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PMC:1440874 / 55563-56120 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12623 0-10 NN denotes Blastocyst
T12624 11-20 NN denotes outgrowth
T12625 21-29 NNS denotes cultures
T12626 29-30 . denotes .
T12627 30-224 sentence denotes Superovulated heterozygous female mice (Atrx WT/flox) were mated to homozygous GATA1-cre +/+ transgenic males, and blastocysts were flushed from uterine horns with M2 medium (Sigma) at 3.5 dpc.
T12628 31-44 VBN denotes Superovulated
T12629 65-69 NNS denotes mice
T12630 45-57 JJ denotes heterozygous
T12631 58-64 JJ denotes female
T12632 90-95 VBN denotes mated
T12633 70-71 -LRB- denotes (
T12634 79-83 NN denotes flox
T12635 71-78 NN denotes Atrx WT
T12636 78-79 HYPH denotes /
T12637 83-84 -RRB- denotes )
T12638 85-89 VBD denotes were
T12639 96-98 IN denotes to
T12640 99-109 JJ denotes homozygous
T12641 135-140 NNS denotes males
T12642 110-115 NN denotes GATA1
T12643 116-119 NN denotes cre
T12644 115-116 HYPH denotes -
T12645 120-121 SYM denotes +
T12646 121-122 HYPH denotes /
T12647 122-123 SYM denotes +
T12648 124-134 JJ denotes transgenic
T12649 140-142 , denotes ,
T12650 142-145 CC denotes and
T12651 146-157 NNS denotes blastocysts
T12652 163-170 VBN denotes flushed
T12653 158-162 VBD denotes were
T12654 171-175 IN denotes from
T12655 176-183 JJ denotes uterine
T12656 184-189 NNS denotes horns
T12657 190-194 IN denotes with
T12658 195-197 NN denotes M2
T12659 198-204 NN denotes medium
T12660 205-206 -LRB- denotes (
T12661 206-211 NNP denotes Sigma
T12662 211-212 -RRB- denotes )
T12663 213-215 IN denotes at
T12664 216-219 CD denotes 3.5
T12665 220-223 NNS denotes dpc
T12666 223-224 . denotes .
T12667 224-327 sentence denotes Individual blastocysts were cultured in multiwell tissue cultures plates as described previously [44].
T12668 225-235 JJ denotes Individual
T12669 236-247 NNS denotes blastocysts
T12670 253-261 VBN denotes cultured
T12671 248-252 VBD denotes were
T12672 262-264 IN denotes in
T12673 265-274 JJ denotes multiwell
T12674 282-290 NNS denotes cultures
T12675 275-281 NN denotes tissue
T12676 291-297 NNS denotes plates
T12677 298-300 IN denotes as
T12678 301-310 VBN denotes described
T12679 311-321 RB denotes previously
T12680 322-323 -LRB- denotes [
T12681 323-325 CD denotes 44
T12682 325-326 -RRB- denotes ]
T12683 326-327 . denotes .
T12684 327-410 sentence denotes Cultures were inspected and photographed daily and the extent of outgrowth scored.
T12685 328-336 NNS denotes Cultures
T12686 342-351 VBN denotes inspected
T12687 337-341 VBD denotes were
T12688 352-355 CC denotes and
T12689 356-368 VBN denotes photographed
T12690 369-374 RB denotes daily
T12691 375-378 CC denotes and
T12692 379-382 DT denotes the
T12693 383-389 NN denotes extent
T12694 403-409 VBN denotes scored
T12695 390-392 IN denotes of
T12696 393-402 NN denotes outgrowth
T12697 409-410 . denotes .
T12698 410-464 sentence denotes After 7 d, cultures were harvested and DNA extracted.
T12699 411-416 IN denotes After
T12700 436-445 VBN denotes harvested
T12701 417-418 CD denotes 7
T12702 419-420 NNS denotes d
T12703 420-422 , denotes ,
T12704 422-430 NNS denotes cultures
T12705 431-435 VBD denotes were
T12706 446-449 CC denotes and
T12707 450-453 NN denotes DNA
T12708 454-463 VBN denotes extracted
T12709 463-464 . denotes .
