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PMC:1440874 / 33433-35207 JSONTXT

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Id Subject Object Predicate Lexical cue
T6810 0-2 TO denotes To
T6811 3-14 VB denotes investigate
T6812 27-34 VBD denotes crossed
T6813 15-22 RB denotes further
T6814 22-24 , denotes ,
T6815 24-26 PRP denotes we
T6816 35-45 JJ denotes homozygous
T6817 61-68 NNS denotes females
T6818 46-55 NN denotes Atrx flox
T6819 56-60 NN denotes flox
T6820 55-56 HYPH denotes /
T6821 69-72 CC denotes and
T6822 73-83 JJ denotes homozygous
T6823 105-110 NNS denotes males
T6824 84-89 NN denotes GATA1
T6825 90-93 NN denotes cre
T6826 89-90 HYPH denotes -
T6827 94-104 JJ denotes transgenic
T6828 111-112 -LRB- denotes (
T6829 128-131 NN denotes cre
T6830 112-119 NN denotes Atrx WT
T6831 120-121 NN denotes Y
T6832 119-120 HYPH denotes /
T6833 121-122 : denotes ;
T6834 122-127 NN denotes GATA1
T6835 127-128 HYPH denotes -
T6836 132-133 SYM denotes +
T6837 133-134 HYPH denotes /
T6838 134-135 SYM denotes +
T6839 135-136 -RRB- denotes )
T6840 136-138 , denotes ,
T6841 138-143 WDT denotes which
T6842 153-161 VBN denotes expected
T6843 144-149 MD denotes would
T6844 150-152 VB denotes be
T6845 162-164 TO denotes to
T6846 165-170 VB denotes yield
T6847 171-175 RB denotes only
T6848 185-190 NNS denotes males
T6849 176-184 JJ denotes Atrxnull
T6850 191-192 -LRB- denotes (
T6851 209-212 NN denotes cre
T6852 192-200 JJ denotes Atrxnull
T6853 201-202 NN denotes Y
T6854 200-201 HYPH denotes /
T6855 202-203 : denotes ;
T6856 203-208 NN denotes GATA1
T6857 208-209 HYPH denotes -
T6858 213-214 SYM denotes +
T6859 214-215 HYPH denotes /
T6860 215-216 SYM denotes −
T6861 216-217 -RRB- denotes )
T6862 218-221 CC denotes and
T6863 222-229 NN denotes carrier
T6864 230-237 NNS denotes females
T6865 238-239 -LRB- denotes (
T6866 258-261 NN denotes cre
T6867 239-246 NN denotes Atrx WT
T6868 247-251 NN denotes null
T6869 246-247 HYPH denotes /
T6870 251-252 : denotes ;
T6871 252-257 NN denotes GATA1
T6872 257-258 HYPH denotes -
T6873 262-263 SYM denotes +
T6874 263-264 HYPH denotes /
T6875 264-265 SYM denotes −
T6876 265-266 -RRB- denotes )
T6877 266-267 . denotes .
T6878 267-337 sentence denotes In these carrier females, the Atrx WT allele is paternally inherited.
T6879 268-270 IN denotes In
T6880 327-336 VBN denotes inherited
T6881 271-276 DT denotes these
T6882 285-292 NNS denotes females
T6883 277-284 NN denotes carrier
T6884 292-294 , denotes ,
T6885 294-297 DT denotes the
T6886 306-312 NN denotes allele
T6887 298-305 NN denotes Atrx WT
T6888 313-315 VBZ denotes is
T6889 316-326 RB denotes paternally
T6890 336-337 . denotes .
T6891 337-529 sentence denotes Embryos were dissected in their deciduas at 7.5 dpc, and paraffin sections were stained with anti-ATRX antibody, along with sections from a wild-type 7.5 dpc embryo for comparison (Figure 8).
T6892 338-345 NNS denotes Embryos
T6893 351-360 VBN denotes dissected
T6894 346-350 VBD denotes were
T6895 361-363 IN denotes in
T6896 364-369 PRP$ denotes their
T6897 370-378 NNS denotes deciduas
T6898 379-381 IN denotes at
T6899 382-385 CD denotes 7.5
T6900 386-389 NN denotes dpc
T6901 389-391 , denotes ,
T6902 391-394 CC denotes and
T6903 395-403 NN denotes paraffin
T6904 404-412 NNS denotes sections
T6905 418-425 VBN denotes stained
T6906 413-417 VBD denotes were
T6907 426-430 IN denotes with
T6908 431-440 JJ denotes anti-ATRX
T6909 441-449 NN denotes antibody
T6910 449-451 , denotes ,
T6911 451-456 IN denotes along
T6912 462-470 NNS denotes sections
T6913 457-461 IN denotes with
T6914 471-475 IN denotes from
T6915 476-477 DT denotes a
T6916 496-502 NN denotes embryo
T6917 478-482 JJ denotes wild
T6918 483-487 NN denotes type
T6919 482-483 HYPH denotes -
T6920 488-491 CD denotes 7.5
T6921 492-495 NN denotes dpc
T6922 503-506 IN denotes for
T6923 507-517 NN denotes comparison
T6924 518-519 -LRB- denotes (
T6925 519-525 NN denotes Figure
T6926 526-527 CD denotes 8
T6927 527-528 -RRB- denotes )
T6928 528-529 . denotes .
T6929 529-673 sentence denotes As described above, Atrx expression was detected in every cell in the epiblast (embryo proper) region of wild-type 7.5 dpc embryos (Figure 8B).
