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observation of 8.5 dpc embryos revealed that, in contrast to the basically normal although delayed morphology of the embryo itself, the extraembryonic tissues of Atrxnull conceptuses appeared highly disorganised. When embryos were removed from deciduas, the surrounding trophectoderm layer appeared dramatically reduced in Atrxnull embryos relative to wild-type littermates, and the underlying ectoplacental cone appeared reduced and abnormally shaped (Figure 7A). Vacated deciduas surrounding 8.5 dpc wild-type and Atrxnull embryos were bisected and analysed by WMISH for expression of placental lactogen-1 (Pl-1), a marker of terminally differentiated TGCs. The number of Pl-1-expressing cells attached to the decidual wall after removal of the embryo is an indication of the density of trophoblast cells surrounding each implantation site [17]. We found that the population of Pl-1-expressing cells was depleted in the decidual implantation sites containing Atrxnull embryos relative to those containing wild-type littermates (Figure 7B); this was also apparent at 7.5 dpc, as determined by immunohistochemical staining of paraffin sections of embryos in deciduas with an anti-Pl-1 antibody (Figure 7C). A TGC deficiency in the absence of Atrx is consistent with the observation that Atrx is highly expressed in giant cells surrounding wild-type 7.5 dpc embryos (Figure 5E)."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T5361","span":{"begin":35,"end":42},"obj":"UBERON:0000922"},{"id":"T5362","span":{"begin":129,"end":135},"obj":"UBERON:0000922"},{"id":"T5363","span":{"begin":148,"end":170},"obj":"UBERON:0005292"},{"id":"T5364","span":{"begin":174,"end":178},"obj":"PR_EXT:000004503"},{"id":"T5365","span":{"begin":178,"end":182},"obj":"SO_EXT:sequence_nullness"},{"id":"T5366","span":{"begin":183,"end":194},"obj":"UBERON:0004716"},{"id":"T5367","span":{"begin":230,"end":237},"obj":"UBERON:0000922"},{"id":"T5368","span":{"begin":256,"end":264},"obj":"UBERON:0002450"},{"id":"T5369","span":{"begin":282,"end":301},"obj":"UBERON:0004345"},{"id":"T5370","span":{"begin":335,"end":339},"obj":"PR_EXT:000004503"},{"id":"T5371","span":{"begin":339,"end":343},"obj":"SO_EXT:sequence_nullness"},{"id":"T5372","span":{"begin":344,"end":351},"obj":"UBERON:0000922"},{"id":"T5373","span":{"begin":364,"end":373},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T5374","span":{"begin":406,"end":424},"obj":"UBERON:0004364"},{"id":"T5375","span":{"begin":485,"end":493},"obj":"UBERON:0002450"},{"id":"T5376","span":{"begin":514,"end":523},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T5377","span":{"begin":528,"end":532},"obj":"PR_EXT:000004503"},{"id":"T5378","span":{"begin":532,"end":536},"obj":"SO_EXT:sequence_nullness"},{"id":"T5379","span":{"begin":537,"end":544},"obj":"UBERON:0000922"},{"id":"T5380","span":{"begin":585,"end":595},"obj":"GO:0010467"},{"id":"T5381","span":{"begin":599,"end":608},"obj":"UBERON:0001987"},{"id":"T5382","span":{"begin":599,"end":617},"obj":"CHEBI:81588"},{"id":"T5383","span":{"begin":599,"end":619},"obj":"PR_EXT:000013543"},{"id":"T5384","span":{"begin":621,"end":623},"obj":"CHEBI:81588"},{"id":"T5385","span":{"begin":621,"end":625},"obj":"PR_EXT:000013543"},{"id":"T5386","span":{"begin":630,"end":636},"obj":"CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag"},{"id":"T5387","span":{"begin":651,"end":665},"obj":"GO_PATO_RO_EXT:developmental_differentiation