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PMC:1440874 / 45110-46057 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10146 252-261 NN denotes phosphate
T10099 0-3 DT denotes The
T10100 4-12 NN denotes survival
T10101 37-46 VBZ denotes contrasts
T10102 13-15 IN denotes of
T10103 16-20 NN denotes Atrx
T10104 29-36 NNS denotes females
T10105 21-28 NN denotes carrier
T10106 47-51 IN denotes with
T10107 52-55 DT denotes the
T10108 56-66 NNS denotes phenotypes
T10109 67-71 VBN denotes seen
T10110 72-74 IN denotes in
T10111 75-83 NNS denotes carriers
T10112 84-86 IN denotes of
T10113 87-96 NNS denotes mutations
T10114 97-99 IN denotes of
T10115 100-105 JJ denotes other
T10116 122-127 NNS denotes genes
T10117 106-112 JJ denotes murine
T10118 113-114 NN denotes X
T10119 115-121 VBN denotes linked
T10120 114-115 HYPH denotes -
T10121 128-133 VBN denotes known
T10122 134-136 TO denotes to
T10123 137-139 VB denotes be
T10124 140-149 JJ denotes essential
T10125 150-152 IN denotes in
T10126 153-156 DT denotes the
T10127 172-183 NN denotes compartment
T10128 157-171 JJ denotes extraembryonic
T10129 183-184 . denotes .
T10130 184-423 sentence denotes For example, targeted disruption of the dyskerin (Dkc1), glucose 6-phosphate dehydrogenase (G6PD), and choroideremia (Chm) genes cause embryonic lethality in null male embryos through defects of the extraembryonic-derived tissues [29–31].
T10131 185-188 IN denotes For
T10132 314-319 VBP denotes cause
T10133 189-196 NN denotes example
T10134 196-198 , denotes ,
T10135 198-206 VBN denotes targeted
T10136 207-217 NN denotes disruption
T10137 218-220 IN denotes of
T10138 221-224 DT denotes the
T10139 308-313 NNS denotes genes
T10140 225-233 NN denotes dyskerin
T10141 234-235 -LRB- denotes (
T10142 235-239 NN denotes Dkc1
T10143 239-240 -RRB- denotes )
T10144 240-242 , denotes ,
T10145 242-249 NN denotes glucose
T10147 250-251 CD denotes 6
T10148 251-252 HYPH denotes -
T10149 262-275 NN denotes dehydrogenase
T10150 276-277 -LRB- denotes (
T10151 277-281 NN denotes G6PD
T10152 281-282 -RRB- denotes )
T10153 282-284 , denotes ,
T10154 284-287 CC denotes and
T10155 288-301 NN denotes choroideremia
T10156 302-303 -LRB- denotes (
T10157 303-306 NN denotes Chm
T10158 306-307 -RRB- denotes )
T10159 320-329 JJ denotes embryonic
T10160 330-339 NN denotes lethality
T10161 340-342 IN denotes in
T10162 343-347 JJ denotes null
T10163 353-360 NNS denotes embryos
T10164 348-352 JJ denotes male
T10165 361-368 IN denotes through
T10166 369-376 NNS denotes defects
T10167 377-379 IN denotes of
T10168 380-383 DT denotes the
T10169 407-414 NNS denotes tissues
T10170 384-398 JJ denotes extraembryonic
T10171 399-406 VBN denotes derived
T10172 398-399 HYPH denotes -
T10173 415-416 -LRB- denotes [
T10174 416-418 CD denotes 29
T10175 418-419 SYM denotes –
T10176 419-421 CD denotes 31
T10177 421-422 -RRB- denotes ]
T10178 422-423 . denotes .
T10179 423-601 sentence denotes Female mice carrying mutations of these genes on the maternally inherited X chromosome also die in utero, whereas females that inherit the mutation on the Xp chromosome survive.
