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PMC:1440874 / 37824-38931 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8335 0-2 PRP denotes We
T8336 3-7 VBP denotes show
T8337 8-12 IN denotes that
T8338 32-35 VBP denotes are
T8339 13-21 JJ denotes Atrxnull
T8340 27-31 NNS denotes mice
T8341 22-26 JJ denotes male
T8342 36-39 RB denotes not
T8343 40-46 JJ denotes viable
T8344 47-50 CC denotes and
T8345 51-58 NNS denotes embryos
T8346 59-62 VBP denotes die
T8347 63-65 IN denotes by
T8348 66-72 IN denotes around
T8349 73-76 CD denotes 9.5
T8350 77-80 NN denotes dpc
T8351 80-81 . denotes .
T8352 81-189 sentence denotes Before death, Atrxnull embryos exhibit a markedly reduced mitotic index, suggesting a proliferative defect.
T8353 82-88 IN denotes Before
T8354 113-120 VBP denotes exhibit
T8355 89-94 NN denotes death
T8356 94-96 , denotes ,
T8357 96-104 JJ denotes Atrxnull
T8358 105-112 NNS denotes embryos
T8359 121-122 DT denotes a
T8360 148-153 NN denotes index
T8361 123-131 RB denotes markedly
T8362 132-139 VBN denotes reduced
T8363 140-147 JJ denotes mitotic
T8364 153-155 , denotes ,
T8365 155-165 VBG denotes suggesting
T8366 166-167 DT denotes a
T8367 182-188 NN denotes defect
T8368 168-181 JJ denotes proliferative
T8369 188-189 . denotes .
T8370 189-536 sentence denotes Although the embryonic compartment of the conceptus appears initially normal, by 7.5 dpc Atrxnull embryos display abnormalities in development of the trophoblast, including a depletion in the population of TGCs surrounding the conceptus and a reduction in the size of the ectoplacental cone, which contains the diploid giant cell precursors [22].
T8371 190-198 IN denotes Although
T8372 242-249 VBZ denotes appears
T8373 199-202 DT denotes the
T8374 213-224 NN denotes compartment
T8375 203-212 JJ denotes embryonic
T8376 225-227 IN denotes of
T8377 228-231 DT denotes the
T8378 232-241 NN denotes conceptus
T8379 296-303 VBP denotes display
T8380 250-259 RB denotes initially
T8381 260-266 JJ denotes normal
T8382 266-268 , denotes ,
T8383 268-270 IN denotes by
T8384 271-274 CD denotes 7.5
T8385 275-278 NN denotes dpc
T8386 279-287 JJ denotes Atrxnull
T8387 288-295 NNS denotes embryos
T8388 304-317 NNS denotes abnormalities
T8389 318-320 IN denotes in
T8390 321-332 NN denotes development
T8391 333-335 IN denotes of
T8392 336-339 DT denotes the
T8393 340-351 NN denotes trophoblast
T8394 351-353 , denotes ,
T8395 353-362 VBG denotes including
T8396 363-364 DT denotes a
T8397 365-374 NN denotes depletion
T8398 375-377 IN denotes in
T8399 378-381 DT denotes the
T8400 382-392 NN denotes population
T8401 393-395 IN denotes of
T8402 396-400 NNS denotes TGCs
T8403 401-412 VBG denotes surrounding
T8404 413-416 DT denotes the
T8405 417-426 NN denotes conceptus
T8406 427-430 CC denotes and
T8407 431-432 DT denotes a
T8408 433-442 NN denotes reduction
T8409 443-445 IN denotes in
T8410 446-449 DT denotes the
T8411 450-454 NN denotes size
T8412 455-457 IN denotes of
T8413 458-461 DT denotes the
T8414 476-480 NN denotes cone
T8415 462-475 JJ denotes ectoplacental
T8416 480-482 , denotes ,
T8417 482-487 WDT denotes which
T8418 488-496 VBZ denotes contains
T8419 497-500 DT denotes the
T8420 520-530 NNS denotes precursors
T8421 501-508 NN denotes diploid
T8422 509-514 JJ denotes giant
T8423 515-519 NN denotes cell
T8424 531-532 -LRB- denotes [
T8425 532-534 CD denotes 22
T8426 534-535 -RRB- denotes ]
T8427 535-536 . denotes .
