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PMC:1447668 / 42657-43018 JSONTXT

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bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18701 116-120 Protein denotes CD4+
T18702 283-288 Protein denotes NF-κB
T18703 296-300 Protein denotes CREB
T18704 332-337 Protein denotes Foxp3
T18705 301-311 Positive_regulation denotes activation
T18706 301-311 Positive_regulation denotes activation
T18707 324-331 Negative_regulation denotes inhibit
T18708 324-331 Negative_regulation denotes inhibit
T18709 338-348 Gene_expression denotes expression
T18710 324-331 Negative_regulation denotes inhibit
R14084 T18702 T18705 themeOf NF-κB,activation
R14085 T18703 T18706 themeOf CREB,activation
R14086 T18704 T18709 themeOf Foxp3,expression
R14087 T18705 T18707 themeOf activation,inhibit
R14088 T18706 T18708 themeOf activation,inhibit
R14089 T18709 T18710 themeOf expression,inhibit

sentences

Id Subject Object Predicate Lexical cue
T14437 0-361 Sentence denotes However, observing that this inhibitory effect is not absolute, a low level of viral gene expression may persist in CD4+ T cells (in particular regulatory T cells, which are known reservoirs of HIV-1 and HTLV-I) and result in the accumulation of viral proteins that either stimulate NF-κB and/or CREB activation or directly inhibit Foxp3 expression or function.
T234 0-361 Sentence denotes However, observing that this inhibitory effect is not absolute, a low level of viral gene expression may persist in CD4+ T cells (in particular regulatory T cells, which are known reservoirs of HIV-1 and HTLV-I) and result in the accumulation of viral proteins that either stimulate NF-κB and/or CREB activation or directly inhibit Foxp3 expression or function.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17261 0-7 RB denotes However
T17262 7-8 -COMMA- denotes ,
T17263 9-18 VB denotes observing
T17264 19-23 IN denotes that
T17265 24-28 DT denotes this
T17266 29-39 JJ denotes inhibitory
T17267 40-46 NN denotes effect
T17268 47-49 VB denotes is
T17269 50-53 RB denotes not
T17270 54-62 JJ denotes absolute
T17271 62-63 -COMMA- denotes ,
T17272 64-65 DT denotes a
T17273 66-69 JJ denotes low
T17274 70-75 NN denotes level
T17275 76-78 IN denotes of
T17276 79-84 JJ denotes viral
T17277 85-89 NN denotes gene
T17278 90-100 NN denotes expression
T17279 101-104 MD denotes may
T17280 105-112 VB denotes persist
T17281 113-115 IN denotes in
T17282 116-120 JJ denotes CD4+
T17283 121-122 NN denotes T
T17284 123-128 NN denotes cells
T17285 129-130 -LRB- denotes (
T17286 130-132 IN denotes in
T17287 133-143 JJ denotes particular
T17288 144-154 JJ denotes regulatory
T17289 155-156 NN denotes T
T17290 157-162 NN denotes cells
T17291 162-163 -COMMA- denotes ,
T17292 164-169 WDT denotes which
T17293 170-173 VB denotes are
T17294 174-179 VB denotes known
T17295 180-190 NN denotes reservoirs
T17296 191-193 IN denotes of
T17297 194-199 NN denotes HIV-1
T17298 200-203 CC denotes and
T17299 204-210 NN denotes HTLV-I
T17300 210-211 -RRB- denotes )
T17301 212-215 CC denotes and
T17302 216-222 VB denotes result
T17303 223-225 IN denotes in
T17304 226-229 DT denotes the
T17305 230-242 NN denotes accumulation
T17306 243-245 IN denotes of