T10180 424-430 JJ denotes Female
T10181 431-435 NNS denotes mice
T10182 516-519 VBP denotes die
T10183 436-444 VBG denotes carrying
T10184 445-454 NNS denotes mutations
T10185 455-457 IN denotes of
T10186 458-463 DT denotes these
T10187 464-469 NNS denotes genes
T10188 470-472 IN denotes on
T10189 473-476 DT denotes the
T10190 500-510 NN denotes chromosome
T10191 477-487 RB denotes maternally
T10192 488-497 VBN denotes inherited
T10193 498-499 NN denotes X
T10194 511-515 RB denotes also
T10195 520-522 FW denotes in
T10196 523-528 FW denotes utero
T10197 528-530 , denotes ,
T10198 530-537 IN denotes whereas
T10199 593-600 VBP denotes survive
T10200 538-545 NNS denotes females
T10201 546-550 WDT denotes that
T10202 551-558 VBP denotes inherit
T10203 559-562 DT denotes the
T10204 563-571 NN denotes mutation
T10205 572-574 IN denotes on
T10206 575-578 DT denotes the
T10207 582-592 NN denotes chromosome
T10208 579-581 NN denotes Xp
T10209 600-601 . denotes .
T10210 601-822 sentence denotes Thus, unlike Atrx, these genes and/or their effects on cell growth are unable to circumvent the processes that ultimately cause all cells in the extraembryonic tissues to express only the maternally derived X chromosome.
T10211 602-606 RB denotes Thus
T10212 669-672 VBP denotes are
T10213 606-608 , denotes ,
T10214 608-614 IN denotes unlike
T10215 615-619 NN denotes Atrx
T10216 619-621 , denotes ,
T10217 621-626 DT denotes these
T10218 627-632 NNS denotes genes
T10219 633-636 CC denotes and
T10220 636-637 HYPH denotes /
T10221 637-639 CC denotes or
T10222 640-645 PRP$ denotes their
T10223 646-653 NNS denotes effects
T10224 654-656 IN denotes on
T10225 657-661 NN denotes cell
T10226 662-668 NN denotes growth
T10227 673-679 JJ denotes unable
T10228 680-682 TO denotes to
T10229 683-693 VB denotes circumvent
T10230 694-697 DT denotes the
T10231 698-707 NNS denotes processes
T10232 708-712 WDT denotes that
T10233 724-729 VBP denotes cause
T10234 713-723 RB denotes ultimately
T10235 730-733 DT denotes all
T10236 734-739 NNS denotes cells
T10237 773-780 VB denotes express
T10238 740-742 IN denotes in
T10239 743-746 DT denotes the
T10240 762-769 NNS denotes tissues
T10241 747-761 JJ denotes extraembryonic
T10242 770-772 TO denotes to
T10243 781-785 RB denotes only
T10244 811-821 NN denotes chromosome
T10245 786-789 DT denotes the
T10246 790-800 RB denotes maternally
T10247 801-808 VBN denotes derived
T10248 809-810 NN denotes X
T10249 821-822 . denotes .
T10250 822-947 sentence denotes How might expression of the paternal Atrx WT allele be maintained in the extraembryonic tissues of the Atrx carrier females?
T10251 823-826 WRB denotes How
T10252 878-888 VBN denotes maintained
T10253 827-832 MD denotes might
T10254 833-843 NN denotes expression
T10255 844-846 IN denotes of
T10256 847-850 DT denotes the
T10257 868-874 NN denotes allele
T10258 851-859 JJ denotes paternal
T10259 860-867 NN denotes Atrx WT
T10260 875-877 VB denotes be
T10261 889-891 IN denotes in
T10262 892-895 DT denotes the
T10263 911-918 NNS denotes tissues
T10264 896-910 JJ denotes extraembryonic
T10265 919-921 IN denotes of
T10266 922-925 DT denotes the
T10267 939-946 NNS denotes females
T10268 926-930 NN denotes Atrx
T10269 931-938 NN denotes carrier
T10270 946-947 . denotes ?
