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Id Subject Object Predicate Lexical cue
T4508 292-300 VBD denotes revealed
T4457 3-14 VB denotes investigate
T4458 112-121 VBN denotes dissected
T4459 15-18 DT denotes the
T4460 19-29 NN denotes morphology
T4461 30-32 IN denotes of
T4462 33-41 JJ denotes Atrxnull
T4463 42-49 NNS denotes embryos
T4464 50-55 RB denotes prior
T4465 56-58 IN denotes to
T4466 59-64 NN denotes death
T4467 64-66 , denotes ,
T4468 66-73 NNS denotes embryos
T4469 74-78 IN denotes from
T4470 79-82 DT denotes the
T4471 89-96 NNS denotes crosses
T4472 83-88 JJ denotes above
T4473 97-101 VBD denotes were
T4474 102-111 RB denotes initially
T4475 122-124 IN denotes in
T4476 125-130 PRP$ denotes their
T4477 131-139 NNS denotes deciduas
T4478 140-142 IN denotes at
T4479 143-146 CD denotes 7.5
T4480 147-150 NN denotes dpc
T4481 150-152 , denotes ,
T4482 152-155 CC denotes and
T4483 156-164 NN denotes paraffin
T4484 165-173 NNS denotes sections
T4485 179-186 VBN denotes stained
T4486 174-178 VBD denotes were
T4487 187-191 IN denotes with
T4488 192-204 NN denotes haematoxylin
T4489 205-206 -LRB- denotes (
T4490 213-215 NN denotes 5A
T4491 206-212 NN denotes Figure
T4492 215-216 -RRB- denotes )
T4493 217-219 CC denotes or
T4494 220-224 IN denotes with
T4495 225-227 DT denotes an
T4496 238-246 NN denotes antibody
T4497 228-237 JJ denotes anti-ATRX
T4498 247-248 -LRB- denotes (
T4499 255-257 NN denotes 5B
T4500 248-254 NN denotes Figure
T4501 257-258 SYM denotes –
T4502 258-260 NN denotes 5E
T4503 260-261 -RRB- denotes )
T4504 261-262 . denotes .
T4505 262-373 sentence denotes Immunohistochemical staining revealed that Atrx was widely expressed in wild-type 7.5 dpc embryos (Figure 5B).
T4506 263-282 JJ denotes Immunohistochemical
T4507 283-291 NN denotes staining
T4509 301-305 IN denotes that
T4510 322-331 VBN denotes expressed
T4511 306-310 NN denotes Atrx
T4512 311-314 VBD denotes was
T4513 315-321 RB denotes widely
T4514 332-334 IN denotes in
T4515 335-339 JJ denotes wild
T4516 340-344 NN denotes type
T4517 339-340 HYPH denotes -
T4518 353-360 NNS denotes embryos
T4519 345-348 CD denotes 7.5
T4520 349-352 NN denotes dpc
T4521 361-362 -LRB- denotes (
T4522 369-371 NN denotes 5B
T4523 362-368 NN denotes Figure
T4524 371-372 -RRB- denotes )
T4525 372-373 . denotes .
T4526 373-461 sentence denotes Expression was highest in the embryonic region (Figure 5C) and the chorion (Figure 5D).
T4527 374-384 NN denotes Expression
T4528 385-388 VBD denotes was
T4529 389-396 JJS denotes highest
T4530 397-399 IN denotes in
T4531 400-403 DT denotes the
T4532 414-420 NN denotes region
T4533 404-413 JJ denotes embryonic
T4534 421-422 -LRB- denotes (
T4535 429-431 NN denotes 5C
T4536 422-428 NN denotes Figure
T4537 431-432 -RRB- denotes )
T4538 433-436 CC denotes and
T4539 437-440 DT denotes the
T4540 441-448 NN denotes chorion
T4541 449-450 -LRB- denotes (
T4542 457-459 NN denotes 5D
T4543 450-456 NN denotes Figure
T4544 459-460 -RRB- denotes )
T4545 460-461 . denotes .
T4546 461-588 sentence denotes Detectable but lower levels of expression were observed in the ectoplacental cone (Figure 5D) and surrounding decidual tissue.
T4547 462-472 JJ denotes Detectable
T4548 483-489 NNS denotes levels
T4549 473-476 CC denotes but
T4550 477-482 JJR denotes lower
T4551 509-517 VBN denotes observed
T4552 490-492 IN denotes of
T4553 493-503 NN denotes expression
T4554 504-508 VBD denotes were
T4555 518-520 IN denotes in
T4556 521-524 DT denotes the
T4557 539-543 NN denotes cone
T4558 525-538 JJ denotes ectoplacental
T4559 544-545 -LRB- denotes (
T4560 552-554 NN denotes 5D
T4561 545-551 NN denotes Figure
T4562 554-555 -RRB- denotes )
T4563 556-559 CC denotes and
T4564 560-571 VBG denotes surrounding
T4565 581-587 NN denotes tissue
T4566 572-580 JJ denotes decidual
T4567 587-588 . denotes .