T8428 536-723 sentence denotes TGCs are highly differentiated, postmitotic cells that ultimately form an epithelial layer at the periphery of the placenta, which interfaces with the maternal cells of the decidua [23].
T8429 537-541 NNS denotes TGCs
T8430 542-545 VBP denotes are
T8431 546-552 RB denotes highly
T8432 553-567 VBN denotes differentiated
T8433 581-586 NNS denotes cells
T8434 567-569 , denotes ,
T8435 569-580 JJ denotes postmitotic
T8436 587-591 WDT denotes that
T8437 603-607 VBP denotes form
T8438 592-602 RB denotes ultimately
T8439 608-610 DT denotes an
T8440 622-627 NN denotes layer
T8441 611-621 JJ denotes epithelial
T8442 628-630 IN denotes at
T8443 631-634 DT denotes the
T8444 635-644 NN denotes periphery
T8445 645-647 IN denotes of
T8446 648-651 DT denotes the
T8447 652-660 NN denotes placenta
T8448 660-662 , denotes ,
T8449 662-667 WDT denotes which
T8450 668-678 VBZ denotes interfaces
T8451 679-683 IN denotes with
T8452 684-687 DT denotes the
T8453 697-702 NNS denotes cells
T8454 688-696 JJ denotes maternal
T8455 703-705 IN denotes of
T8456 706-709 DT denotes the
T8457 710-717 NN denotes decidua
T8458 718-719 -LRB- denotes [
T8459 719-721 CD denotes 23
T8460 721-722 -RRB- denotes ]
T8461 722-723 . denotes .
T8462 723-968 sentence denotes These highly invasive cells are important for mediating initial invasion of the uterine tissue, but are also involved in remodelling the maternal decidua after implantation and in secreting hormones that regulate fetal and maternal growth [24].
T8463 724-729 DT denotes These
T8464 746-751 NNS denotes cells
T8465 730-736 RB denotes highly
T8466 737-745 JJ denotes invasive
T8467 752-755 VBP denotes are
T8468 756-765 JJ denotes important
T8469 766-769 IN denotes for
T8470 770-779 VBG denotes mediating
T8471 780-787 JJ denotes initial
T8472 788-796 NN denotes invasion
T8473 797-799 IN denotes of
T8474 800-803 DT denotes the
T8475 812-818 NN denotes tissue
T8476 804-811 JJ denotes uterine
T8477 818-820 , denotes ,
T8478 820-823 CC denotes but
T8479 824-827 VBP denotes are
T8480 833-841 VBN denotes involved
T8481 828-832 RB denotes also
T8482 842-844 IN denotes in
T8483 845-856 VBG denotes remodelling
T8484 857-860 DT denotes the
T8485 870-877 NN denotes decidua
T8486 861-869 JJ denotes maternal
T8487 878-883 IN denotes after
T8488 884-896 NN denotes implantation
T8489 897-900 CC denotes and
T8490 901-903 IN denotes in
T8491 904-913 VBG denotes secreting
T8492 914-922 NNS denotes hormones
T8493 923-927 WDT denotes that
T8494 928-936 VBP denotes regulate
T8495 937-942 JJ denotes fetal
T8496 956-962 NN denotes growth
T8497 943-946 CC denotes and
T8498 947-955 JJ denotes maternal
T8499 963-964 -LRB- denotes [
T8500 964-966 CD denotes 24
T8501 966-967 -RRB- denotes ]
T8502 967-968 . denotes .
T8503 968-1107 sentence denotes Since Atrxnull embryos appear to implant normally, lethality is likely to arise due to a failure of TGC function later during development.