T17307 246-251 JJ denotes viral
T17308 252-260 NN denotes proteins
T17309 261-265 WDT denotes that
T17310 266-272 CC denotes either
T17311 273-282 VB denotes stimulate
T17312 283-288 NN denotes NF-κB
T17313 289-295 CC denotes and/or
T17314 296-300 NN denotes CREB
T17315 301-311 NN denotes activation
T17316 312-314 CC denotes or
T17317 315-323 RB denotes directly
T17318 324-331 VB denotes inhibit
T17319 332-337 NN denotes Foxp3
T17320 338-348 NN denotes expression
T17321 349-351 CC denotes or
T17322 352-360 NN denotes function
R13381 T17267 T17265 arg1Of effect,this
R13382 T17267 T17266 arg1Of effect,inhibitory
R13383 T17267 T17268 arg1Of effect,is
R13384 T17267 T17270 arg1Of effect,absolute
R13385 T17268 T17263 arg2Of is,observing
R13386 T17268 T17264 arg1Of is,that
R13387 T17268 T17269 arg1Of is,not
R13388 T17270 T17268 arg2Of absolute,is
R13392 T17274 T17263 arg1Of level,observing
R13393 T17274 T17272 arg1Of level,a
R13394 T17274 T17273 arg1Of level,low
R13395 T17274 T17275 arg1Of level,of
R13396 T17274 T17279 arg1Of level,may
R13397 T17274 T17280 arg1Of level,persist
R13398 T17274 T17302 arg1Of level,result
R13400 T17278 T17275 arg2Of expression,of
R13401 T17278 T17276 arg1Of expression,viral
R13402 T17278 T17277 arg1Of expression,gene
R13403 T17280 T17279 arg2Of persist,may
R13404 T17280 T17281 arg1Of persist,in
R13405 T17280 T17301 arg1Of persist,and
R13408 T17284 T17281 arg2Of cells,in
R13409 T17284 T17282 arg1Of cells,CD4+
R13410 T17284 T17283 arg1Of cells,T
R13411 T17284 T17285 arg1Of cells,(
R13413 T17287 T17286 arg2Of particular,in
R13415 T17290 T17285 arg2Of cells,(
R13416 T17290 T17286 arg1Of cells,in
R13417 T17290 T17288 arg1Of cells,regulatory
R13418 T17290 T17289 arg1Of cells,T
R13419 T17290 T17291 arg1Of cells,","
R13420 T17290 T17292 arg1Of cells,which
R13421 T17290 T17293 arg1Of cells,are
R13424 T17295 T17293 arg2Of reservoirs,are
R13425 T17295 T17294 arg2Of reservoirs,known
R13426 T17295 T17296 arg1Of reservoirs,of
R13427 T17297 T17298 arg1Of HIV-1,and
R13428 T17298 T17296 arg2Of and,of
R13429 T17299 T17298 arg2Of HTLV-I,and
R13430 T17300 T17285 arg3Of ),(
R13431 T17301 T17261 arg1Of and,However
R13432 T17301 T17262 arg1Of and,","
R13433 T17301 T17263 modOf and,observing
R13434 T17301 T17271 arg1Of and,","
R13435 T17302 T17301 arg2Of result,and
R13436 T17302 T17303 arg1Of result,in
R13438 T17305 T17303 arg2Of accumulation,in
R13439 T17305 T17304 arg1Of accumulation,the
R13440 T17305 T17306 arg1Of accumulation,of
R13443 T17308 T17306 arg2Of proteins,of
R13444 T17308 T17307 arg1Of proteins,viral
R13445 T17308 T17309 arg1Of proteins,that
R13446 T17308 T17311 arg1Of proteins,stimulate
R13447 T17308 T17318 arg1Of proteins,inhibit
R13448 T17311 T17316 arg1Of stimulate,or
R13449 T17312 T17313 arg1Of NF-κB,and/or
R13452 T17314 T17313 arg2Of CREB,and/or
R13453 T17315 T17311 arg2Of activation,stimulate
R13454 T17315 T17312 arg1Of activation,NF-κB
R13455 T17315 T17314 arg1Of activation,CREB
R13456 T17316 T17310 arg1Of or,either
R13459 T17318 T17316 arg2Of inhibit,or
R13460 T17318 T17317 arg1Of inhibit,directly
R13463 T17320 T17321 arg1Of expression,or
R13464 T17321 T17318 arg2Of or,inhibit
R13465 T17321 T17319 arg1Of or,Foxp3
R13466 T17322 T17321 arg2Of function,or