T6930 530-532 IN denotes As
T6931 533-542 VBN denotes described
T6932 570-578 VBN denotes detected
T6933 543-548 RB denotes above
T6934 548-550 , denotes ,
T6935 550-554 NN denotes Atrx
T6936 555-565 NN denotes expression
T6937 566-569 VBD denotes was
T6938 579-581 IN denotes in
T6939 582-587 DT denotes every
T6940 588-592 NN denotes cell
T6941 593-595 IN denotes in
T6942 596-599 DT denotes the
T6943 625-631 NN denotes region
T6944 600-608 NN denotes epiblast
T6945 609-610 -LRB- denotes (
T6946 610-616 NN denotes embryo
T6947 617-623 JJ denotes proper
T6948 623-624 -RRB- denotes )
T6949 632-634 IN denotes of
T6950 635-639 JJ denotes wild
T6951 640-644 NN denotes type
T6952 639-640 HYPH denotes -
T6953 653-660 NNS denotes embryos
T6954 645-648 CD denotes 7.5
T6955 649-652 NN denotes dpc
T6956 661-662 -LRB- denotes (
T6957 669-671 NN denotes 8B
T6958 662-668 NN denotes Figure
T6959 671-672 -RRB- denotes )
T6960 672-673 . denotes .
T6961 673-1030 sentence denotes In contrast, the epiblast region of carrier female embryos was composed of a mosaic of small clusters of Atrx-positive cells (in which the Atrx null allele on Xm had been inactivated) and Atrx-negative cells (in which the Atrx WT allele on Xp had been inactivated), indicating that the Atrx gene was subject to normal random X-inactivation in the epiblast.
T6962 674-676 IN denotes In
T6963 737-745 VBN denotes composed
T6964 677-685 NN denotes contrast
T6965 685-687 , denotes ,
T6966 687-690 DT denotes the
T6967 700-706 NN denotes region
T6968 691-699 NN denotes epiblast
T6969 707-709 IN denotes of
T6970 710-717 NN denotes carrier
T6971 725-732 NNS denotes embryos
T6972 718-724 JJ denotes female
T6973 733-736 VBD denotes was
T6974 746-748 IN denotes of
T6975 749-750 DT denotes a
T6976 751-757 NN denotes mosaic
T6977 758-760 IN denotes of
T6978 761-766 JJ denotes small
T6979 767-775 NNS denotes clusters
T6980 776-778 IN denotes of
T6981 779-783 NN denotes Atrx
T6982 784-792 JJ denotes positive
T6983 783-784 HYPH denotes -
T6984 793-798 NNS denotes cells
T6985 799-800 -LRB- denotes (
T6986 800-802 IN denotes in
T6987 845-856 VBN denotes inactivated
T6988 803-808 WDT denotes which
T6989 809-812 DT denotes the
T6990 823-829 NN denotes allele
T6991 813-822 JJ denotes Atrx null
T6992 830-832 IN denotes on
T6993 833-835 NN denotes Xm
T6994 836-839 VBD denotes had
T6995 840-844 VBN denotes been
T6996 856-857 -RRB- denotes )
T6997 858-861 CC denotes and
T6998 862-866 NN denotes Atrx
T6999 867-875 JJ denotes negative
T7000 866-867 HYPH denotes -
T7001 876-881 NNS denotes cells
T7002 882-883 -LRB- denotes (
T7003 883-885 IN denotes in
T7004 926-937 VBN denotes inactivated
T7005 886-891 WDT denotes which
T7006 892-895 DT denotes the
T7007 904-910 NN denotes allele
T7008 896-903 NN denotes Atrx WT
T7009 911-913 IN denotes on
T7010 914-916 NN denotes Xp
T7011 917-920 VBD denotes had
T7012 921-925 VBN denotes been
T7013 937-938 -RRB- denotes )
T7014 938-940 , denotes ,
T7015 940-950 VBG denotes indicating
T7016 951-955 IN denotes that
T7017 970-973 VBD denotes was
T7018 956-959 DT denotes the
T7019 965-969 NN denotes gene
T7020 960-964 NN denotes Atrx
T7021 974-981 JJ denotes subject
T7022 982-984 IN denotes to
T7023 985-991 JJ denotes normal
T7024 1001-1013 NN denotes inactivation
T7025 992-998 JJ denotes random
T7026 999-1000 NN denotes X
T7027 1000-1001 HYPH denotes -
T7028 1014-1016 IN denotes in
T7029 1017-1020 DT denotes the
T7030 1021-1029 NN denotes epiblast
T7031 1029-1030 . denotes .
T7032 1030-1208 sentence denotes Remarkably, clear Atrx expression could also be detected in the extraembryonic tissues of carrier females, as shown in the extraembryonic-derived chorionic ectoderm (Figure 8C).
T7033 1031-1041 RB denotes Remarkably
T7034 1079-1087 VBN denotes detected
T7035 1041-1043 , denotes ,
T7036 1043-1048 JJ denotes clear
T7037 1054-1064 NN denotes expression
T7038 1049-1053 NN denotes Atrx
T7039 1065-1070 MD denotes could
T7040 1071-1075 RB denotes also
T7041 1076-1078 VB denotes be
T7042 1088-1090 IN denotes in
T7043 1091-1094 DT denotes the
T7044 1110-1117 NNS denotes tissues
T7045 1095-1109 JJ denotes extraembryonic
T7046 1118-1120 IN denotes of
T7047 1121-1128 NN denotes carrier
T7048 1129-1136 NNS denotes females
T7049 1136-1138 , denotes ,
T7050 1138-1140 IN denotes as
T7051 1141-1146 VBN denotes shown
T7052 1147-1149 IN denotes in
T7053 1150-1153 DT denotes the
T7054 1187-1195 NN denotes ectoderm
T7055 1154-1168 JJ denotes extraembryonic
T7056 1169-1176 VBN denotes derived
T7057 1168-1169 HYPH denotes -
T7058 1177-1186 JJ denotes chorionic
T7059 1196-1197 -LRB- denotes (
T7060 1204-1206 NN denotes 8C
T7061 1197-1203 NN denotes Figure
T7062 1206-1207 -RRB- denotes )
T7063 1207-1208 . denotes .