T8504 969-974 IN denotes Since
T8505 992-998 VBP denotes appear
T8506 975-983 JJ denotes Atrxnull
T8507 984-991 NNS denotes embryos
T8508 1030-1032 VBZ denotes is
T8509 999-1001 TO denotes to
T8510 1002-1009 VB denotes implant
T8511 1010-1018 RB denotes normally
T8512 1018-1020 , denotes ,
T8513 1020-1029 NN denotes lethality
T8514 1033-1039 JJ denotes likely
T8515 1040-1042 TO denotes to
T8516 1043-1048 VB denotes arise
T8517 1049-1052 IN denotes due
T8518 1053-1055 IN denotes to
T8519 1056-1057 DT denotes a
T8520 1058-1065 NN denotes failure
T8521 1066-1068 IN denotes of
T8522 1069-1072 NN denotes TGC
T8523 1073-1081 NN denotes function
T8524 1082-1087 RB denotes later
T8525 1088-1094 IN denotes during
T8526 1095-1106 NN denotes development
T8527 1106-1107 . denotes .
R4834 T8335 T8336 nsubj We,show
R4835 T8337 T8338 mark that,are
R4836 T8338 T8336 ccomp are,show
R4837 T8339 T8340 amod Atrxnull,mice
R4838 T8340 T8338 nsubj mice,are
R4839 T8341 T8340 amod male,mice
R4840 T8342 T8338 neg not,are
R4841 T8343 T8338 acomp viable,are
R4842 T8344 T8338 cc and,are
R4843 T8345 T8346 nsubj embryos,die
R4844 T8346 T8338 conj die,are
R4845 T8347 T8346 prep by,die
R4846 T8348 T8349 quantmod around,9.5
R4847 T8349 T8350 nummod 9.5,dpc
R4848 T8350 T8347 pobj dpc,by
R4849 T8351 T8336 punct .,show
R4850 T8353 T8354 prep Before,exhibit
R4851 T8355 T8353 pobj death,Before
R4852 T8356 T8354 punct ", ",exhibit
R4853 T8357 T8358 amod Atrxnull,embryos
R4854 T8358 T8354 nsubj embryos,exhibit
R4855 T8359 T8360 det a,index
R4856 T8360 T8354 dobj index,exhibit
R4857 T8361 T8362 advmod markedly,reduced
R4858 T8362 T8360 amod reduced,index
R4859 T8363 T8360 amod mitotic,index
R4860 T8364 T8354 punct ", ",exhibit
R4861 T8365 T8354 advcl suggesting,exhibit
R4862 T8366 T8367 det a,defect
R4863 T8367 T8365 dobj defect,suggesting
R4864 T8368 T8367 amod proliferative,defect
R4865 T8369 T8354 punct .,exhibit
R4866 T8371 T8372 mark Although,appears
R4867 T8372 T8379 advcl appears,display
R4868 T8373 T8374 det the,compartment
R4869 T8374 T8372 nsubj compartment,appears
R4870 T8375 T8374 amod embryonic,compartment
R4871 T8376 T8374 prep of,compartment
R4872 T8377 T8378 det the,conceptus
R4873 T8378 T8376 pobj conceptus,of
R4874 T8380 T8381 advmod initially,normal
R4875 T8381 T8372 oprd normal,appears
R4876 T8382 T8379 punct ", ",display
R4877 T8383 T8379 prep by,display
R4878 T8384 T8385 nummod 7.5,dpc
R4879 T8385 T8383 pobj dpc,by
R4880 T8386 T8387 amod Atrxnull,embryos
R4881 T8387 T8379 nsubj embryos,display
R4882 T8388 T8379 dobj abnormalities,display
R4883 T8389 T8388 prep in,abnormalities
R4884 T8390 T8389 pobj development,in
R4885 T8391 T8390 prep of,development
R4886 T8392 T8393 det the,trophoblast
R4887 T8393 T8391 pobj trophoblast,of
R4888 T8394 T8388 punct ", ",abnormalities
R4889 T8395 T8388 prep including,abnormalities
R4890 T8396 T8397 det a,depletion