_process_or_quality"},{"id":"T5388","span":{"begin":666,"end":670},"obj":"CL:0002488"},{"id":"T5389","span":{"begin":686,"end":688},"obj":"CHEBI:81588"},{"id":"T5390","span":{"begin":686,"end":690},"obj":"PR_EXT:000013543"},{"id":"T5391","span":{"begin":691,"end":701},"obj":"GO:0010467"},{"id":"T5392","span":{"begin":702,"end":707},"obj":"CL_GO_EXT:cell"},{"id":"T5393","span":{"begin":724,"end":732},"obj":"UBERON:0002450"},{"id":"T5394","span":{"begin":733,"end":737},"obj":"UBERON:0000060"},{"id":"T5395","span":{"begin":759,"end":765},"obj":"UBERON:0000922"},{"id":"T5396","span":{"begin":801,"end":812},"obj":"UBERON:0000088"},{"id":"T5397","span":{"begin":801,"end":818},"obj":"CL:0000351"},{"id":"T5398","span":{"begin":813,"end":818},"obj":"CL_GO_EXT:cell"},{"id":"T5399","span":{"begin":836,"end":848},"obj":"GO:0007566"},{"id":"T5400","span":{"begin":878,"end":891},"obj":"_FRAGMENT"},{"id":"T5401","span":{"begin":908,"end":913},"obj":"UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population"},{"id":"T5402","span":{"begin":892,"end":894},"obj":"CHEBI:81588"},{"id":"T5403","span":{"begin":892,"end":896},"obj":"PR_EXT:000013543"},{"id":"T5404","span":{"begin":897,"end":907},"obj":"GO:0010467"},{"id":"T5405","span":{"begin":908,"end":913},"obj":"CL_GO_EXT:cell"},{"id":"T5406","span":{"begin":934,"end":942},"obj":"UBERON:0002450"},{"id":"T5407","span":{"begin":943,"end":955},"obj":"GO:0007566"},{"id":"T5408","span":{"begin":973,"end":977},"obj":"PR_EXT:000004503"},{"id":"T5409","span":{"begin":977,"end":981},"obj":"SO_EXT:sequence_nullness"},{"id":"T5410","span":{"begin":982,"end":989},"obj":"UBERON:0000922"},{"id":"T5411","span":{"begin":1019,"end":1028},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T5412","span":{"begin":1159,"end":1166},"obj":"UBERON:0000922"},{"id":"T5413","span":{"begin":1170,"end":1178},"obj":"UBERON:0002450"},{"id":"T5414","span":{"begin":1192,"end":1194},"obj":"CHEBI:81588"},{"id":"T5415","span":{"begin":1192,"end":1196},"obj":"PR_EXT:000013543"},{"id":"T5416","span":{"begin":1197,"end":1205},"obj":"GO:0042571"},{"id":"T5417","span":{"begin":1221,"end":1224},"obj":"CL:0002488"},{"id":"T5418","span":{"begin":1254,"end":1258},"obj":"PR_EXT:000004503"},{"id":"T5419","span":{"begin":1299,"end":1303},"obj":"PR_EXT:000004503"},{"id":"T5420","span":{"begin":1314,"end":1323},"obj":"GO:0010467"},{"id":"T5421","span":{"begin":1327,"end":1338},"obj":"CL:0002488"},{"id":"T5422","span":{"begin":1333,"end":1338},"obj":"CL_GO_EXT:cell"},{"id":"T5423","span":{"begin":1351,"end":1360},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T5424","span":{"begin":1369,"end":1376},"obj":"UBERON:0000922"}],"relations":[{"id":"R3284","pred":"_lexicallyChainedTo","subj":"T5401","obj":"T5400"}],"text":"Whole-mount observation of 8.5 dpc embryos revealed that, in contrast to the basically normal although delayed morphology of the embryo itself, the extraembryonic tissues of Atrxnull conceptuses appeared highly disorganised. When embryos were removed from deciduas, the surrounding trophectoderm layer appeared dramatically reduced in Atrxnull embryos relative to wild-type littermates, and the underlying ectoplacental cone appeared reduced and abnormally shaped (Figure 7A). Vacated deciduas surrounding 8.5 dpc wild-type and Atrxnull embryos were bisected and analysed by WMISH for expression of placental lactogen-1 (Pl-1), a marker of terminally differentiated TGCs. The number of Pl-1-expressing cells attached