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a more likely explanation for this phenomenon stems from experimental observations suggesting that imprinted X-inactivation is not imposed on all precursors of the mouse extraembryonic tissues: A subpopulation of cells may escape this process and make a random “choice” of which X chromosome will be inactivated. On average, 50% of the cells in this randomly inactivating subpopulation would be expected to maintain an active Xp chromosome. In support of this hypothesis, it has been demonstrated that expression of paternally transmitted X-linked lacZ [33,34] and GFP [35] transgenes failed to be silenced in a small subpopulation of extraembryonic cells. Further, it has been shown that in a subpopulation of extraembryonic cells, it is the Xm rather than the Xp that undergoes late replication, a molecular correlate of the inactive state [18,36]. Although initially small and quickly diluted in normal embryos, the cellular subpopulation that inactivates the Xm chromosome could rapidly expand to replace the normally imprinted cells in extraembryonic lineages if the normal silencing of Xp compromises cell growth or differentiation. Interestingly, it has been suggested that the size of the population that initially escapes imprinting may range widely (from 0% to 30%), even between genetically identical embryos [37], and this may account for the variable phenotype observed among females bearing Xm-linked mutant alleles of genes essential for normal extraembryonic development [38]. Put simply, carrier females bearing a small initial population of escaping cells would be more severely affected than those bearing a larger population. This could explain why we have observed significant phenotypic variation among Atrx carrier females, with some carriers dying in utero by 9.5 dpc (Table 1) and others developing to term."}

{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T9854","span":{"begin":107,"end":131},"obj":"GO:0060819"},{"id":"T9855","span":{"begin":117,"end":118},"obj":"GO:0000805"},{"id":"T9856","span":{"begin":172,"end":177},"obj":"NCBITaxon:10088"},{"id":"T9857","span":{"begin":178,"end":200},"obj":"UBERON:0005292"},{"id":"T9858","span":{"begin":207,"end":226},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T9859","span":{"begin":221,"end":226},"obj":"CL_GO_EXT:cell"},{"id":"T9860","span":{"begin":287,"end":299},"obj":"GO:0000805"},{"id":"T9861","span":{"begin":289,"end":299},"obj":"GO_SO_EXT:chromosome"},{"id":"T9862","span":{"begin":344,"end":349},"obj":"CL_GO_EXT:cell"},{"id":"T9863","span":{"begin":437,"end":447},"obj":"GO_SO_EXT:chromosome"},{"id":"T9864","span":{"begin":510,"end":520},"obj":"GO:0010467"},{"id":"T9865","span":{"begin":547,"end":548},"obj":"GO:0000805"},{"id":"T9866","span":{"begin":556,"end":560},"obj":"PR_EXT:000033987"},{"id":"T9867","span":{"begin":582,"end":592},"obj":"SO_EXT:0000902"},{"id":"T9868","span":{"begin":606,"end":614},"obj":"GO:0016458"},{"id":"T9869","span":{"begin":629,"end":642},"obj":"_FRAGMENT"},{"id":"T9870","span":{"begin":658,"end":663},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T9871","span":{"begin":643,"end":663},"obj":"CL:0000349"},{"id":"T9872","span":{"begin":648,"end":657},"obj":"UBERON:0000922"},{"id":"T9873","span":{"begin":658,"end":663},"obj":"CL_GO_EXT:cell"},{"id":"T9874","span":{"begin":705,"end":718},"obj":"_FRAGMENT"},{"id":"T9875","span":{"begin":734,"end":739},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T9876","span":{"begin":719,"end":739},"obj":"CL:0000349"},{"id":"T9877","span":{"begin":724,"end":733},"obj":"UBERON:0000922"},{"id":"T9878","span":{"begin":734,"end":739},"obj":"CL_GO_EXT:cell"},{"id":"T9879","span":{"begin":793,"end":804},"obj":"GO:0006260"},