T7064 1208-1289 sentence denotes Atrx expression could be detected in almost all cells of the chorionic ectoderm.
T7065 1209-1213 NN denotes Atrx
T7066 1214-1224 NN denotes expression
T7067 1234-1242 VBN denotes detected
T7068 1225-1230 MD denotes could
T7069 1231-1233 VB denotes be
T7070 1243-1245 IN denotes in
T7071 1246-1252 RB denotes almost
T7072 1253-1256 DT denotes all
T7073 1257-1262 NNS denotes cells
T7074 1263-1265 IN denotes of
T7075 1266-1269 DT denotes the
T7076 1280-1288 NN denotes ectoderm
T7077 1270-1279 JJ denotes chorionic
T7078 1288-1289 . denotes .
T7079 1289-1402 sentence denotes Atrx expression was also clearly detected in other extraembryonic structures, including TGCs (unpublished data).
T7080 1290-1294 NN denotes Atrx
T7081 1295-1305 NN denotes expression
T7082 1323-1331 VBN denotes detected
T7083 1306-1309 VBD denotes was
T7084 1310-1314 RB denotes also
T7085 1315-1322 RB denotes clearly
T7086 1332-1334 IN denotes in
T7087 1335-1340 JJ denotes other
T7088 1356-1366 NNS denotes structures
T7089 1341-1355 JJ denotes extraembryonic
T7090 1366-1368 , denotes ,
T7091 1368-1377 VBG denotes including
T7092 1378-1382 NNS denotes TGCs
T7093 1383-1384 -LRB- denotes (
T7094 1396-1400 NNS denotes data
T7095 1384-1395 JJ denotes unpublished
T7096 1400-1401 -RRB- denotes )
T7097 1401-1402 . denotes .
T7098 1402-1545 sentence denotes Escape from silencing of an Xp-inherited Atrx WT allele was also observed in the chorionic ectoderm of carrier females at 8.5 dpc (Figure S4).
T7099 1403-1409 NN denotes Escape
T7100 1468-1476 VBN denotes observed
T7101 1410-1414 IN denotes from
T7102 1415-1424 NN denotes silencing
T7103 1425-1427 IN denotes of
T7104 1428-1430 DT denotes an
T7105 1452-1458 NN denotes allele
T7106 1431-1433 NN denotes Xp
T7107 1434-1443 VBN denotes inherited
T7108 1433-1434 HYPH denotes -
T7109 1444-1451 NN denotes Atrx WT
T7110 1459-1462 VBD denotes was
T7111 1463-1467 RB denotes also
T7112 1477-1479 IN denotes in
T7113 1480-1483 DT denotes the
T7114 1494-1502 NN denotes ectoderm
T7115 1484-1493 JJ denotes chorionic
T7116 1503-1505 IN denotes of
T7117 1506-1513 NN denotes carrier
T7118 1514-1521 NNS denotes females
T7119 1522-1524 IN denotes at
T7120 1525-1528 CD denotes 8.5
T7121 1529-1532 NN denotes dpc
T7122 1533-1534 -LRB- denotes (
T7123 1541-1543 NN denotes S4
T7124 1534-1540 NN denotes Figure
T7125 1543-1544 -RRB- denotes )
T7126 1544-1545 . denotes .
T7127 1545-1774 sentence denotes Thus, although random X-inactivation occurs normally within the epiblast, the Atrx WT allele (inherited on the Xp chromosome) escaped the normal imprinted X-inactivation in the extraembryonic compartment of some carrier females.
T7128 1546-1550 RB denotes Thus
T7129 1672-1679 VBD denotes escaped
T7130 1550-1552 , denotes ,
T7131 1552-1560 IN denotes although
T7132 1583-1589 VBZ denotes occurs
T7133 1561-1567 JJ denotes random
T7134 1570-1582 NN denotes inactivation
T7135 1568-1569 NN denotes X
T7136 1569-1570 HYPH denotes -
T7137 1590-1598 RB denotes normally
T7138 1599-1605 IN denotes within
T7139 1606-1609 DT denotes the
T7140 1610-1618 NN denotes epiblast
T7141 1618-1620 , denotes ,
T7142 1620-1623 DT denotes the
T7143 1632-1638 NN denotes allele
T7144 1624-1631 NN denotes Atrx WT
T7145 1639-1640 -LRB- denotes (
T7146 1640-1649 VBN denotes inherited
T7147 1650-1652 IN denotes on
T7148 1653-1656 DT denotes the
T7149 1660-1670 NN denotes chromosome
T7150 1657-1659 NN denotes Xp
T7151 1670-1671 -RRB- denotes )
T7152 1680-1683 DT denotes the
T7153 1703-1715 NN denotes inactivation
T7154 1684-1690 JJ denotes normal
T7155 1691-1700 VBN denotes imprinted
T7156 1701-1702 NN denotes X
T7157 1702-1703 HYPH denotes -
T7158 1716-1718 IN denotes in
T7159 1719-1722 DT denotes the
T7160 1738-1749 NN denotes compartment
T7161 1723-1737 JJ denotes extraembryonic
T7162 1750-1752 IN denotes of
T7163 1753-1757 DT denotes some
T7164 1766-1773 NNS denotes females
T7165 1758-1765 NN denotes carrier
T7166 1773-1774 . denotes .