T4568 588-724 sentence denotes We also observed very high levels of Atrx expression in trophoblast giant cells (TGCs) surrounding the Reichert's membrane (Figure 5E).
T4569 589-591 PRP denotes We
T4570 597-605 VBD denotes observed
T4571 592-596 RB denotes also
T4572 606-610 RB denotes very
T4573 611-615 JJ denotes high
T4574 616-622 NNS denotes levels
T4575 623-625 IN denotes of
T4576 626-630 NN denotes Atrx
T4577 631-641 NN denotes expression
T4578 642-644 IN denotes in
T4579 645-656 NN denotes trophoblast
T4580 663-668 NNS denotes cells
T4581 657-662 JJ denotes giant
T4582 669-670 -LRB- denotes (
T4583 670-674 NNS denotes TGCs
T4584 674-675 -RRB- denotes )
T4585 676-687 VBG denotes surrounding
T4586 688-691 DT denotes the
T4587 703-711 NN denotes membrane
T4588 692-700 NN denotes Reichert
T4589 700-702 POS denotes 's
T4590 712-713 -LRB- denotes (
T4591 720-722 NN denotes 5E
T4592 713-719 NN denotes Figure
T4593 722-723 -RRB- denotes )
T4594 723-724 . denotes .
T4595 724-879 sentence denotes Within the large nuclei of these TGCs, the typical nuclear association of Atrx with blocks of pericentromeric heterochromatin [15] was clearly observable.
T4596 725-731 IN denotes Within
T4597 856-859 VBD denotes was
T4598 732-735 DT denotes the
T4599 742-748 NNS denotes nuclei
T4600 736-741 JJ denotes large
T4601 749-751 IN denotes of
T4602 752-757 DT denotes these
T4603 758-762 NNS denotes TGCs
T4604 762-764 , denotes ,
T4605 764-767 DT denotes the
T4606 784-795 NN denotes association
T4607 768-775 JJ denotes typical
T4608 776-783 JJ denotes nuclear
T4609 796-798 IN denotes of
T4610 799-803 NN denotes Atrx
T4611 804-808 IN denotes with
T4612 809-815 NNS denotes blocks
T4613 816-818 IN denotes of
T4614 819-834 JJ denotes pericentromeric
T4615 835-850 NN denotes heterochromatin
T4616 851-852 -LRB- denotes [
T4617 852-854 CD denotes 15
T4618 854-855 -RRB- denotes ]
T4619 860-867 RB denotes clearly
T4620 868-878 JJ denotes observable
T4621 878-879 . denotes .
T4622 879-1124 sentence denotes Only background staining was seen in the corresponding Atrxnull embryonic tissues (Figure 5B–5D), while expression in the surrounding decidual tissue (of maternal origin) was normal and served as an antibody staining control (unpublished data).
T4623 880-884 RB denotes Only
T4624 896-904 NN denotes staining
T4625 885-895 NN denotes background
T4626 909-913 VBN denotes seen
T4627 905-908 VBD denotes was
T4628 914-916 IN denotes in
T4629 917-920 DT denotes the
T4630 954-961 NNS denotes tissues
T4631 921-934 VBG denotes corresponding
T4632 935-943 JJ denotes Atrxnull
T4633 944-953 JJ denotes embryonic
T4634 962-963 -LRB- denotes (
T4635 970-972 NN denotes 5B
T4636 963-969 NN denotes Figure
T4637 972-973 SYM denotes –
T4638 973-975 NN denotes 5D
T4639 975-976 -RRB- denotes )
T4640 976-978 , denotes ,
T4641 978-983 IN denotes while
T4642 1051-1054 VBD denotes was
T4643 984-994 NN denotes expression
T4644 995-997 IN denotes in
T4645 998-1001 DT denotes the
T4646 1023-1029 NN denotes tissue
T4647 1002-1013 VBG denotes surrounding
T4648 1014-1022 JJ denotes decidual
T4649 1030-1031 -LRB- denotes (
T4650 1031-1033 IN denotes of
T4651 1034-1042 JJ denotes maternal
T4652 1043-1049 NN denotes origin
T4653 1049-1050 -RRB- denotes )
T4654 1055-1061 JJ denotes normal
T4655 1062-1065 CC denotes and
T4656 1066-1072 VBD denotes served
T4657 1073-1075 IN denotes as
T4658 1076-1078 DT denotes an
T4659 1097-1104 NN denotes control
T4660 1079-1087 NN denotes antibody
T4661 1088-1096 NN denotes staining
T4662 1105-1106 -LRB- denotes (
T4663 1118-1122 NNS denotes data
T4664 1106-1117 JJ denotes unpublished
T4665 1122-1123 -RRB- denotes )
T4666 1123-1124 . denotes .