{"id":"T9880","span":{"begin":808,"end":817},"obj":"CHEBI_EXT:polyatomic_entity_or_group"},{"id":"T9881","span":{"begin":914,"end":921},"obj":"UBERON:0000922"},{"id":"T9882","span":{"begin":927,"end":935},"obj":"CL_GO_EXT:cell"},{"id":"T9883","span":{"begin":927,"end":935},"obj":"_FRAGMENT"},{"id":"T9884","span":{"begin":939,"end":949},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T9885","span":{"begin":974,"end":984},"obj":"GO_SO_EXT:chromosome"},{"id":"T9886","span":{"begin":1030,"end":1039},"obj":"GO:0071514"},{"id":"T9887","span":{"begin":1040,"end":1045},"obj":"CL_GO_EXT:cell"},{"id":"T9888","span":{"begin":1054,"end":1063},"obj":"UBERON:0000922"},{"id":"T9889","span":{"begin":1087,"end":1096},"obj":"GO:0016458"},{"id":"T9890","span":{"begin":1115,"end":1119},"obj":"CL_GO_EXT:cell"},{"id":"T9891","span":{"begin":1115,"end":1119},"obj":"_FRAGMENT"},{"id":"T9892","span":{"begin":1130,"end":1145},"obj":"GO:0030154"},{"id":"T9893","span":{"begin":1120,"end":1126},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T9894","span":{"begin":1239,"end":1249},"obj":"GO:0071514"},{"id":"T9895","span":{"begin":1298,"end":1309},"obj":"SO_EXT:0000704"},{"id":"T9896","span":{"begin":1320,"end":1327},"obj":"UBERON:0000922"},{"id":"T9897","span":{"begin":1397,"end":1404},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T9898","span":{"begin":1423,"end":1429},"obj":"SO_EXT:sequence_altered_entity_or_alteration_process"},{"id":"T9899","span":{"begin":1430,"end":1437},"obj":"SO_EXT:0001023"},{"id":"T9900","span":{"begin":1441,"end":1446},"obj":"SO_EXT:0000704"},{"id":"T9901","span":{"begin":1473,"end":1482},"obj":"UBERON:0000922"},{"id":"T9902","span":{"begin":1521,"end":1528},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T9903","span":{"begin":1553,"end":1566},"obj":"_FRAGMENT"},{"id":"T9904","span":{"begin":1576,"end":1581},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T9905","span":{"begin":1576,"end":1581},"obj":"CL_GO_EXT:cell"},{"id":"T9906","span":{"begin":1733,"end":1737},"obj":"PR_EXT:000004503"},{"id":"T9907","span":{"begin":1746,"end":1753},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T9908","span":{"begin":1774,"end":1779},"obj":"GO:0016265"}],"relations":[{"id":"R5920","pred":"_lexicallyChainedTo","subj":"T9870","obj":"T9869"},{"id":"R5921","pred":"_lexicallyChainedTo","subj":"T9875","obj":"T9874"},{"id":"R5922","pred":"_lexicallyChainedTo","subj":"T9884","obj":"T9883"},{"id":"R5923","pred":"_lexicallyChainedTo","subj":"T9892","obj":"T9891"},{"id":"R5924","pred":"_lexicallyChainedTo","subj":"T9904","obj":"T9903"}],"text":"Perhaps a more likely explanation for this phenomenon stems from experimental observations suggesting that imprinted X-inactivation is not imposed on all precursors of the mouse extraembryonic tissues: A subpopulation of cells may escape this process and make a random “choice” of which X chromosome will be inactivated. On average, 50% of the cells in this randomly inactivating subpopulation would be expected to maintain an active Xp chromosome. In support of this hypothesis, it has been demonstrated that expression of paternally transmitted X-linked lacZ [33,34] and GFP [35] transgenes failed to be silenced in a small subpopulation of extraembryonic cells. Further, it has been shown that in a subpopulation of extraembryonic cells, it is the Xm rather than the Xp that undergoes late replication, a molecular correlate of the inactive state [18,36]. Although initially small and quickly diluted in normal embryos, the cellular subpopulation that inactivates the Xm chromosome could rapidly expand to replace the normally imprinted cells in extraembryonic lineages if the normal silencing of Xp compromises cell growth or differentiation. Interestingly, it