R4172 T6810 T6811 aux To,investigate
R4173 T6811 T6812 advcl investigate,crossed
R4174 T6813 T6811 advmod further,investigate
R4175 T6814 T6812 punct ", ",crossed
R4176 T6815 T6812 nsubj we,crossed
R4177 T6816 T6817 amod homozygous,females
R4178 T6817 T6812 dobj females,crossed
R4179 T6818 T6819 compound Atrx flox,flox
R4180 T6819 T6817 compound flox,females
R4181 T6820 T6819 punct /,flox
R4182 T6821 T6817 cc and,females
R4183 T6822 T6823 amod homozygous,males
R4184 T6823 T6817 conj males,females
R4185 T6824 T6825 nmod GATA1,cre
R4186 T6825 T6823 nmod cre,males
R4187 T6826 T6825 punct -,cre
R4188 T6827 T6823 amod transgenic,males
R4189 T6828 T6829 punct (,cre
R4190 T6829 T6823 parataxis cre,males
R4191 T6830 T6831 compound Atrx WT,Y
R4192 T6831 T6829 dep Y,cre
R4193 T6832 T6831 punct /,Y
R4194 T6833 T6829 punct ;,cre
R4195 T6834 T6829 compound GATA1,cre
R4196 T6835 T6829 punct -,cre
R4197 T6836 T6829 punct +,cre
R4198 T6837 T6829 punct /,cre
R4199 T6838 T6829 punct +,cre
R4200 T6839 T6829 punct ),cre
R4201 T6840 T6812 punct ", ",crossed
R4202 T6841 T6842 dep which,expected
R4203 T6842 T6812 advcl expected,crossed
R4204 T6843 T6842 aux would,expected
R4205 T6844 T6842 auxpass be,expected
R4206 T6845 T6846 aux to,yield
R4207 T6846 T6842 xcomp yield,expected
R4208 T6847 T6848 advmod only,males
R4209 T6848 T6846 dobj males,yield
R4210 T6849 T6848 amod Atrxnull,males
R4211 T6850 T6851 punct (,cre
R4212 T6851 T6848 parataxis cre,males
R4213 T6852 T6853 amod Atrxnull,Y
R4214 T6853 T6851 dep Y,cre
R4215 T6854 T6853 punct /,Y
R4216 T6855 T6851 punct ;,cre
R4217 T6856 T6851 compound GATA1,cre
R4218 T6857 T6851 punct -,cre
R4219 T6858 T6851 punct +,cre
R4220 T6859 T6851 punct /,cre
R4221 T6860 T6851 punct −,cre
R4222 T6861 T6851 punct ),cre
R4223 T6862 T6848 cc and,males
R4224 T6863 T6864 compound carrier,females
R4225 T6864 T6848 conj females,males
R4226 T6865 T6866 punct (,cre
R4227 T6866 T6864 parataxis cre,females
R4228 T6867 T6868 compound Atrx WT,null
R4229 T6868 T6866 dep null,cre
R4230 T6869 T6868 punct /,null
R4231 T6870 T6866 punct ;,cre
R4232 T6871 T6866 compound GATA1,cre
R4233 T6872 T6866 punct -,cre
R4234 T6873 T6866 punct +,cre
R4235 T6874 T6866 punct /,cre
R4236 T6875 T6866 punct −,cre
R4237 T6876 T6866 punct ),cre
R4238 T6877 T6812 punct .,crossed
R4239 T6879 T6880 prep In,inherited
R4240 T6881 T6882 det these,females
R4241 T6882 T6879 pobj females,In
R4242 T6883 T6882 compound carrier,females
R4243 T6884 T6880 punct ", ",inherited
R4244 T6885 T6886 det the,allele
R4245 T6886 T6880 nsubjpass allele,inherited
R4246 T6887 T6886 compound Atrx WT,allele
R4247 T6888 T6880 auxpass is,inherited
R4248 T6889 T6880 advmod paternally,inherited
R4249 T6890 T6880 punct .,inherited
R4250 T6892 T6893 nsubjpass Embryos,dissected
R4251 T6894 T6893 auxpass were,dissected
R4252 T6895 T6893 prep in,dissected
R4253 T6896 T6897 poss their,deciduas
R4254 T6897 T6895 pobj deciduas,in
R4255 T6898 T6893 prep at,dissected
R4256 T6899 T6900 nummod 7.5,dpc
R4257 T6900 T6898 pobj dpc,at
R4258 T6901 T6893 punct ", ",dissected
R4259 T6902 T6893 cc and,dissected
R4260 T6903 T6904 compound paraffin,sections
R4261 T6904 T6905 nsubjpass sections,stained
R4262 T6905 T6893 conj stained,dissected
R4263 T6906 T6905 auxpass were,stained
R4264 T6907 T6905 prep with,stained
R4265 T6908 T6909 amod anti-ATRX,antibody
R4266 T6909 T6907 pobj antibody,with
R4267 T6910 T6905 punct ", ",stained
R4268 T6911 T6912 cc along,sections
R4269 T6912 T6905 dep sections,stained
R4270 T6913 T6911 dep with,along
R4271 T6914 T6912 prep from,sections
R4272 T6915 T6916 det a,embryo
R4273 T6916 T6914 pobj embryo,from
R4274 T6917 T6918 amod wild,type
R4275 T6918 T6916 nmod type,embryo
R4276 T6919 T6918 punct -,type
R4277 T6920 T6921 nummod 7.5,dpc
R4278 T6921 T6916 compound dpc,embryo
R4279 T6922 T6912 prep for,sections
R4280 T6923 T6922 pobj comparison,for
R4281 T6924 T6925 punct (,Figure
R4282 T6925 T6905 parataxis Figure,stained
R4283 T6926 T6925 nummod 8,Figure
R4284 T6927 T6925 punct ),Figure
R4285 T6928 T6905 punct .,stained
R4286 T6930 T6931 mark As,described