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15836 0-7 RB denotes However
T15837 7-8 , denotes ,
T15838 9-18 VBG denotes observing
T15839 19-23 IN denotes that
T15840 24-28 DT denotes this
T15841 29-39 JJ denotes inhibitory
T15842 40-46 NN denotes effect
T15843 47-49 VBZ denotes is
T15844 50-53 RB denotes not
T15845 54-62 JJ denotes absolute
T15846 62-63 , denotes ,
T15847 64-65 DT denotes a
T15848 66-69 JJ denotes low
T15849 70-75 NN denotes level
T15850 76-78 IN denotes of
T15851 79-84 JJ denotes viral
T15852 85-89 NN denotes gene
T15853 90-100 NN denotes expression
T15854 101-104 MD denotes may
T15855 105-112 VB denotes persist
T15856 113-115 IN denotes in
T15857 116-119 CD denotes CD4
T15858 119-120 CD denotes +
T15859 121-122 NNP denotes T
T15860 123-128 NNS denotes cells
T15861 129-130 -LRB- denotes (
T15862 130-132 IN denotes in
T15863 133-143 JJ denotes particular
T15864 144-154 JJ denotes regulatory
T15865 155-156 NNP denotes T
T15866 157-162 NNS denotes cells
T15867 162-163 , denotes ,
T15868 164-169 WDT denotes which
T15869 170-173 VBP denotes are
T15870 174-179 VBN denotes known
T15871 180-190 NNS denotes reservoirs
T15872 191-193 IN denotes of
T15873 194-199 NNP denotes HIV-1
T15874 200-203 CC denotes and
T15875 204-210 NNP denotes HTLV-I
T15876 210-211 -RRB- denotes )
T15877 212-215 CC denotes and
T15878 216-222 VB denotes result
T15879 223-225 IN denotes in
T15880 226-229 DT denotes the
T15881 230-242 NN denotes accumulation
T15882 243-245 IN denotes of
T15883 246-251 JJ denotes viral
T15884 252-260 NNS denotes proteins
T15885 261-265 WDT denotes that
T15886 266-272 RB denotes either
T15887 273-282 VBP denotes stimulate
T15888 283-288 NNP denotes NF-κB
T15889 289-295 CC denotes and/or
T15890 296-300 NNP denotes CREB
T15891 301-311 NN denotes activation
T15892 312-314 CC denotes or
T15893 315-323 RB denotes directly
T15894 324-331 VB denotes inhibit
T15895 332-337 JJ denotes Foxp3
T15896 338-348 NN denotes expression
T15897 349-351 CC denotes or
T15898 352-360 NN denotes function
T15899 360-361 . denotes .
R11997 T15836 T15855 advmod However,persist
R11998 T15837 T15855 punct ",",persist
R11999 T15838 T15855 advcl observing,persist
R12000 T15839 T15843 mark that,is
R12001 T15840 T15842 det this,effect
R12002 T15841 T15842 amod inhibitory,effect
R12003 T15842 T15843 nsubj effect,is
R12004 T15843 T15838 ccomp is,observing
R12005 T15844 T15843 neg not,is
R12006 T15845 T15843 acomp absolute,is
R12007 T15846 T15855 punct ",",persist
R12008 T15847 T15849 det a,level
R12009 T15848 T15849 amod low,level
R12010 T15849 T15855 nsubj level,persist
R12011 T15850 T15849 prep of,level
R12012 T15851 T15853 amod viral,expression
R12013 T15852 T15853 compound gene,expression
R12014 T15853 T15850 pobj expression,of
R12015 T15854 T15855 aux may,persist
R12016 T15855 T15855 ROOT persist,persist
R12017 T15856 T15855 prep in,persist
R12018 T15857 T15860 nummod CD4,cells
R12019 T15858 T15860 nummod +,cells
R12020 T15859 T15860 compound T,cells
R12021 T15860 T15856 pobj cells,in
R12022 T15861 T15860 punct (,cells
R12023 T15862 T15860 prep in,cells
R12024 T15863 T15866 amod particular,cells
R12025 T15864 T15866 amod regulatory,cells
R12026 T15865 T15866 compound T,cells
R12027 T15866 T15862 pobj cells,in
R12028 T15867 T15860 punct ",",cells
R12029 T15868 T15870 nsubjpass which,known
R12030 T15869 T15870 auxpass are,known
R12031 T15870 T15871 amod known,reservoirs
R12032 T15871 T15860 conj reservoirs,cells
R12033 T15872 T15871 prep of,reservoirs
R12034 T15873 T15872 pobj HIV-1,of
R12035 T15874 T15873 cc and,HIV-1
R12036 T15875 T15873 conj HTLV-I,HIV-1
R12037 T15876 T15855 punct ),persist
R12038 T15877 T15855 cc and,persist
R12039 T15878 T15855 conj result,persist
R12040 T15879 T15878 prep in,result
R12041 T15880 T15881 det the,accumulation
R12042 T15881 T15879 pobj accumulation,in
R12043 T15882 T15881 prep of,accumulation
R12044 T15883 T15884 amod viral,proteins
R12045 T15884 T15882 pobj proteins,of
R12046 T15885 T15887 nsubj that,stimulate
R12047 T15886 T15887 preconj either,stimulate
R12048 T15887 T15884 relcl stimulate,proteins
R12049 T15888 T15887 dobj NF-κB,stimulate
R12050 T15889 T15888 cc and/or,NF-κB
R12051 T15890 T15891 compound CREB,activation
R12052 T15891 T15887 dobj activation,stimulate
R12053 T15892 T15891 cc or,activation
R12054 T15893 T15894 advmod directly,inhibit
R12055 T15894 T15887 conj inhibit,stimulate
R12056 T15895 T15896 amod Foxp3,expression
R12057 T15896 T15894 dobj expression,inhibit
R12058 T15897 T15896 cc or,expression
R12059 T15898 T15896 conj function,expression
R12060 T15899 T15855 punct .,persist