R6084 T10099 T10100 det The,survival
R6085 T10100 T10101 nsubj survival,contrasts
R6086 T10102 T10100 prep of,survival
R6087 T10103 T10104 compound Atrx,females
R6088 T10104 T10102 pobj females,of
R6089 T10105 T10104 compound carrier,females
R6090 T10106 T10101 prep with,contrasts
R6091 T10107 T10108 det the,phenotypes
R6092 T10108 T10106 pobj phenotypes,with
R6093 T10109 T10108 acl seen,phenotypes
R6094 T10110 T10109 prep in,seen
R6095 T10111 T10110 pobj carriers,in
R6096 T10112 T10111 prep of,carriers
R6097 T10113 T10112 pobj mutations,of
R6098 T10114 T10113 prep of,mutations
R6099 T10115 T10116 amod other,genes
R6100 T10116 T10114 pobj genes,of
R6101 T10117 T10116 amod murine,genes
R6102 T10118 T10119 npadvmod X,linked
R6103 T10119 T10116 amod linked,genes
R6104 T10120 T10119 punct -,linked
R6105 T10121 T10116 acl known,genes
R6106 T10122 T10123 aux to,be
R6107 T10123 T10121 xcomp be,known
R6108 T10124 T10123 acomp essential,be
R6109 T10125 T10123 prep in,be
R6110 T10126 T10127 det the,compartment
R6111 T10127 T10125 pobj compartment,in
R6112 T10128 T10127 amod extraembryonic,compartment
R6113 T10129 T10101 punct .,contrasts
R6114 T10131 T10132 prep For,cause
R6115 T10133 T10131 pobj example,For
R6116 T10134 T10132 punct ", ",cause
R6117 T10135 T10136 amod targeted,disruption
R6118 T10136 T10132 nsubj disruption,cause
R6119 T10137 T10136 prep of,disruption
R6120 T10138 T10139 det the,genes
R6121 T10139 T10137 pobj genes,of
R6122 T10140 T10139 nmod dyskerin,genes
R6123 T10141 T10140 punct (,dyskerin
R6124 T10142 T10140 appos Dkc1,dyskerin
R6125 T10143 T10140 punct ),dyskerin
R6126 T10144 T10140 punct ", ",dyskerin
R6127 T10145 T10146 nmod glucose,phosphate
R6128 T10146 T10149 compound phosphate,dehydrogenase
R6129 T10147 T10146 nummod 6,phosphate
R6130 T10148 T10146 punct -,phosphate
R6131 T10149 T10140 conj dehydrogenase,dyskerin
R6132 T10150 T10149 punct (,dehydrogenase
R6133 T10151 T10149 appos G6PD,dehydrogenase
R6134 T10152 T10149 punct ),dehydrogenase
R6135 T10153 T10149 punct ", ",dehydrogenase
R6136 T10154 T10149 cc and,dehydrogenase
R6137 T10155 T10149 conj choroideremia,dehydrogenase
R6138 T10156 T10155 punct (,choroideremia
R6139 T10157 T10155 appos Chm,choroideremia
R6140 T10158 T10139 punct ),genes
R6141 T10159 T10160 amod embryonic,lethality
R6142 T10160 T10132 dobj lethality,cause
R6143 T10161 T10160 prep in,lethality
R6144 T10162 T10163 amod null,embryos
R6145 T10163 T10161 pobj embryos,in
R6146 T10164 T10163 amod male,embryos
R6147 T10165 T10132 prep through,cause
R6148 T10166 T10165 pobj defects,through
R6149 T10167 T10166 prep of,defects
R6150 T10168 T10169 det the,tissues
R6151 T10169 T10167 pobj tissues,of
R6152 T10170 T10171 amod extraembryonic,derived
R6153 T10171 T10169 amod derived,tissues
R6154 T10172 T10171 punct -,derived
R6155 T10173 T10174 punct [,29
R6156 T10174 T10132 parataxis 29,cause
R6157 T10175 T10176 punct –,31
R6158 T10176 T10174 prep 31,29
R6159 T10177 T10174 punct ],29
R6160 T10178 T10132 punct .,cause
R6161 T10180 T10181 amod Female,mice
R6162 T10181 T10182 nsubj mice,die
R6163 T10183 T10181 acl carrying,mice
R6164 T10184 T10183 dobj mutations,carrying
R6165 T10185 T10184 prep of,mutations
R6166 T10186 T10187 det these,genes
R6167 T10187 T10185 pobj genes,of
R6168 T10188 T10184 prep on,mutations
R6169 T10189 T10190 det the,chromosome
R6170 T10190 T10188 pobj chromosome,on
R6171 T10191 T10192 advmod maternally,inherited
R6172 T10192 T10190 amod inherited,chromosome
R6173 T10193 T10190 compound X,chromosome