R4287 T6931 T6932 advcl described,detected
R4288 T6933 T6931 advmod above,described
R4289 T6934 T6932 punct ", ",detected
R4290 T6935 T6936 compound Atrx,expression
R4291 T6936 T6932 nsubjpass expression,detected
R4292 T6937 T6932 auxpass was,detected
R4293 T6938 T6932 prep in,detected
R4294 T6939 T6940 det every,cell
R4295 T6940 T6938 pobj cell,in
R4296 T6941 T6940 prep in,cell
R4297 T6942 T6943 det the,region
R4298 T6943 T6941 pobj region,in
R4299 T6944 T6943 nmod epiblast,region
R4300 T6945 T6944 punct (,epiblast
R4301 T6946 T6944 appos embryo,epiblast
R4302 T6947 T6946 amod proper,embryo
R4303 T6948 T6943 punct ),region
R4304 T6949 T6943 prep of,region
R4305 T6950 T6951 amod wild,type
R4306 T6951 T6953 nmod type,embryos
R4307 T6952 T6951 punct -,type
R4308 T6953 T6949 pobj embryos,of
R4309 T6954 T6955 nummod 7.5,dpc
R4310 T6955 T6953 compound dpc,embryos
R4311 T6956 T6957 punct (,8B
R4312 T6957 T6932 parataxis 8B,detected
R4313 T6958 T6957 compound Figure,8B
R4314 T6959 T6957 punct ),8B
R4315 T6960 T6932 punct .,detected
R4316 T6962 T6963 prep In,composed
R4317 T6964 T6962 pobj contrast,In
R4318 T6965 T6963 punct ", ",composed
R4319 T6966 T6967 det the,region
R4320 T6967 T6963 nsubjpass region,composed
R4321 T6968 T6967 compound epiblast,region
R4322 T6969 T6967 prep of,region
R4323 T6970 T6971 nmod carrier,embryos
R4324 T6971 T6969 pobj embryos,of
R4325 T6972 T6971 amod female,embryos
R4326 T6973 T6963 auxpass was,composed
R4327 T6974 T6963 prep of,composed
R4328 T6975 T6976 det a,mosaic
R4329 T6976 T6974 pobj mosaic,of
R4330 T6977 T6976 prep of,mosaic
R4331 T6978 T6979 amod small,clusters
R4332 T6979 T6977 pobj clusters,of
R4333 T6980 T6979 prep of,clusters
R4334 T6981 T6982 npadvmod Atrx,positive
R4335 T6982 T6984 amod positive,cells
R4336 T6983 T6982 punct -,positive
R4337 T6984 T6980 pobj cells,of
R4338 T6985 T6984 punct (,cells
R4339 T6986 T6987 prep in,inactivated
R4340 T6987 T6984 relcl inactivated,cells
R4341 T6988 T6986 pobj which,in
R4342 T6989 T6990 det the,allele
R4343 T6990 T6987 nsubjpass allele,inactivated
R4344 T6991 T6990 amod Atrx null,allele
R4345 T6992 T6990 prep on,allele
R4346 T6993 T6992 pobj Xm,on
R4347 T6994 T6987 aux had,inactivated
R4348 T6995 T6987 auxpass been,inactivated
R4349 T6996 T6984 punct ),cells
R4350 T6997 T6984 cc and,cells
R4351 T6998 T6999 npadvmod Atrx,negative
R4352 T6999 T7001 amod negative,cells
R4353 T7000 T6999 punct -,negative
R4354 T7001 T6984 conj cells,cells
R4355 T7002 T7001 punct (,cells
R4356 T7003 T7004 prep in,inactivated
R4357 T7004 T7001 relcl inactivated,cells
R4358 T7005 T7003 pobj which,in
R4359 T7006 T7007 det the,allele
R4360 T7007 T7004 nsubjpass allele,inactivated
R4361 T7008 T7007 compound Atrx WT,allele
R4362 T7009 T7007 prep on,allele
R4363 T7010 T7009 pobj Xp,on
R4364 T7011 T7004 aux had,inactivated
R4365 T7012 T7004 auxpass been,inactivated
R4366 T7013 T6963 punct ),composed
R4367 T7014 T6963 punct ", ",composed
R4368 T7015 T6963 advcl indicating,composed
R4369 T7016 T7017 mark that,was
R4370 T7017 T7015 ccomp was,indicating
R4371 T7018 T7019 det the,gene
R4372 T7019 T7017 nsubj gene,was
R4373 T7020 T7019 compound Atrx,gene
R4374 T7021 T7017 acomp subject,was
R4375 T7022 T7021 prep to,subject
R4376 T7023 T7024 amod normal,inactivation
R4377 T7024 T7022 pobj inactivation,to
R4378 T7025 T7024 amod random,inactivation
R4379 T7026 T7024 compound X,inactivation
R4380 T7027 T7024 punct -,inactivation
R4381 T7028 T7017 prep in,was
R4382 T7029 T7030 det the,epiblast
R4383 T7030 T7028 pobj epiblast,in
R4384 T7031 T6963 punct .,composed
R4385 T7033 T7034 advmod Remarkably,detected
R4386 T7035 T7034 punct ", ",detected
R4387 T7036 T7037 amod clear,expression
R4388 T7037 T7034 nsubjpass expression,detected
R4389 T7038 T7037 compound Atrx,expression
R4390 T7039 T7034 aux could,detected
R4391 T7040 T7034 advmod also,detected
R4392 T7041 T7034 auxpass be,detected
R4393 T7042 T7034 prep in,detected
R4394 T7043 T7044 det the,tissues
R4395 T7044 T7042 pobj tissues,in
R4396 T7045 T7044 amod extraembryonic,tissues
R4397 T7046 T7044 prep of,tissues
R4398 T7047 T7048 compound carrier,females
