denotes also
T20753 836-841 NN denotes model
T20752 831-835 DT denotes this
T20751 829-831 , denotes ,
T20750 828-829 -RRB- denotes ]
T20749 827-828 CD denotes 1
T20748 826-827 -LRB- denotes [
T20747 819-825 NNS denotes humans
T20746 814-818 NN denotes MSUD
T20745 810-813 CC denotes and
T20744 800-803 NN denotes cow
T20743 795-799 NN denotes MSUD
T20742 804-809 NN denotes model
T20741 791-794 DT denotes the
T20740 783-790 IN denotes between
T20739 771-782 NNS denotes differences
T20738 768-770 IN denotes of
T20737 756-767 NN denotes observation
T20736 752-755 DT denotes the
T20735 749-751 IN denotes to
T20734 745-748 IN denotes due
T20733 741-744 CC denotes and
T20732 728-734 NN denotes animal
T20731 722-727 JJ denotes large
T20730 720-721 DT denotes a
T20729 735-740 NN denotes model
T20728 715-719 JJ denotes such
T20727 712-714 IN denotes by
T20726 704-711 VBN denotes imposed
T20725 692-703 NNS denotes constraints
T20724 682-691 JJ denotes practical
T20723 679-681 IN denotes to
T20722 675-678 IN denotes due
T20721 673-675 , denotes ,
T20720 842-844 VBZ denotes is
T20719 666-673 RB denotes However
T20718 665-869 sentence denotes However, due to practical constraints imposed by such a large animal model and due to the observation of differences between the MSUD cow model and MSUD humans [1], this model is also of limited utility.
T20717 664-665 . denotes .
T20716 663-664 -RRB- denotes ]
T20715 661-663 CD denotes 19
T20714 660-661 SYM denotes -
T20713 658-660 CD denotes 17
T20712 657-658 -LRB- denotes [
T20711 636-646 RB denotes previously
T20710 631-635 VBN denotes been
T20709 626-630 RB denotes also
T20708 622-625 VBZ denotes has
T20707 617-621 NN denotes MSUD
T20706 614-616 IN denotes of
T20705 604-607 NN denotes cow
T20704 608-613 NN denotes model
T20703 602-603 DT denotes a
T20702 600-602 , denotes ,
T20701 589-594 NN denotes mouse
T20700 595-600 NN denotes model
T20699 584-588 DT denotes this
T20698 581-583 IN denotes to
T20697 572-580 NN denotes addition
T20696 647-656 VBN denotes described
T20695 569-571 IN denotes In
T20694 568-665 sentence denotes In addition to this mouse model, a cow model of MSUD has also been previously described [17-19].
T20693 567-568 . denotes .
T20692 557-567 NN denotes deficiency
T20691 552-556 NN denotes BCAT
T20690 549-551 IN denotes to
T20689 541-548 NN denotes disease
T20688 536-540 DT denotes this
T20687 524-535 VBG denotes attributing
T20686 509-513 VBN denotes been
T20685 505-508 VBZ denotes has
T20684 500-504 NN denotes MSUD
T20683 497-499 IN denotes of
T20682 492-496 NN denotes case
T20681 489-491 DT denotes no
T20680 487-489 , denotes ,
T20674 458-463 NN denotes BCKDH
T20673 455-457 IN denotes of
T20672 464-467 VBP denotes are
T20671 448-454 NNS denotes levels
T20670 444-447 DT denotes the
T20669 440-443 CC denotes and
T20668 434-439 NN denotes BCKDH
T20667 431-433 IN denotes in
T20666 427-430 RB denotes not
T20665 415-423 NN denotes mutation
T20664 411-414 DT denotes the
T20663 424-426 VBZ denotes is
T20662 403-410 IN denotes because
T20661 398-402 NN denotes MSUD
T20660 395-397 IN denotes of
T20659 384-388 JJ denotes true
T20658 389-394 NN denotes model
T20657 382-383 DT denotes a
T20656 378-381 RB denotes not
T20655 372-374 PRP denotes it
T20654 370-372 , denotes ,
T20653 353-364 JJ denotes interesting
T20652 365-370 NN denotes model
T20651 350-352 DT denotes an
T20650 375-377 VBZ denotes is
T20649 342-346 DT denotes this
T20648 347-349 VBZ denotes is
T20647 336-341 IN denotes While
T20646 335-475 sentence denotes While this is an interesting model, it is not a true model of MSUD because the mutation is not in BCKDH and the levels of BCKDH are normal.
T20645 334-335 . denotes .