T4667 1124-1302 sentence denotes Morphologically, 7.5 dpc Atrxnull embryos were dramatically reduced in size and appeared developmentally retarded relative to stage-matched wild-type embryos (Figure 5A and 5B).
T4668 1125-1140 RB denotes Morphologically
T4669 1185-1192 VBN denotes reduced
T4670 1140-1142 , denotes ,
T4671 1142-1145 CD denotes 7.5
T4672 1146-1149 NNS denotes dpc
T4673 1159-1166 NNS denotes embryos
T4674 1150-1158 JJ denotes Atrxnull
T4675 1167-1171 VBD denotes were
T4676 1172-1184 RB denotes dramatically
T4677 1193-1195 IN denotes in
T4678 1196-1200 NN denotes size
T4679 1201-1204 CC denotes and
T4680 1205-1213 VBD denotes appeared
T4681 1214-1229 RB denotes developmentally
T4682 1230-1238 JJ denotes retarded
T4683 1239-1247 JJ denotes relative
T4684 1248-1250 IN denotes to
T4685 1251-1256 NN denotes stage
T4686 1257-1264 VBN denotes matched
T4687 1256-1257 HYPH denotes -
T4688 1275-1282 NNS denotes embryos
T4689 1265-1269 JJ denotes wild
T4690 1270-1274 NN denotes type
T4691 1269-1270 HYPH denotes -
T4692 1283-1284 -LRB- denotes (
T4693 1291-1293 NN denotes 5A
T4694 1284-1290 NN denotes Figure
T4695 1294-1297 CC denotes and
T4696 1298-1300 NN denotes 5B
T4697 1300-1301 -RRB- denotes )
T4698 1301-1302 . denotes .
T4699 1302-1452 sentence denotes However, despite their reduced size, the general morphology and organisation of embryonic structures in Atrxnull conceptuses appeared grossly normal.
T4700 1303-1310 RB denotes However
T4701 1428-1436 VBD denotes appeared
T4702 1310-1312 , denotes ,
T4703 1312-1319 IN denotes despite
T4704 1320-1325 PRP$ denotes their
T4705 1334-1338 NN denotes size
T4706 1326-1333 VBN denotes reduced
T4707 1338-1340 , denotes ,
T4708 1340-1343 DT denotes the
T4709 1352-1362 NN denotes morphology
T4710 1344-1351 JJ denotes general
T4711 1363-1366 CC denotes and
T4712 1367-1379 NN denotes organisation
T4713 1380-1382 IN denotes of
T4714 1383-1392 JJ denotes embryonic
T4715 1393-1403 NNS denotes structures
T4716 1404-1406 IN denotes in
T4717 1407-1415 JJ denotes Atrxnull
T4718 1416-1427 NNS denotes conceptuses
T4719 1437-1444 RB denotes grossly
T4720 1445-1451 JJ denotes normal
T4721 1451-1452 . denotes .
T4722 1452-1632 sentence denotes The amnion and chorion were clearly present and the amniotic, exocoelomic, and ectoplacental cavities were distinguishable, as were all three embryonic germ layers (Figure 5A–5C).
T4723 1453-1456 DT denotes The
T4724 1457-1463 NN denotes amnion
T4725 1476-1480 VBD denotes were
T4726 1464-1467 CC denotes and
T4727 1468-1475 NN denotes chorion
T4728 1481-1488 RB denotes clearly
T4729 1489-1496 JJ denotes present
T4730 1497-1500 CC denotes and
T4731 1501-1504 DT denotes the
T4732 1546-1554 NNS denotes cavities
T4733 1505-1513 JJ denotes amniotic
T4734 1513-1515 , denotes ,
T4735 1515-1526 JJ denotes exocoelomic
T4736 1526-1528 , denotes ,
T4737 1528-1531 CC denotes and
T4738 1532-1545 JJ denotes ectoplacental
T4739 1555-1559 VBD denotes were
T4740 1560-1575 JJ denotes distinguishable
T4741 1575-1577 , denotes ,
T4742 1577-1579 IN denotes as
T4743 1580-1584 VBD denotes were
T4744 1585-1588 DT denotes all
T4745 1610-1616 NNS denotes layers
T4746 1589-1594 CD denotes three
T4747 1595-1604 JJ denotes embryonic
T4748 1605-1609 NN denotes germ
T4749 1617-1618 -LRB- denotes (
T4750 1625-1627 NN denotes 5A
T4751 1618-1624 NN denotes Figure
T4752 1627-1628 SYM denotes –
T4753 1628-1630 NN denotes 5C
T4754 1630-1631 -RRB- denotes )
T4755 1631-1632 . denotes .