R4399 T7048 T7046 pobj females,of
R4400 T7049 T7034 punct ", ",detected
R4401 T7050 T7051 mark as,shown
R4402 T7051 T7034 advcl shown,detected
R4403 T7052 T7051 prep in,shown
R4404 T7053 T7054 det the,ectoderm
R4405 T7054 T7052 pobj ectoderm,in
R4406 T7055 T7056 amod extraembryonic,derived
R4407 T7056 T7054 amod derived,ectoderm
R4408 T7057 T7056 punct -,derived
R4409 T7058 T7054 amod chorionic,ectoderm
R4410 T7059 T7060 punct (,8C
R4411 T7060 T7034 parataxis 8C,detected
R4412 T7061 T7060 compound Figure,8C
R4413 T7062 T7060 punct ),8C
R4414 T7063 T7034 punct .,detected
R4415 T7065 T7066 compound Atrx,expression
R4416 T7066 T7067 nsubjpass expression,detected
R4417 T7068 T7067 aux could,detected
R4418 T7069 T7067 auxpass be,detected
R4419 T7070 T7067 prep in,detected
R4420 T7071 T7072 advmod almost,all
R4421 T7072 T7073 nummod all,cells
R4422 T7073 T7070 pobj cells,in
R4423 T7074 T7073 prep of,cells
R4424 T7075 T7076 det the,ectoderm
R4425 T7076 T7074 pobj ectoderm,of
R4426 T7077 T7076 amod chorionic,ectoderm
R4427 T7078 T7067 punct .,detected
R4428 T7080 T7081 compound Atrx,expression
R4429 T7081 T7082 nsubjpass expression,detected
R4430 T7083 T7082 auxpass was,detected
R4431 T7084 T7082 advmod also,detected
R4432 T7085 T7082 advmod clearly,detected
R4433 T7086 T7082 prep in,detected
R4434 T7087 T7088 amod other,structures
R4435 T7088 T7086 pobj structures,in
R4436 T7089 T7088 amod extraembryonic,structures
R4437 T7090 T7088 punct ", ",structures
R4438 T7091 T7088 prep including,structures
R4439 T7092 T7091 pobj TGCs,including
R4440 T7093 T7094 punct (,data
R4441 T7094 T7082 meta data,detected
R4442 T7095 T7094 amod unpublished,data
R4443 T7096 T7094 punct ),data
R4444 T7097 T7082 punct .,detected
R4445 T7099 T7100 nsubjpass Escape,observed
R4446 T7101 T7099 prep from,Escape
R4447 T7102 T7101 pobj silencing,from
R4448 T7103 T7102 prep of,silencing
R4449 T7104 T7105 det an,allele
R4450 T7105 T7103 pobj allele,of
R4451 T7106 T7107 npadvmod Xp,inherited
R4452 T7107 T7105 amod inherited,allele
R4453 T7108 T7107 punct -,inherited
R4454 T7109 T7105 compound Atrx WT,allele
R4455 T7110 T7100 auxpass was,observed
R4456 T7111 T7100 advmod also,observed
R4457 T7112 T7100 prep in,observed
R4458 T7113 T7114 det the,ectoderm
R4459 T7114 T7112 pobj ectoderm,in
R4460 T7115 T7114 amod chorionic,ectoderm
R4461 T7116 T7114 prep of,ectoderm
R4462 T7117 T7118 compound carrier,females
R4463 T7118 T7116 pobj females,of
R4464 T7119 T7100 prep at,observed
R4465 T7120 T7121 nummod 8.5,dpc
R4466 T7121 T7119 pobj dpc,at
R4467 T7122 T7123 punct (,S4
R4468 T7123 T7100 parataxis S4,observed
R4469 T7124 T7123 compound Figure,S4
R4470 T7125 T7123 punct ),S4
R4471 T7126 T7100 punct .,observed
R4472 T7128 T7129 advmod Thus,escaped
R4473 T7130 T7129 punct ", ",escaped
R4474 T7131 T7132 mark although,occurs
R4475 T7132 T7129 advcl occurs,escaped
R4476 T7133 T7134 amod random,inactivation
R4477 T7134 T7132 nsubj inactivation,occurs
R4478 T7135 T7134 compound X,inactivation
R4479 T7136 T7134 punct -,inactivation
R4480 T7137 T7132 advmod normally,occurs
R4481 T7138 T7132 prep within,occurs
R4482 T7139 T7140 det the,epiblast
R4483 T7140 T7138 pobj epiblast,within
R4484 T7141 T7129 punct ", ",escaped
R4485 T7142 T7143 det the,allele
R4486 T7143 T7129 nsubj allele,escaped
R4487 T7144 T7143 compound Atrx WT,allele
R4488 T7145 T7143 punct (,allele
R4489 T7146 T7143 acl inherited,allele
R4490 T7147 T7146 prep on,inherited
R4491 T7148 T7149 det the,chromosome
R4492 T7149 T7147 pobj chromosome,on
R4493 T7150 T7149 compound Xp,chromosome
R4494 T7151 T7129 punct ),escaped
R4495 T7152 T7153 det the,inactivation
R4496 T7153 T7129 dobj inactivation,escaped
R4497 T7154 T7153 amod normal,inactivation
R4498 T7155 T7153 amod imprinted,inactivation
R4499 T7156 T7153 compound X,inactivation
R4500 T7157 T7153 punct -,inactivation
R4501 T7158 T7153 prep in,inactivation
R4502 T7159 T7160 det the,compartment
R4503 T7160 T7158 pobj compartment,in
R4504 T7161 T7160 amod extraembryonic,compartment
R4505 T7162 T7160 prep of,compartment
R4506 T7163 T7164 det some,females