has been suggested that the size of the population that initially escapes imprinting may range widely (from 0% to 30%), even between genetically identical embryos [37], and this may account for the variable phenotype observed among females bearing Xm-linked mutant alleles of genes essential for normal extraembryonic development [38]. Put simply, carrier females bearing a small initial population of escaping cells would be more severely affected than those bearing a larger population. This could explain why we have observed significant phenotypic variation among Atrx carrier females, with some carriers dying in utero by 9.5 dpc (Table 1) and others developing to term."}

{"project":"2_test","denotations":[{"id":"16628246-7834909-85799776","span":{"begin":562,"end":564},"obj":"7834909"},{"id":"16628246-10794075-85799777","span":{"begin":565,"end":567},"obj":"10794075"},{"id":"16628246-11252054-85799778","span":{"begin":578,"end":580},"obj":"11252054"},{"id":"16628246-1152998-85799779","span":{"begin":851,"end":853},"obj":"1152998"},{"id":"16628246-958416-85799780","span":{"begin":854,"end":856},"obj":"958416"},{"id":"16628246-11698184-85799781","span":{"begin":1329,"end":1331},"obj":"11698184"},{"id":"16628246-11051544-85799782","span":{"begin":1496,"end":1498},"obj":"11051544"},{"id":"T81121","span":{"begin":562,"end":564},"obj":"7834909"},{"id":"T60587","span":{"begin":565,"end":567},"obj":"10794075"},{"id":"T75568","span":{"begin":578,"end":580},"obj":"11252054"},{"id":"T99758","span":{"begin":851,"end":853},"obj":"1152998"},{"id":"T9314","span":{"begin":854,"end":856},"obj":"958416"},{"id":"T45193","span":{"begin":1329,"end":1331},"obj":"11698184"},{"id":"T45487","span":{"begin":1496,"end":1498},"obj":"11051544"}],"text":"Perhaps a more likely explanation for this phenomenon stems from experimental observations suggesting that imprinted X-inactivation is not imposed on all precursors of the mouse extraembryonic tissues: A subpopulation of cells may escape this process and make a random “choice” of which X chromosome will be inactivated. On average, 50% of the cells in this randomly inactivating subpopulation would be expected to maintain an active Xp chromosome. In support of this hypothesis, it has been demonstrated that expression of paternally transmitted X-linked lacZ [33,34] and GFP [35] transgenes failed to be silenced in a small subpopulation of extraembryonic cells. Further, it has been shown that in a subpopulation of extraembryonic cells, it is the Xm rather than the Xp that undergoes late replication, a molecular correlate of the inactive state [18,36]. Although initially small and quickly diluted in normal embryos, the cellular subpopulation that inactivates the Xm chromosome could rapidly expand to replace the normally imprinted cells in extraembryonic lineages if the normal silencing of Xp compromises cell growth or differentiation. Interestingly, it has been suggested that the size of the population that initially escapes imprinting may range widely (from 0% to 30%), even between genetically identical embryos [37], and this may account for the variable phenotype observed among females bearing Xm-linked mutant alleles of genes essential for normal extraembryonic development [38]. Put simply, carrier females bearing a small initial population of escaping cells would be more severely affected than those bearing a larger population. This could explain why we have observed significant phenotypic variation among Atrx carrier females, with some carriers dying in utero by 9.5 dpc (Table 1) and others developing to term."}