T20644 326-334 JJ denotes elevated
T20643 317-325 RB denotes markedly
T20642 300-304 NN denotes BCAA
T20641 294-299 NN denotes blood
T20640 305-311 NNS denotes levels
T20639 290-293 DT denotes the
T20638 283-289 IN denotes though
T20637 312-316 VBD denotes were
T20636 278-282 RB denotes even
T20635 271-277 JJ denotes normal
T20634 261-266 NN denotes mouse
T20633 256-260 DT denotes this
T20632 253-255 IN denotes of
T20631 246-252 NN denotes muscle
T20630 242-245 CC denotes and
T20629 236-241 NN denotes liver
T20628 232-235 DT denotes the
T20627 229-231 IN denotes in
T20626 267-270 VBD denotes was
T20625 214-219 NN denotes BCKDH
T20624 220-228 NN denotes activity
T20623 210-213 DT denotes The
T20622 209-335 sentence denotes The BCKDH activity in the liver and muscle of this mouse was normal even though the blood BCAA levels were markedly elevated.
T20621 208-209 . denotes .
T20620 207-208 -RRB- denotes ]
T20619 205-207 CD denotes 20
T20618 204-205 -LRB- denotes [
T20617 194-198 NN denotes BCAT
T20616 180-193 JJ denotes mitochondrial
T20615 199-203 NN denotes gene
T20614 176-179 DT denotes the
T20613 165-175 VBG denotes disrupting
T20612 162-164 IN denotes by
T20611 143-153 RB denotes previously
T20610 139-142 VBD denotes was
T20609 134-138 NN denotes MSUD
T20608 128-133 JJ denotes human
T20607 117-127 VBG denotes resembling
T20606 154-161 VBN denotes created
T20605 107-110 NN denotes ENU
T20604 111-116 NN denotes mouse
T20603 104-106 DT denotes An
T20602 103-209 sentence denotes An ENU mouse resembling human MSUD was previously created by disrupting the mitochondrial BCAT gene [20].
T20601 102-103 . denotes .
T20600 86-95 VBN denotes described
T20599 75-85 RB denotes previously
T20598 96-102 NNS denotes models
T20597 71-74 DT denotes the
T20596 66-70 IN denotes over
T20595 57-65 NNS denotes advances
T20594 47-56 JJ denotes important
T20593 29-42 NN denotes communication
T20592 24-28 DT denotes this
T20591 21-23 IN denotes in
T20590 11-20 VBN denotes described
T20589 43-46 VBP denotes are
T20588 4-10 NNS denotes models
T20587 0-3 DT denotes The
T20679 514-523 VBN denotes described
T20678 476-487 RB denotes Furthermore
T20677 475-568 sentence denotes Furthermore, no case of MSUD has been described attributing this disease to BCAT deficiency.
T20676 474-475 . denotes .
T20675 468-474 JJ denotes normal
R5667 T20587 T20588 det The,models
R5668 T20588 T20589 nsubj models,are
R5669 T20590 T20588 acl described,models
R5670 T20591 T20590 prep in,described
R5671 T20592 T20593 det this,communication
R5672 T20593 T20591 pobj communication,in
R5673 T20594 T20595 amod important,advances
R5674 T20595 T20589 attr advances,are
R5675 T20596 T20595 prep over,advances
R5676 T20597 T20598 det the,models
R5677 T20598 T20596 pobj models,over
R5678 T20599 T20600 advmod previously,described
R5679 T20600 T20598 amod described,models
R5680 T20601 T20589 punct .,are
R5681 T20603 T20604 det An,mouse
R5682 T20604 T20606 nsubjpass mouse,created
R5683 T20605 T20604 compound ENU,mouse
R5684 T20607 T20604 acl resembling,mouse
R5685 T20608 T20609 amod human,MSUD
R5686 T20609 T20607 dobj MSUD,resembling
R5687 T20610 T20606 auxpass was,created
R5688 T20611 T20606 advmod previously,created
R5689 T20612 T20606 prep by,created
R5690 T20613 T20612 pcomp disrupting,by
R5691 T20614 T20615 det the,gene
R5692 T20615 T20613 dobj gene,disrupting
R5693 T20616 T20615 amod mitochondrial,gene
R5694 T20617 T20615 compound BCAT,gene
R5695 T20618 T20619 punct [,20
R5696 T20619 T20606 parataxis 20,created
R5697 T20620 T20619 punct ],20
R5698 T20621 T20606 punct .,created
R5699 T20623 T20624 det The,activity