T12710 464-557 sentence denotes The Atrx genotype and sex of each culture was determined by PCR as described in Protocol S1.
T12711 465-468 DT denotes The
T12712 474-482 NN denotes genotype
T12713 469-473 NN denotes Atrx
T12714 511-521 VBN denotes determined
T12715 483-486 CC denotes and
T12716 487-490 NN denotes sex
T12717 491-493 IN denotes of
T12718 494-498 DT denotes each
T12719 499-506 NN denotes culture
T12720 507-510 VBD denotes was
T12721 522-524 IN denotes by
T12722 525-528 NN denotes PCR
T12723 529-531 IN denotes as
T12724 532-541 VBN denotes described
T12725 542-544 IN denotes in
T12726 545-553 NN denotes Protocol
T12727 554-556 NN denotes S1
T12728 556-557 . denotes .
R7940 T12623 T12624 compound Blastocyst,outgrowth
R7941 T12624 T12625 compound outgrowth,cultures
R7942 T12626 T12625 punct .,cultures
R7943 T12628 T12629 amod Superovulated,mice
R7944 T12629 T12632 nsubjpass mice,mated
R7945 T12630 T12629 amod heterozygous,mice
R7946 T12631 T12629 amod female,mice
R7947 T12633 T12634 punct (,flox
R7948 T12634 T12629 parataxis flox,mice
R7949 T12635 T12634 compound Atrx WT,flox
R7950 T12636 T12634 punct /,flox
R7951 T12637 T12634 punct ),flox
R7952 T12638 T12632 auxpass were,mated
R7953 T12639 T12632 prep to,mated
R7954 T12640 T12641 amod homozygous,males
R7955 T12641 T12639 pobj males,to
R7956 T12642 T12643 nmod GATA1,cre
R7957 T12643 T12641 nmod cre,males
R7958 T12644 T12643 punct -,cre
R7959 T12645 T12643 punct +,cre
R7960 T12646 T12643 punct /,cre
R7961 T12647 T12643 punct +,cre
R7962 T12648 T12641 amod transgenic,males
R7963 T12649 T12632 punct ", ",mated
R7964 T12650 T12632 cc and,mated
R7965 T12651 T12652 nsubjpass blastocysts,flushed
R7966 T12652 T12632 conj flushed,mated
R7967 T12653 T12652 auxpass were,flushed
R7968 T12654 T12652 prep from,flushed
R7969 T12655 T12656 amod uterine,horns
R7970 T12656 T12654 pobj horns,from
R7971 T12657 T12652 prep with,flushed
R7972 T12658 T12659 compound M2,medium
R7973 T12659 T12657 pobj medium,with
R7974 T12660 T12661 punct (,Sigma
R7975 T12661 T12659 parataxis Sigma,medium
R7976 T12662 T12661 punct ),Sigma
R7977 T12663 T12652 prep at,flushed
R7978 T12664 T12665 nummod 3.5,dpc
R7979 T12665 T12663 pobj dpc,at
R7980 T12666 T12652 punct .,flushed
R7981 T12668 T12669 amod Individual,blastocysts
R7982 T12669 T12670 nsubjpass blastocysts,cultured
R7983 T12671 T12670 auxpass were,cultured
R7984 T12672 T12670 prep in,cultured
R7985 T12673 T12674 amod multiwell,cultures
R7986 T12674 T12676 compound cultures,plates
R7987 T12675 T12674 compound tissue,cultures
R7988 T12676 T12672 pobj plates,in
R7989 T12677 T12678 mark as,described
R7990 T12678 T12670 advcl described,cultured
R7991 T12679 T12678 advmod previously,described
R7992 T12680 T12681 punct [,44
R7993 T12681 T12670 parataxis 44,cultured
R7994 T12682 T12681 punct ],44
R7995 T12683 T12670 punct .,cultured
R7996 T12685 T12686 nsubj Cultures,inspected
R7997 T12687 T12686 aux were,inspected
R7998 T12688 T12686 cc and,inspected
R7999 T12689 T12686 conj photographed,inspected
R8000 T12690 T12686 advmod daily,inspected
R8001 T12691 T12686 cc and,inspected