R4507 T7164 T7162 pobj females,of
R4508 T7165 T7164 compound carrier,females
R4509 T7166 T7129 punct .,escaped

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6381 46-50 PR_EXT:000004503 denotes Atrx
T6382 51-55 SO:0000359 denotes flox
T6383 56-60 SO:0000359 denotes flox
T6384 61-68 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T6385 84-89 PR_EXT:000007857 denotes GATA1
T6386 94-104 SO_EXT:transgenic_entity denotes transgenic
T6387 105-110 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T6388 112-116 PR_EXT:000004503 denotes Atrx
T6389 117-119 SO_EXT:wild_type_entity_or_quality denotes WT
T6390 120-121 GO:0000806 denotes Y
T6391 122-127 PR_EXT:000007857 denotes GATA1
T6392 132-133 SO_EXT:normal_or_wild_type_or_present denotes +
T6393 134-135 SO_EXT:normal_or_wild_type_or_present denotes +
T6394 176-180 PR_EXT:000004503 denotes Atrx
T6395 180-184 SO_EXT:sequence_nullness denotes null
T6396 185-190 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T6397 192-196 PR_EXT:000004503 denotes Atrx
T6398 196-200 SO_EXT:sequence_nullness denotes null
T6399 201-202 GO:0000806 denotes Y
T6400 203-208 PR_EXT:000007857 denotes GATA1
T6401 213-214 SO_EXT:normal_or_wild_type_or_present denotes +
T6402 215-216 SO_EXT:sequence_nullness_or_absence denotes −
T6403 230-237 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T6404 239-243 PR_EXT:000004503 denotes Atrx
T6405 244-246 SO_EXT:wild_type_entity_or_quality denotes WT
T6406 247-251 SO_EXT:sequence_nullness denotes null
T6407 252-257 PR_EXT:000007857 denotes GATA1
T6408 262-263 SO_EXT:normal_or_wild_type_or_present denotes +
T6409 264-265 SO_EXT:sequence_nullness_or_absence denotes −
T6410 285-292 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T6411 298-302 PR_EXT:000004503 denotes Atrx
T6412 303-305 SO_EXT:wild_type_entity_or_quality denotes WT
T6413 306-312 SO_EXT:0001023 denotes allele
T6414 338-345 UBERON:0000922 denotes Embryos
T6415 370-378 UBERON:0002450 denotes deciduas
T6416 436-440 PR_EXT:000004503 denotes ATRX
T6417 441-449 GO:0042571 denotes antibody
T6418 478-487 SO_EXT:wild_type_entity_or_quality denotes wild-type
T6419 496-502 UBERON:0000922 denotes embryo
T6420 550-554 PR_EXT:000004503 denotes Atrx
T6421 555-565 GO:0010467 denotes expression
T6422 588-592 CL_GO_EXT:cell denotes cell
T6423 600-608 UBERON:0002532 denotes epiblast
T6424 610-616 UBERON:0000922 denotes embryo
T6425 635-644 SO_EXT:wild_type_entity_or_quality denotes wild-type
T6426 653-660 UBERON:0000922 denotes embryos
T6427 691-699 UBERON:0002532 denotes epiblast
T6428 718-724 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes female
T6429 725-732 UBERON:0000922 denotes embryos
T6430 767-778 _FRAGMENT denotes clusters of
T6431 793-798 UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population denotes cells
T6432 779-783 PR_EXT:000004503 denotes Atrx
T6433 793-798 CL_GO_EXT:cell denotes cells
T6434 813-817 PR_EXT:000004503 denotes Atrx
T6435 818-822 SO_EXT:sequence_nullness denotes null
T6436 823-829 SO_EXT:0001023 denotes allele
T6437 862-866 PR_EXT:000004503 denotes Atrx
T6438 876-881 CL_GO_EXT:cell denotes cells
T6439 896-900 PR_EXT:000004503 denotes Atrx
T6440 901-903 SO_EXT:wild_type_entity_or_quality denotes WT
T6441 904-910 SO_EXT:0001023 denotes allele
T6442 960-964 PR_EXT:000004503 denotes Atrx
T6443 965-969 SO_EXT:0000704 denotes gene
T6444 999-1000 GO:0000805 denotes X
T6445 999-1013 GO:0009048 denotes X-inactivation
T6446 1021-1029 UBERON:0002532 denotes epiblast
T6447 1049-1053 PR_EXT:000004503 denotes Atrx
T6448 1054-1064 GO:0010467 denotes expression
T6449 1095-1117 UBERON:0005292 denotes extraembryonic tissues
T6450 1129-1136 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T6451 1159-1168 UBERON:0000922 denotes embryonic
T6452 1177-1195 UBERON:0003374 denotes chorionic ectoderm
T6453 1209-1213 PR_EXT:000004503 denotes Atrx
T6454 1214-1224 GO:0010467 denotes expression
T6455 1257-1262 CL_GO_EXT:cell denotes cells
T6456 1257-1265 _FRAGMENT denotes cells of
T6457 1280-1288 CL:0000221 denotes ectoderm
T6458 1270-1288 UBERON:0003374 denotes chorionic ectoderm