R6174 T10194 T10182 advmod also,die
R6175 T10195 T10196 advmod in,utero
R6176 T10196 T10182 advmod utero,die
R6177 T10197 T10182 punct ", ",die
R6178 T10198 T10199 mark whereas,survive
R6179 T10199 T10182 advcl survive,die
R6180 T10200 T10199 nsubj females,survive
R6181 T10201 T10202 dep that,inherit
R6182 T10202 T10200 relcl inherit,females
R6183 T10203 T10204 det the,mutation
R6184 T10204 T10202 dobj mutation,inherit
R6185 T10205 T10204 prep on,mutation
R6186 T10206 T10207 det the,chromosome
R6187 T10207 T10205 pobj chromosome,on
R6188 T10208 T10207 compound Xp,chromosome
R6189 T10209 T10182 punct .,die
R6190 T10211 T10212 advmod Thus,are
R6191 T10213 T10212 punct ", ",are
R6192 T10214 T10212 prep unlike,are
R6193 T10215 T10214 pobj Atrx,unlike
R6194 T10216 T10212 punct ", ",are
R6195 T10217 T10218 det these,genes
R6196 T10218 T10212 nsubj genes,are
R6197 T10219 T10218 cc and,genes
R6198 T10220 T10219 punct /,and
R6199 T10221 T10219 cc or,and
R6200 T10222 T10223 poss their,effects
R6201 T10223 T10218 conj effects,genes
R6202 T10224 T10223 prep on,effects
R6203 T10225 T10226 compound cell,growth
R6204 T10226 T10224 pobj growth,on
R6205 T10227 T10212 acomp unable,are
R6206 T10228 T10229 aux to,circumvent
R6207 T10229 T10227 xcomp circumvent,unable
R6208 T10230 T10231 det the,processes
R6209 T10231 T10229 dobj processes,circumvent
R6210 T10232 T10233 dep that,cause
R6211 T10233 T10231 relcl cause,processes
R6212 T10234 T10233 advmod ultimately,cause
R6213 T10235 T10236 det all,cells
R6214 T10236 T10237 nsubj cells,express
R6215 T10237 T10233 ccomp express,cause
R6216 T10238 T10236 prep in,cells
R6217 T10239 T10240 det the,tissues
R6218 T10240 T10238 pobj tissues,in
R6219 T10241 T10240 amod extraembryonic,tissues
R6220 T10242 T10237 aux to,express
R6221 T10243 T10244 advmod only,chromosome
R6222 T10244 T10237 dobj chromosome,express
R6223 T10245 T10244 det the,chromosome
R6224 T10246 T10247 advmod maternally,derived
R6225 T10247 T10244 amod derived,chromosome
R6226 T10248 T10244 compound X,chromosome
R6227 T10249 T10212 punct .,are
R6228 T10251 T10252 advmod How,maintained
R6229 T10253 T10252 aux might,maintained
R6230 T10254 T10252 nsubjpass expression,maintained
R6231 T10255 T10254 prep of,expression
R6232 T10256 T10257 det the,allele
R6233 T10257 T10255 pobj allele,of
R6234 T10258 T10259 amod paternal,Atrx WT
R6235 T10259 T10257 compound Atrx WT,allele
R6236 T10260 T10252 auxpass be,maintained
R6237 T10261 T10252 prep in,maintained
R6238 T10262 T10263 det the,tissues
R6239 T10263 T10261 pobj tissues,in
R6240 T10264 T10263 amod extraembryonic,tissues
R6241 T10265 T10263 prep of,tissues
R6242 T10266 T10267 det the,females
R6243 T10267 T10265 pobj females,of
R6244 T10268 T10269 compound Atrx,carrier
R6245 T10269 T10267 compound carrier,females
R6246 T10270 T10252 punct ?,maintained

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9774 16-20 PR_EXT:000004503 denotes Atrx
T9775 29-36 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T9776 87-96 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T9777 106-112 NCBITaxon:39107 denotes murine
T9778 113-114 GO:0000805 denotes X
T9779 122-127 SO_EXT:0000704 denotes genes
T9780 162-171 UBERON:0000922 denotes embryonic
T9781 225-233 PR_EXT:000006498 denotes dyskerin
T9782 235-239 PR_EXT:000006498 denotes Dkc1
T9783 242-261 CHEBI:14314 denotes glucose 6-phosphate
T9784 242-275 GO_PR_EXT:glucose_6_phosphate_dehydrogenase denotes glucose 6-phosphate dehydrogenase
T9785 277-281 GO_PR_EXT:glucose_6_phosphate_dehydrogenase denotes G6PD