R5700 T20624 T20626 nsubj activity,was
R5701 T20625 T20624 compound BCKDH,activity
R5702 T20627 T20624 prep in,activity
R5703 T20628 T20629 det the,liver
R5704 T20629 T20627 pobj liver,in
R5705 T20630 T20629 cc and,liver
R5706 T20631 T20629 conj muscle,liver
R5707 T20632 T20629 prep of,liver
R5708 T20633 T20634 det this,mouse
R5709 T20634 T20632 pobj mouse,of
R5710 T20635 T20626 acomp normal,was
R5711 T20636 T20637 advmod even,were
R5712 T20637 T20626 advcl were,was
R5713 T20638 T20637 mark though,were
R5714 T20639 T20640 det the,levels
R5715 T20640 T20637 nsubj levels,were
R5716 T20641 T20640 compound blood,levels
R5717 T20642 T20640 compound BCAA,levels
R5718 T20643 T20644 advmod markedly,elevated
R5719 T20644 T20637 acomp elevated,were
R5720 T20645 T20626 punct .,was
R5721 T20647 T20648 mark While,is
R5722 T20648 T20650 advcl is,is
R5723 T20649 T20648 nsubj this,is
R5724 T20651 T20652 det an,model
R5725 T20652 T20648 attr model,is
R5726 T20653 T20652 amod interesting,model
R5727 T20654 T20650 punct ", ",is
R5728 T20655 T20650 nsubj it,is
R5729 T20656 T20650 neg not,is
R5730 T20657 T20658 det a,model
R5731 T20658 T20650 attr model,is
R5732 T20659 T20658 amod true,model
R5733 T20660 T20658 prep of,model
R5734 T20661 T20660 pobj MSUD,of
R5735 T20662 T20663 mark because,is
R5736 T20663 T20650 advcl is,is
R5737 T20664 T20665 det the,mutation
R5738 T20665 T20663 nsubj mutation,is
R5739 T20666 T20663 neg not,is
R5740 T20667 T20663 prep in,is
R5741 T20668 T20667 pobj BCKDH,in
R5742 T20669 T20663 cc and,is
R5743 T20670 T20671 det the,levels
R5744 T20671 T20672 nsubj levels,are
R5745 T20672 T20663 conj are,is
R5746 T20673 T20671 prep of,levels
R5747 T20674 T20673 pobj BCKDH,of
R5748 T20675 T20672 acomp normal,are
R5749 T20676 T20650 punct .,is
R5750 T20678 T20679 advmod Furthermore,described
R5751 T20680 T20679 punct ", ",described
R5752 T20681 T20682 det no,case
R5753 T20682 T20679 nsubjpass case,described
R5754 T20683 T20682 prep of,case
R5772 T20684 T20683 pobj MSUD,of
R5774 T20685 T20679 aux has,described
R5775 T20686 T20679 auxpass been,described
R5777 T20687 T20679 advcl attributing,described
R5778 T20688 T20689 det this,disease
R5780 T20689 T20687 dobj disease,attributing
R5781 T20690 T20687 prep to,attributing
R5782 T20691 T20692 compound BCAT,deficiency
R5784 T20692 T20690 pobj deficiency,to
R5785 T20693 T20679 punct .,described
R5787 T20695 T20696 prep In,described
R5789 T20697 T20695 pobj addition,In
R5790 T20698 T20697 prep to,addition
R5792 T20699 T20700 det this,model
R5793 T20700 T20698 pobj model,to
R5794 T20701 T20700 compound mouse,model
R5795 T20702 T20696 punct ", ",described
R5797 T20703 T20704 det a,model
R5798 T20704 T20696 nsubjpass model,described
R5799 T20705 T20704 compound cow,model
R5800 T20706 T20704 prep of,model
R5801 T20707 T20706 pobj MSUD,of
R5802 T20708 T20696 aux has,described
R5804 T20709 T20696 advmod also,described
R5805 T20710 T20696 auxpass been,described
R5806 T20711 T20696 advmod previously,described
R5808 T20712 T20713 punct [,17
R5809 T20713 T20696 parataxis 17,described
R5810 T20714 T20715 punct -,19
R5812 T20715 T20713 prep 19,17
R5813 T20716 T20713 punct ],17
R5814 T20717 T20696 punct .,described
R5816 T20719 T20720 advmod However,is
R5818 T20721 T20720 punct ", ",is
R5819 T20722 T20720 prep due,is
R5820 T20723 T20722 pcomp to,due
R5821 T20724 T20725 amod practical,constraints
R5823 T20725 T20722 pobj constraints,due
R5824 T20726 T20725 acl imposed,constraints
R5826 T20727 T20726 agent by,imposed
R5827 T20728 T20729 amod such,model
R5828 T20729 T20727 pobj model,by
R5830 T20730 T20729 det a,model