R8002 T12692 T12693 det the,extent
R8003 T12693 T12694 nsubj extent,scored
R8004 T12694 T12686 conj scored,inspected
R8005 T12695 T12693 prep of,extent
R8006 T12696 T12695 pobj outgrowth,of
R8007 T12697 T12694 punct .,scored
R8008 T12699 T12700 prep After,harvested
R8009 T12701 T12702 nummod 7,d
R8010 T12702 T12699 pobj d,After
R8011 T12703 T12700 punct ", ",harvested
R8012 T12704 T12700 nsubjpass cultures,harvested
R8013 T12705 T12700 auxpass were,harvested
R8014 T12706 T12700 cc and,harvested
R8015 T12707 T12708 nsubj DNA,extracted
R8016 T12708 T12700 conj extracted,harvested
R8017 T12709 T12700 punct .,harvested
R8018 T12711 T12712 det The,genotype
R8019 T12712 T12714 nsubjpass genotype,determined
R8020 T12713 T12712 compound Atrx,genotype
R8021 T12715 T12712 cc and,genotype
R8022 T12716 T12712 conj sex,genotype
R8023 T12717 T12712 prep of,genotype
R8024 T12718 T12719 det each,culture
R8025 T12719 T12717 pobj culture,of
R8026 T12720 T12714 auxpass was,determined
R8027 T12721 T12714 prep by,determined
R8028 T12722 T12721 pobj PCR,by
R8029 T12723 T12724 mark as,described
R8030 T12724 T12714 advcl described,determined
R8031 T12725 T12724 prep in,described
R8032 T12726 T12727 compound Protocol,S1
R8033 T12727 T12725 pobj S1,in
R8034 T12728 T12714 punct .,determined

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12609 79-83 SO:0000359 denotes flox
T12610 90-95 GO:0007618 denotes mated
T12611 110-115 PR_EXT:000007857 denotes GATA1
T12612 120-121 SO_EXT:normal_or_wild_type_or_present denotes +
T12613 122-123 SO_EXT:normal_or_wild_type_or_present denotes +
T12614 124-134 SO_EXT:transgenic_entity denotes transgenic
T12615 135-140 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T12616 146-157 UBERON:0000358 denotes blastocysts
T12617 176-189 UBERON:0002247 denotes uterine horns
T12618 236-247 UBERON:0000358 denotes blastocysts
T12619 275-281 UBERON:0000479 denotes tissue
T12620 450-453 CHEBI_SO_EXT:DNA denotes DNA
T12621 469-473 PR_EXT:000004503 denotes Atrx
T12622 474-482 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T12603 0-10 UBERON:0000358 denotes Blastocyst
T12604 36-44 GO:0030728 denotes ovulated
T12605 58-64 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes female
T12606 65-69 NCBITaxon:10088 denotes mice
T12607 71-75 PR_EXT:000004503 denotes Atrx
T12608 76-78 SO_EXT:wild_type_entity_or_quality denotes WT

2_test

Id Subject Object Predicate Lexical cue
16628246-10859163-85799793 323-325 10859163 denotes 44
T86047 323-325 10859163 denotes 44

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12591 0-10 UBERON:0000358 denotes Blastocyst
T12592 36-44 GO:0030728 denotes ovulated
T12593 65-69 NCBITaxon:10088 denotes mice
T12594 71-75 PR:000004503 denotes Atrx
T12595 79-83 SO:0000359 denotes flox
T12596 90-95 GO:0007618 denotes mated
T12597 110-115 PR:000007857 denotes GATA1
T12598 146-157 UBERON:0000358 denotes blastocysts
T12599 176-189 UBERON:0002247 denotes uterine horns
T12600 236-247 UBERON:0000358 denotes blastocysts
T12601 275-281 UBERON:0000479 denotes tissue
T12602 469-473 PR:000004503 denotes Atrx