{"project":"craft-ca-core-dev","denotations":[{"id":"T9681","span":{"begin":107,"end":131},"obj":"GO:0060819"},{"id":"T9682","span":{"begin":117,"end":118},"obj":"GO:0000805"},{"id":"T9683","span":{"begin":172,"end":177},"obj":"NCBITaxon:10088"},{"id":"T9684","span":{"begin":178,"end":200},"obj":"UBERON:0005292"},{"id":"T9685","span":{"begin":287,"end":299},"obj":"GO:0000805"},{"id":"T9686","span":{"begin":510,"end":520},"obj":"GO:0010467"},{"id":"T9687","span":{"begin":547,"end":548},"obj":"GO:0000805"},{"id":"T9688","span":{"begin":556,"end":560},"obj":"PR:000033987"},{"id":"T9689","span":{"begin":582,"end":592},"obj":"SO:0000902"},{"id":"T9690","span":{"begin":606,"end":614},"obj":"GO:0016458"},{"id":"T9691","span":{"begin":643,"end":663},"obj":"CL:0000349"},{"id":"T9692","span":{"begin":648,"end":657},"obj":"UBERON:0000922"},{"id":"T9693","span":{"begin":719,"end":739},"obj":"CL:0000349"},{"id":"T9694","span":{"begin":724,"end":733},"obj":"UBERON:0000922"},{"id":"T9695","span":{"begin":793,"end":804},"obj":"GO:0006260"},{"id":"T9696","span":{"begin":914,"end":921},"obj":"UBERON:0000922"},{"id":"T9697","span":{"begin":1030,"end":1039},"obj":"GO:0071514"},{"id":"T9698","span":{"begin":1054,"end":1063},"obj":"UBERON:0000922"},{"id":"T9699","span":{"begin":1087,"end":1096},"obj":"GO:0016458"},{"id":"T9700","span":{"begin":1115,"end":1119},"obj":"_FRAGMENT"},{"id":"T9701","span":{"begin":1130,"end":1145},"obj":"GO:0030154"},{"id":"T9702","span":{"begin":1239,"end":1249},"obj":"GO:0071514"},{"id":"T9703","span":{"begin":1298,"end":1309},"obj":"SO:0000704"},{"id":"T9704","span":{"begin":1320,"end":1327},"obj":"UBERON:0000922"},{"id":"T9705","span":{"begin":1430,"end":1437},"obj":"SO:0001023"},{"id":"T9706","span":{"begin":1441,"end":1446},"obj":"SO:0000704"},{"id":"T9707","span":{"begin":1473,"end":1482},"obj":"UBERON:0000922"},{"id":"T9708","span":{"begin":1733,"end":1737},"obj":"PR:000004503"},{"id":"T9709","span":{"begin":1774,"end":1779},"obj":"GO:0016265"}],"relations":[{"id":"R5915","pred":"_lexicallyChainedTo","subj":"T9701","obj":"T9700"}],"text":"Perhaps a more likely explanation for this phenomenon stems from experimental observations suggesting that imprinted X-inactivation is not imposed on all precursors of the mouse extraembryonic tissues: A subpopulation of cells may escape this process and make a random “choice” of which X chromosome will be inactivated. On average, 50% of the cells in this randomly inactivating subpopulation would be expected to maintain an active Xp chromosome. In support of this hypothesis, it has been demonstrated that expression of paternally transmitted X-linked lacZ [33,34] and GFP [35] transgenes failed to be silenced in a small subpopulation of extraembryonic cells. Further, it has been shown that in a subpopulation of extraembryonic cells, it is the Xm rather than the Xp that undergoes late replication, a molecular correlate of the inactive state [18,36]. Although initially small and quickly diluted in normal embryos, the cellular subpopulation that inactivates the Xm chromosome could rapidly expand to replace the normally imprinted cells in extraembryonic lineages if the normal silencing of Xp compromises cell growth or differentiation. Interestingly, it has been suggested that the size of the population that initially escapes imprinting may range widely (from 0% to 30%), even between genetically identical embryos [37], and this may account for the variable phenotype observed among females bearing Xm-linked mutant alleles of genes essential for normal extraembryonic development [38]. Put simply, carrier females bearing a small initial population of escaping cells would be more severely affected than those bearing a larger population. This could explain why we have observed significant phenotypic variation among Atrx carrier females, with some carriers dying in utero by 9.5 dpc (Table 1) and others developing to term."}