GO-BP

Id Subject Object Predicate Lexical cue
T14460 85-100 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T14468 79-100 http://purl.obolibrary.org/obo/GO_0019080 denotes viral gene expression
T14482 296-311 http://purl.obolibrary.org/obo/GO_0032793 denotes CREB activation

GO-CC

Id Subject Object Predicate Lexical cue
T17663 123-128 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T17664 157-162 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

events-check-again

Id Subject Object Predicate Lexical cue
T18497 116-119 Protein denotes CD4
T18498 324-331 Negative_regulation denotes inhibit
T18499 332-337 Protein denotes Foxp3
T18500 338-348 Gene_expression denotes expression
R13979 T18499 T18500 themeOf Foxp3,expression
R13980 T18500 T18498 themeOf expression,inhibit

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T14390 116-119 Protein denotes CD4
T14391 324-331 Negative_regulation denotes inhibit
T14392 332-337 Protein denotes Foxp3
T14393 338-348 Gene_expression denotes expression
R10646 T14392 T14393 themeOf Foxp3,expression
R10647 T14393 T14391 themeOf expression,inhibit

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17589 116-119 P01730 denotes CD4
T17590 296-300 Q02930 denotes CREB
T17591 296-300 O43889 denotes CREB
T17592 296-300 P16220 denotes CREB
T17593 296-300 Q8TEY5 denotes CREB
T17594 296-300 P15336 denotes CREB
T17595 296-300 P18848 denotes CREB
T17596 332-337 Q9BZS1 denotes Foxp3

test2

Id Subject Object Predicate Lexical cue
T14249 338-348 Gene_expression denotes expression
T14246 116-119 Protein denotes CD4
T14247 324-331 Negative_regulation denotes inhibit
T14248 332-337 Protein denotes Foxp3
R10578 T14248 T14249 themeOf Foxp3,expression
R10579 T14249 T14247 themeOf expression,inhibit