R5831 T20731 T20729 amod large,model
R5832 T20732 T20729 compound animal,model
R5834 T20733 T20722 cc and,due
R5835 T20734 T20722 conj due,due
R5836 T20735 T20734 pcomp to,due
R5838 T20736 T20737 det the,observation
R5839 T20737 T20734 pobj observation,due
R5840 T20738 T20737 prep of,observation
R5842 T20739 T20738 pobj differences,of
R5843 T20740 T20739 prep between,differences
R5845 T20741 T20742 det the,model
R5846 T20742 T20740 pobj model,between
R5848 T20743 T20742 compound MSUD,model
R5849 T20744 T20742 compound cow,model
R5850 T20745 T20742 cc and,model
R5851 T20746 T20747 compound MSUD,humans
R5852 T20747 T20742 conj humans,model
R5853 T20748 T20749 punct [,1
R5854 T20749 T20734 parataxis 1,due
R5856 T20750 T20749 punct ],1
R5857 T20751 T20720 punct ", ",is
R5858 T20752 T20753 det this,model
R5860 T20753 T20720 nsubj model,is
R5861 T20754 T20720 advmod also,is
R5862 T20755 T20720 prep of,is
R5864 T20756 T20757 amod limited,utility
R5866 T20757 T20755 pobj utility,of
R5867 T20758 T20720 punct .,is
R5868 T20760 T20761 prep In,are
R5870 T20762 T20760 pobj contrast,In
R5871 T20763 T20761 punct ", ",are
R5873 T20764 T20765 det the,models
R5874 T20765 T20761 nsubj models,are
R5875 T20766 T20765 amod murine,models
R5877 T20767 T20765 acl described,models
R5878 T20768 T20767 prep in,described
R5879 T20769 T20770 det this,report
R5881 T20770 T20768 pobj report,in
R5882 T20771 T20772 advmod more,valid
R5883 T20772 T20761 acomp valid,are
R5885 T20773 T20772 cc and,valid
R5886 T20774 T20772 conj appropriate,valid
R5887 T20775 T20774 prep for,appropriate
R5889 T20776 T20777 amod modeling,MSUD
R5890 T20777 T20775 pobj MSUD,for
R5891 T20778 T20777 amod human,MSUD
R5893 T20779 T20761 punct .,are

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19786 970-975 NCBITaxon:9606 denotes human
T19785 887-893 NCBITaxon:39107 denotes murine
T19784 819-825 NCBITaxon:9606 denotes humans
T19783 800-803 NCBITaxon:9913 denotes cow
T19782 728-734 NCBITaxon:33208 denotes animal
T19781 604-607 NCBITaxon:9913 denotes cow
T19780 589-594 NCBITaxon:10088 denotes mouse
T19779 552-556 GO_PR_EXT:branched_chain_amino_acid_aminotransferase denotes BCAT
T19778 415-423 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T19777 300-304 CHEBI:22918 denotes BCAA
T19776 294-299 UBERON:0000178 denotes blood
T19775 261-266 NCBITaxon:10088 denotes mouse
T19774 246-252 UBERON_EXT:muscle_structure_or_tissue denotes muscle
T19773 236-241 UBERON:0002107 denotes liver
T19772 199-203 SO_EXT:0000704 denotes gene
T19771 194-198 GO_PR_EXT:branched_chain_amino_acid_aminotransferase denotes BCAT
T19770 180-198 PR_EXT:000004683 denotes mitochondrial BCAT
T19769 180-193 GO:0005739 denotes mitochondrial
T19768 128-133 NCBITaxon:9606 denotes human
T19767 111-116 NCBITaxon:10088 denotes mouse
T19766 107-110 CHEBI:23995 denotes ENU

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19621 970-975 NCBITaxon:9606 denotes human
T19620 887-893 NCBITaxon:39107 denotes murine
T19619 819-825 NCBITaxon:9606 denotes humans
T19618 800-803 NCBITaxon:9913 denotes cow
T19617 728-734 NCBITaxon:33208 denotes animal
T19616 604-607 NCBITaxon:9913 denotes cow
T19615 589-594 NCBITaxon:10088 denotes mouse
T19614 300-304 CHEBI:22918 denotes BCAA
T19613 294-299 UBERON:0000178 denotes blood
T19612 261-266 NCBITaxon:10088 denotes mouse
T19611 236-241 UBERON:0002107 denotes liver
T19610 199-203 SO:0000704 denotes gene
T19609 180-198 PR:000004683 denotes mitochondrial BCAT
T19608 180-193 GO:0005739 denotes mitochondrial
T19607 128-133 NCBITaxon:9606 denotes human
T19606 111-116 NCBITaxon:10088 denotes mouse
T19605 107-110 CHEBI:23995 denotes ENU