T9786 288-301 PR_EXT:000005430 denotes choroideremia
T9787 303-306 PR_EXT:000005430 denotes Chm
T9788 308-313 SO_EXT:0000704 denotes genes
T9789 320-329 UBERON:0000922 denotes embryonic
T9790 330-339 GO_EXT:fatality_or_lethality denotes lethality
T9791 343-347 SO_EXT:sequence_nullness denotes null
T9792 348-352 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T9793 353-360 UBERON:0000922 denotes embryos
T9794 389-398 UBERON:0000922 denotes embryonic
T9795 407-414 UBERON:0000479 denotes tissues
T9796 424-430 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes Female
T9797 431-435 NCBITaxon:10088 denotes mice
T9798 445-454 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T9799 464-469 SO_EXT:0000704 denotes genes
T9800 498-510 GO:0000805 denotes X chromosome
T9801 500-510 GO_SO_EXT:chromosome denotes chromosome
T9802 516-519 GO:0016265 denotes die
T9803 538-545 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T9804 563-571 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T9805 582-592 GO_SO_EXT:chromosome denotes chromosome
T9806 615-619 PR_EXT:000004503 denotes Atrx
T9807 627-632 SO_EXT:0000704 denotes genes
T9808 657-661 CL_GO_EXT:cell denotes cell
T9809 662-668 GO_EXT:biological_growth_entity_or_process denotes growth
T9810 734-739 CL_GO_EXT:cell denotes cells
T9811 747-769 UBERON:0005292 denotes extraembryonic tissues
T9812 773-780 GO:0010467 denotes express
T9813 809-821 GO:0000805 denotes X chromosome
T9814 811-821 GO_SO_EXT:chromosome denotes chromosome
T9815 833-843 GO:0010467 denotes expression
T9816 860-864 PR_EXT:000004503 denotes Atrx
T9817 865-867 SO_EXT:wild_type_entity_or_quality denotes WT
T9818 868-874 SO_EXT:0001023 denotes allele
T9819 896-918 UBERON:0005292 denotes extraembryonic tissues
T9820 926-930 PR_EXT:000004503 denotes Atrx
T9821 939-946 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females

2_test

Id Subject Object Predicate Lexical cue
16628246-12400016-85799774 416-418 12400016 denotes 29
16628246-12169625-85799774 416-418 12169625 denotes 29
16628246-15242790-85799774 416-418 15242790 denotes 29
T78774 416-418 12400016 denotes 29
T99673 416-418 12169625 denotes 29
T50636 416-418 15242790 denotes 29

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9627 16-20 PR:000004503 denotes Atrx
T9628 106-112 NCBITaxon:39107 denotes murine
T9629 113-114 GO:0000805 denotes X
T9630 122-127 SO:0000704 denotes genes
T9631 162-171 UBERON:0000922 denotes embryonic
T9632 225-233 PR:000006498 denotes dyskerin
T9633 235-239 PR:000006498 denotes Dkc1
T9634 242-261 CHEBI:14314 denotes glucose 6-phosphate
T9635 288-301 PR:000005430 denotes choroideremia
T9636 303-306 PR:000005430 denotes Chm
T9637 308-313 SO:0000704 denotes genes
T9638 320-329 UBERON:0000922 denotes embryonic
T9639 353-360 UBERON:0000922 denotes embryos
T9640 389-398 UBERON:0000922 denotes embryonic
T9641 407-414 UBERON:0000479 denotes tissues
T9642 431-435 NCBITaxon:10088 denotes mice
T9643 464-469 SO:0000704 denotes genes
T9644 498-510 GO:0000805 denotes X chromosome
T9645 516-519 GO:0016265 denotes die
T9646 615-619 PR:000004503 denotes Atrx
T9647 627-632 SO:0000704 denotes genes
T9648 747-769 UBERON:0005292 denotes extraembryonic tissues
T9649 773-780 GO:0010467 denotes express
T9650 809-821 GO:0000805 denotes X chromosome
T9651 833-843 GO:0010467 denotes expression
T9652 860-864 PR:000004503 denotes Atrx
T9653 868-874 SO:0001023 denotes allele
T9654 896-918 UBERON:0005292 denotes extraembryonic tissues
T9655 926-930 PR:000004503 denotes Atrx