R4891 T8397 T8395 pobj depletion,including
R4892 T8398 T8397 prep in,depletion
R4893 T8399 T8400 det the,population
R4894 T8400 T8398 pobj population,in
R4895 T8401 T8400 prep of,population
R4896 T8402 T8401 pobj TGCs,of
R4897 T8403 T8402 acl surrounding,TGCs
R4898 T8404 T8405 det the,conceptus
R4899 T8405 T8403 dobj conceptus,surrounding
R4900 T8406 T8397 cc and,depletion
R4901 T8407 T8408 det a,reduction
R4902 T8408 T8397 conj reduction,depletion
R4903 T8409 T8408 prep in,reduction
R4904 T8410 T8411 det the,size
R4905 T8411 T8409 pobj size,in
R4906 T8412 T8411 prep of,size
R4907 T8413 T8414 det the,cone
R4908 T8414 T8412 pobj cone,of
R4909 T8415 T8414 amod ectoplacental,cone
R4910 T8416 T8414 punct ", ",cone
R4911 T8417 T8418 dep which,contains
R4912 T8418 T8414 relcl contains,cone
R4913 T8419 T8420 det the,precursors
R4914 T8420 T8418 dobj precursors,contains
R4915 T8421 T8420 nmod diploid,precursors
R4916 T8422 T8420 amod giant,precursors
R4917 T8423 T8420 compound cell,precursors
R4918 T8424 T8425 punct [,22
R4919 T8425 T8379 parataxis 22,display
R4920 T8426 T8425 punct ],22
R4921 T8427 T8379 punct .,display
R4922 T8429 T8430 nsubj TGCs,are
R4923 T8431 T8432 advmod highly,differentiated
R4924 T8432 T8433 amod differentiated,cells
R4925 T8433 T8430 attr cells,are
R4926 T8434 T8433 punct ", ",cells
R4927 T8435 T8433 amod postmitotic,cells
R4928 T8436 T8437 dep that,form
R4929 T8437 T8433 relcl form,cells
R4930 T8438 T8437 advmod ultimately,form
R4931 T8439 T8440 det an,layer
R4932 T8440 T8437 dobj layer,form
R4933 T8441 T8440 amod epithelial,layer
R4934 T8442 T8437 prep at,form
R4935 T8443 T8444 det the,periphery
R4936 T8444 T8442 pobj periphery,at
R4937 T8445 T8444 prep of,periphery
R4938 T8446 T8447 det the,placenta
R4939 T8447 T8445 pobj placenta,of
R4940 T8448 T8437 punct ", ",form
R4941 T8449 T8450 dep which,interfaces
R4942 T8450 T8437 ccomp interfaces,form
R4943 T8451 T8450 prep with,interfaces
R4944 T8452 T8453 det the,cells
R4945 T8453 T8451 pobj cells,with
R4946 T8454 T8453 amod maternal,cells
R4947 T8455 T8453 prep of,cells
R4948 T8456 T8457 det the,decidua
R4949 T8457 T8455 pobj decidua,of
R4950 T8458 T8459 punct [,23
R4951 T8459 T8430 parataxis 23,are
R4952 T8460 T8459 punct ],23
R4953 T8461 T8430 punct .,are
R4954 T8463 T8464 det These,cells
R4955 T8464 T8467 nsubj cells,are
R4956 T8465 T8466 advmod highly,invasive
R4957 T8466 T8464 amod invasive,cells
R4958 T8468 T8467 acomp important,are
R4959 T8469 T8468 prep for,important
R4960 T8470 T8469 pcomp mediating,for
R4961 T8471 T8472 amod initial,invasion
R4962 T8472 T8470 dobj invasion,mediating
R4963 T8473 T8472 prep of,invasion
R4964 T8474 T8475 det the,tissue
R4965 T8475 T8473 pobj tissue,of
R4966 T8476 T8475 amod uterine,tissue
R4967 T8477 T8467 punct ", ",are
R4968 T8478 T8467 cc but,are
R4969 T8479 T8480 auxpass are,involved
R4970 T8480 T8467 conj involved,are
R4971 T8481 T8480 advmod also,involved