to the decidual wall after removal of the embryo is an indication of the density of trophoblast cells surrounding each implantation site [17]. We found that the population of Pl-1-expressing cells was depleted in the decidual implantation sites containing Atrxnull embryos relative to those containing wild-type littermates (Figure 7B); this was also apparent at 7.5 dpc, as determined by immunohistochemical staining of paraffin sections of embryos in deciduas with an anti-Pl-1 antibody (Figure 7C). A TGC deficiency in the absence of Atrx is consistent with the observation that Atrx is highly expressed in giant cells surrounding wild-type 7.5 dpc embryos (Figure 5E)."}
2_test
{"project":"2_test","denotations":[{"id":"16628246-10611232-85799756","span":{"begin":855,"end":857},"obj":"10611232"},{"id":"T19776","span":{"begin":855,"end":857},"obj":"10611232"}],"text":"Whole-mount observation of 8.5 dpc embryos revealed that, in contrast to the basically normal although delayed morphology of the embryo itself, the extraembryonic tissues of Atrxnull conceptuses appeared highly disorganised. When embryos were removed from deciduas, the surrounding trophectoderm layer appeared dramatically reduced in Atrxnull embryos relative to wild-type littermates, and the underlying ectoplacental cone appeared reduced and abnormally shaped (Figure 7A). Vacated deciduas surrounding 8.5 dpc wild-type and Atrxnull embryos were bisected and analysed by WMISH for expression of placental lactogen-1 (Pl-1), a marker of terminally differentiated TGCs. The number of Pl-1-expressing cells attached to the decidual wall after removal of the embryo is an indication of the density of trophoblast cells surrounding each implantation site [17]. We found that the population of Pl-1-expressing cells was depleted in the decidual implantation sites containing Atrxnull embryos relative to those containing wild-type littermates (Figure 7B); this was also apparent at 7.5 dpc, as determined by immunohistochemical staining of paraffin sections of embryos in deciduas with an anti-Pl-1 antibody (Figure 7C). A TGC deficiency in the absence of Atrx is consistent with the observation that Atrx is highly expressed in giant cells surrounding wild-type 7.5 dpc embryos (Figure 5E)."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T5263","span":{"begin":35,"end":42},"obj":"UBERON:0000922"},{"id":"T5264","span":{"begin":129,"end":135},"obj":"UBERON:0000922"},{"id":"T5265","span":{"begin":148,"end":170},"obj":"UBERON:0005292"},{"id":"T5266","span":{"begin":174,"end":178},"obj":"PR:000004503"},{"id":"T5267","span":{"begin":183,"end":194},"obj":"UBERON:0004716"},{"id":"T5268","span":{"begin":230,"end":237},"obj":"UBERON:0000922"},{"id":"T5269","span":{"begin":256,"end":264},"obj":"UBERON:0002450"},{"id":"T5270","span":{"begin":282,"end":301},"obj":"UBERON:0004345"},{"id":"T5271","span":{"begin":335,"end":339},"obj":"PR:000004503"},{"id":"T5272","span":{"begin":344,"end":351},"obj":"UBERON:0000922"},{"id":"T5273","span":{"begin":406,"end":424},"obj":"UBERON:0004364"},{"id":"T5274","span":{"begin":485,"end":493},"obj":"UBERON:0002450"},{"id":"T5275","span":{"begin":528,"end":532},"obj":"PR:000004503"},{"id":"T5276","span":{"begin":537,"end":544},"obj":"UBERON:0000922"},{"id":"T5277","span":{"begin":585,"end":595},"obj":"GO:0010467"},{"id":"T5278","span":{"begin":599,"end":608},"obj":"UBERON:0001987"},{"id":"T5279","span":{"begin":599,"end":617},"obj":"CHEBI:81588"},{"id":"T5280","