T6459 1290-1294 PR_EXT:000004503 denotes Atrx
T6460 1295-1305 GO:0010467 denotes expression
T6461 1341-1366 UBERON:0000478 denotes extraembryonic structures
T6462 1378-1382 CL:0002488 denotes TGCs
T6463 1415-1424 GO:0016458 denotes silencing
T6464 1444-1448 PR_EXT:000004503 denotes Atrx
T6465 1449-1451 SO_EXT:wild_type_entity_or_quality denotes WT
T6466 1452-1458 SO_EXT:0001023 denotes allele
T6467 1484-1502 UBERON:0003374 denotes chorionic ectoderm
T6468 1514-1521 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T6469 1568-1569 GO:0000805 denotes X
T6470 1568-1582 GO:0009048 denotes X-inactivation
T6471 1610-1618 UBERON:0002532 denotes epiblast
T6472 1624-1628 PR_EXT:000004503 denotes Atrx
T6473 1629-1631 SO_EXT:wild_type_entity_or_quality denotes WT
T6474 1632-1638 SO_EXT:0001023 denotes allele
T6475 1660-1670 GO_SO_EXT:chromosome denotes chromosome
T6476 1691-1715 GO:0060819 denotes imprinted X-inactivation
T6477 1701-1702 GO:0000805 denotes X
T6478 1728-1737 UBERON:0000922 denotes embryonic
T6479 1766-1773 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
R3858 T6431 T6430 _lexicallyChainedTo cells,clusters of
R3859 T6457 T6456 _lexicallyChainedTo ectoderm,cells of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6217 46-50 PR:000004503 denotes Atrx
T6218 51-55 SO:0000359 denotes flox
T6219 56-60 SO:0000359 denotes flox
T6220 84-89 PR:000007857 denotes GATA1
T6221 112-116 PR:000004503 denotes Atrx
T6222 120-121 GO:0000806 denotes Y
T6223 122-127 PR:000007857 denotes GATA1
T6224 176-180 PR:000004503 denotes Atrx
T6225 192-196 PR:000004503 denotes Atrx
T6226 201-202 GO:0000806 denotes Y
T6227 203-208 PR:000007857 denotes GATA1
T6228 239-243 PR:000004503 denotes Atrx
T6229 252-257 PR:000007857 denotes GATA1
T6230 298-302 PR:000004503 denotes Atrx
T6231 306-312 SO:0001023 denotes allele
T6232 338-345 UBERON:0000922 denotes Embryos
T6233 370-378 UBERON:0002450 denotes deciduas
T6234 436-440 PR:000004503 denotes ATRX
T6235 441-449 GO:0042571 denotes antibody
T6236 496-502 UBERON:0000922 denotes embryo
T6237 550-554 PR:000004503 denotes Atrx
T6238 555-565 GO:0010467 denotes expression
T6239 600-608 UBERON:0002532 denotes epiblast
T6240 610-616 UBERON:0000922 denotes embryo
T6241 653-660 UBERON:0000922 denotes embryos
T6242 691-699 UBERON:0002532 denotes epiblast
T6243 725-732 UBERON:0000922 denotes embryos
T6244 779-783 PR:000004503 denotes Atrx
T6245 813-817 PR:000004503 denotes Atrx
T6246 823-829 SO:0001023 denotes allele
T6247 862-866 PR:000004503 denotes Atrx
T6248 896-900 PR:000004503 denotes Atrx
T6249 904-910 SO:0001023 denotes allele
T6250 960-964 PR:000004503 denotes Atrx
T6251 965-969 SO:0000704 denotes gene
T6252 999-1000 GO:0000805 denotes X
T6253 999-1013 GO:0009048 denotes X-inactivation
T6254 1021-1029 UBERON:0002532 denotes epiblast
T6255 1049-1053 PR:000004503 denotes Atrx
T6256 1054-1064 GO:0010467 denotes expression
T6257 1095-1117 UBERON:0005292 denotes extraembryonic tissues
T6258 1159-1168 UBERON:0000922 denotes embryonic
T6259 1177-1195 UBERON:0003374 denotes chorionic ectoderm
T6260 1209-1213 PR:000004503 denotes Atrx
T6261 1214-1224 GO:0010467 denotes expression
T6262 1257-1265 _FRAGMENT denotes cells of
T6263 1280-1288 CL:0000221 denotes ectoderm
T6264 1270-1288 UBERON:0003374 denotes chorionic ectoderm
T6265 1290-1294 PR:000004503 denotes Atrx
T6266 1295-1305 GO:0010467 denotes expression
T6267 1341-1366 UBERON:0000478 denotes extraembryonic structures
T6268 1378-1382 CL:0002488 denotes TGCs
T6269 1415-1424 GO:0016458 denotes silencing
T6270 1444-1448 PR:000004503 denotes Atrx
T6271 1452-1458 SO:0001023 denotes allele
T6272 1484-1502 UBERON:0003374 denotes chorionic ectoderm
T6273 1568-1569 GO:0000805 denotes X
T6274 1568-1582 GO:0009048 denotes X-inactivation
T6275 1610-1618 UBERON:0002532 denotes epiblast
T6276 1624-1628 PR:000004503 denotes Atrx
T6277 1632-1638 SO:0001023 denotes allele
T6278 1691-1715 GO:0060819 denotes imprinted X-inactivation
T6279 1701-1702 GO:0000805 denotes X
T6280 1728-1737 UBERON:0000922 denotes embryonic
R3855 T6263 T6262 _lexicallyChainedTo ectoderm,cells of