R4972 T8482 T8480 prep in,involved
R4973 T8483 T8482 pcomp remodelling,in
R4974 T8484 T8485 det the,decidua
R4975 T8485 T8483 dobj decidua,remodelling
R4976 T8486 T8485 amod maternal,decidua
R4977 T8487 T8483 prep after,remodelling
R4978 T8488 T8487 pobj implantation,after
R4979 T8489 T8482 cc and,in
R4980 T8490 T8482 conj in,in
R4981 T8491 T8490 pcomp secreting,in
R4982 T8492 T8491 dobj hormones,secreting
R4983 T8493 T8494 dep that,regulate
R4984 T8494 T8492 relcl regulate,hormones
R4985 T8495 T8496 amod fetal,growth
R4986 T8496 T8494 dobj growth,regulate
R4987 T8497 T8495 cc and,fetal
R4988 T8498 T8495 conj maternal,fetal
R4989 T8499 T8500 punct [,24
R4990 T8500 T8480 parataxis 24,involved
R4991 T8501 T8500 punct ],24
R4992 T8502 T8467 punct .,are
R4993 T8504 T8505 mark Since,appear
R4994 T8505 T8508 advcl appear,is
R4995 T8506 T8507 amod Atrxnull,embryos
R4996 T8507 T8505 nsubj embryos,appear
R4997 T8509 T8510 aux to,implant
R4998 T8510 T8505 xcomp implant,appear
R4999 T8511 T8510 advmod normally,implant
R5000 T8512 T8508 punct ", ",is
R5001 T8513 T8508 nsubj lethality,is
R5002 T8514 T8508 acomp likely,is
R5003 T8515 T8516 aux to,arise
R5004 T8516 T8514 xcomp arise,likely
R5005 T8517 T8516 prep due,arise
R5006 T8518 T8517 pcomp to,due
R5007 T8519 T8520 det a,failure
R5008 T8520 T8517 pobj failure,due
R5009 T8521 T8520 prep of,failure
R5010 T8522 T8523 compound TGC,function
R5011 T8523 T8521 pobj function,of
R5012 T8524 T8516 advmod later,arise
R5013 T8525 T8516 prep during,arise
R5014 T8526 T8525 pobj development,during
R5015 T8527 T8508 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8065 13-17 PR_EXT:000004503 denotes Atrx
T8066 17-21 SO_EXT:sequence_nullness denotes null
T8067 22-26 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T8068 27-31 NCBITaxon:10088 denotes mice
T8069 51-58 UBERON:0000922 denotes embryos
T8070 59-62 GO:0016265 denotes die
T8071 89-94 GO:0016265 denotes death
T8072 96-100 PR_EXT:000004503 denotes Atrx
T8073 100-104 SO_EXT:sequence_nullness denotes null
T8074 105-112 UBERON:0000922 denotes embryos
T8075 140-147 GO:0007067 denotes mitotic
T8076 168-181 GO_PATO_EXT:cell_proliferation_or_proliferativity denotes proliferative
T8077 203-212 UBERON:0000922 denotes embryonic
T8078 232-241 UBERON:0004716 denotes conceptus
T8079 279-283 PR_EXT:000004503 denotes Atrx
T8080 283-287 SO_EXT:sequence_nullness denotes null
T8081 288-295 UBERON:0000922 denotes embryos
T8082 340-351 UBERON:0000088 denotes trophoblast
T8083 396-400 CL:0002488 denotes TGCs
T8084 417-426 UBERON:0004716 denotes conceptus
T8085 462-480 UBERON:0004364 denotes ectoplacental cone
T8086 501-508 _FRAGMENT denotes diploid
T8087 515-519 CL:0000415 denotes cell
T8088 509-519 CL:0002488 denotes giant cell
T8089 515-519 CL_GO_EXT:cell denotes cell
T8090 537-541 CL:0002488 denotes TGCs
T8091 553-567 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T8092 573-580 GO:0007067 denotes mitotic