span":{"begin":599,"end":619},"obj":"PR:000013543"},{"id":"T5281","span":{"begin":621,"end":623},"obj":"CHEBI:81588"},{"id":"T5282","span":{"begin":621,"end":625},"obj":"PR:000013543"},{"id":"T5283","span":{"begin":666,"end":670},"obj":"CL:0002488"},{"id":"T5284","span":{"begin":686,"end":688},"obj":"CHEBI:81588"},{"id":"T5285","span":{"begin":686,"end":690},"obj":"PR:000013543"},{"id":"T5286","span":{"begin":691,"end":701},"obj":"GO:0010467"},{"id":"T5287","span":{"begin":724,"end":732},"obj":"UBERON:0002450"},{"id":"T5288","span":{"begin":733,"end":737},"obj":"UBERON:0000060"},{"id":"T5289","span":{"begin":759,"end":765},"obj":"UBERON:0000922"},{"id":"T5290","span":{"begin":801,"end":812},"obj":"UBERON:0000088"},{"id":"T5291","span":{"begin":801,"end":818},"obj":"CL:0000351"},{"id":"T5292","span":{"begin":836,"end":848},"obj":"GO:0007566"},{"id":"T5293","span":{"begin":892,"end":894},"obj":"CHEBI:81588"},{"id":"T5294","span":{"begin":892,"end":896},"obj":"PR:000013543"},{"id":"T5295","span":{"begin":897,"end":907},"obj":"GO:0010467"},{"id":"T5296","span":{"begin":934,"end":942},"obj":"UBERON:0002450"},{"id":"T5297","span":{"begin":943,"end":955},"obj":"GO:0007566"},{"id":"T5298","span":{"begin":973,"end":977},"obj":"PR:000004503"},{"id":"T5299","span":{"begin":982,"end":989},"obj":"UBERON:0000922"},{"id":"T5300","span":{"begin":1159,"end":1166},"obj":"UBERON:0000922"},{"id":"T5301","span":{"begin":1170,"end":1178},"obj":"UBERON:0002450"},{"id":"T5302","span":{"begin":1192,"end":1194},"obj":"CHEBI:81588"},{"id":"T5303","span":{"begin":1192,"end":1196},"obj":"PR:000013543"},{"id":"T5304","span":{"begin":1197,"end":1205},"obj":"GO:0042571"},{"id":"T5305","span":{"begin":1221,"end":1224},"obj":"CL:0002488"},{"id":"T5306","span":{"begin":1254,"end":1258},"obj":"PR:000004503"},{"id":"T5307","span":{"begin":1299,"end":1303},"obj":"PR:000004503"},{"id":"T5308","span":{"begin":1314,"end":1323},"obj":"GO:0010467"},{"id":"T5309","span":{"begin":1327,"end":1338},"obj":"CL:0002488"},{"id":"T5310","span":{"begin":1369,"end":1376},"obj":"UBERON:0000922"}],"text":"Whole-mount observation of 8.5 dpc embryos revealed that, in contrast to the basically normal although delayed morphology of the embryo itself, the extraembryonic tissues of Atrxnull conceptuses appeared highly disorganised. When embryos were removed from deciduas, the surrounding trophectoderm layer appeared dramatically reduced in Atrxnull embryos relative to wild-type littermates, and the underlying ectoplacental cone appeared reduced and abnormally shaped (Figure 7A). Vacated deciduas surrounding 8.5 dpc wild-type and Atrxnull embryos were bisected and analysed by WMISH for expression of placental lactogen-1 (Pl-1), a marker of terminally differentiated TGCs. The number of Pl-1-expressing cells attached to the decidual wall after removal of the embryo is an indication of the density of trophoblast cells surrounding each implantation site [17]. We found that the population of Pl-1-expressing cells was depleted in the decidual implantation sites containing Atrxnull embryos relative to those containing wild-type littermates (Figure 7B); this was also apparent at 7.5 dpc, as determined by immunohistochemical staining of paraffin sections of embryos in deciduas with an anti-Pl-1 antibody (Figure 7C). A TGC deficiency in the absence of Atrx is consistent with the observation that Atrx is highly expressed in giant cells surrounding wild-type 7.5 dpc embryos (Figure 5E)."}