T8093 581-586 CL_GO_EXT:cell denotes cells
T8094 611-621 UBERON:0000483 denotes epithelial
T8095 652-660 UBERON:0001987 denotes placenta
T8096 697-702 CL_GO_EXT:cell denotes cells
T8097 710-717 UBERON:0002450 denotes decidua
T8098 746-751 CL_GO_EXT:cell denotes cells
T8099 804-811 UBERON:0000995 denotes uterine
T8100 812-818 UBERON:0000479 denotes tissue
T8101 870-877 UBERON:0002450 denotes decidua
T8102 884-896 GO:0007566 denotes implantation
T8103 904-913 GO:0046903 denotes secreting
T8104 914-922 CHEBI_GO_EXT:hormone denotes hormones
T8105 928-936 GO:0065007 denotes regulate
T8106 956-962 GO_EXT:biological_growth_entity_or_process denotes growth
T8107 975-979 PR_EXT:000004503 denotes Atrx
T8108 979-983 SO_EXT:sequence_nullness denotes null
T8109 984-991 UBERON:0000922 denotes embryos
T8110 1002-1009 GO:0007566 denotes implant
T8111 1020-1029 GO_EXT:fatality_or_lethality denotes lethality
T8112 1069-1072 CL:0002488 denotes TGC
R4819 T8087 T8086 _lexicallyChainedTo cell,diploid

2_test

Id Subject Object Predicate Lexical cue
16628246-6895086-85799762 532-534 6895086 denotes 22
16628246-10873707-85799763 719-721 10873707 denotes 23
16628246-7985020-85799764 964-966 7985020 denotes 24
T47412 532-534 6895086 denotes 22
T89259 719-721 10873707 denotes 23
T98024 964-966 7985020 denotes 24

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7868 13-17 PR:000004503 denotes Atrx
T7869 27-31 NCBITaxon:10088 denotes mice
T7870 51-58 UBERON:0000922 denotes embryos
T7871 59-62 GO:0016265 denotes die
T7872 89-94 GO:0016265 denotes death
T7873 96-100 PR:000004503 denotes Atrx
T7874 105-112 UBERON:0000922 denotes embryos
T7875 140-147 GO:0007067 denotes mitotic
T7876 203-212 UBERON:0000922 denotes embryonic
T7877 232-241 UBERON:0004716 denotes conceptus
T7878 279-283 PR:000004503 denotes Atrx
T7879 288-295 UBERON:0000922 denotes embryos
T7880 340-351 UBERON:0000088 denotes trophoblast
T7881 396-400 CL:0002488 denotes TGCs
T7882 417-426 UBERON:0004716 denotes conceptus
T7883 462-480 UBERON:0004364 denotes ectoplacental cone
T7884 501-508 _FRAGMENT denotes diploid
T7885 515-519 CL:0000415 denotes cell
T7886 509-519 CL:0002488 denotes giant cell
T7887 537-541 CL:0002488 denotes TGCs
T7888 573-580 GO:0007067 denotes mitotic
T7889 611-621 UBERON:0000483 denotes epithelial
T7890 652-660 UBERON:0001987 denotes placenta
T7891 710-717 UBERON:0002450 denotes decidua
T7892 804-811 UBERON:0000995 denotes uterine
T7893 812-818 UBERON:0000479 denotes tissue
T7894 870-877 UBERON:0002450 denotes decidua
T7895 884-896 GO:0007566 denotes implantation
T7896 904-913 GO:0046903 denotes secreting
T7897 928-936 GO:0065007 denotes regulate
T7898 975-979 PR:000004503 denotes Atrx
T7899 984-991 UBERON:0000922 denotes embryos
T7900 1002-1009 GO:0007566 denotes implant
T7901 1069-1072 CL:0002488 denotes TGC
R4814 T7885 T7884 _lexicallyChainedTo cell,diploid