T4756 1632-1714 sentence denotes At 8.5 dpc, embryos were dissected free of deciduas, and observed in whole mount.
T4757 1633-1635 IN denotes At
T4758 1658-1667 VBN denotes dissected
T4759 1636-1639 CD denotes 8.5
T4760 1640-1643 NN denotes dpc
T4761 1643-1645 , denotes ,
T4762 1645-1652 NNS denotes embryos
T4763 1653-1657 VBD denotes were
T4764 1668-1672 JJ denotes free
T4765 1673-1675 IN denotes of
T4766 1676-1684 NNS denotes deciduas
T4767 1684-1686 , denotes ,
T4768 1686-1689 CC denotes and
T4769 1690-1698 VBN denotes observed
T4770 1699-1701 IN denotes in
T4771 1702-1707 JJ denotes whole
T4772 1708-1713 NN denotes mount
T4773 1713-1714 . denotes .
T4774 1714-1821 sentence denotes Individual conceptuses were genotyped by PCR using DNA isolated from yolk sac as described in Protocol S1.
T4775 1715-1725 JJ denotes Individual
T4776 1726-1737 NNS denotes conceptuses
T4777 1743-1752 VBN denotes genotyped
T4778 1738-1742 VBD denotes were
T4779 1753-1755 IN denotes by
T4780 1756-1759 NN denotes PCR
T4781 1760-1765 VBG denotes using
T4782 1766-1769 NN denotes DNA
T4783 1770-1778 VBN denotes isolated
T4784 1779-1783 IN denotes from
T4785 1784-1788 NN denotes yolk
T4786 1789-1792 NN denotes sac
T4787 1793-1795 IN denotes as
T4788 1796-1805 VBN denotes described
T4789 1806-1808 IN denotes in
T4790 1809-1817 NN denotes Protocol
T4791 1818-1820 NN denotes S1
T4792 1820-1821 . denotes .
T4793 1821-1971 sentence denotes Consistent with observations at 7.5 dpc, the general morphology of the embryo proper of Atrxnull conceptuses also appeared grossly normal at 8.5 dpc.
T4794 1822-1832 JJ denotes Consistent
T4795 1936-1944 VBD denotes appeared
T4796 1833-1837 IN denotes with
T4797 1838-1850 NNS denotes observations
T4798 1851-1853 IN denotes at
T4799 1854-1857 CD denotes 7.5
T4800 1858-1861 NN denotes dpc
T4801 1861-1863 , denotes ,
T4802 1863-1866 DT denotes the
T4803 1875-1885 NN denotes morphology
T4804 1867-1874 JJ denotes general
T4805 1886-1888 IN denotes of
T4806 1889-1892 DT denotes the
T4807 1893-1899 NN denotes embryo
T4808 1900-1906 JJ denotes proper
T4809 1907-1909 IN denotes of
T4810 1910-1918 JJ denotes Atrxnull
T4811 1919-1930 NNS denotes conceptuses
T4812 1931-1935 RB denotes also
T4813 1945-1952 RB denotes grossly
T4814 1953-1959 JJ denotes normal
T4815 1960-1962 IN denotes at
T4816 1963-1966 CD denotes 8.5
T4817 1967-1970 NN denotes dpc
T4818 1970-1971 . denotes .
T4819 1971-2236 sentence denotes The head fold had clearly formed, and expression of the early mesoderm marker brachyury (T) [16] was detected in the primitive streak and emerging notochord by whole-mount in situ hybridisation (WMISH) (Figure 5F), indicating that Atrxnull embryos had gastrulated.
T4820 1972-1975 DT denotes The
T4821 1981-1985 NN denotes fold
T4822 1976-1980 NN denotes head
T4823 1998-2004 VBN denotes formed
T4824 1986-1989 VBD denotes had
T4825 1990-1997 RB denotes clearly
T4826 2004-2006 , denotes ,
T4827 2006-2009 CC denotes and
T4828 2010-2020 NN denotes expression
T4829 2073-2081 VBN denotes detected
T4830 2021-2023 IN denotes of
T4831 2024-2027 DT denotes the
T4832 2050-2059 NN denotes brachyury
T4833 2028-2033 JJ denotes early
T4834 2034-2042 NN denotes mesoderm
T4835 2043-2049 NN denotes marker
T4836 2060-2061 -LRB- denotes (
T4837 2061-2062 NN denotes T
T4838 2062-2063 -RRB- denotes )
T4839 2064-2065 -LRB- denotes [
T4840 2065-2067 CD denotes 16
T4841 2067-2068 -RRB- denotes ]
T4842 2069-2072 VBD denotes was
T4843 2082-2084 IN denotes in
T4844 2085-2088 DT denotes the
T4845 2099-2105 NN denotes streak
T4846 2089-2098 JJ denotes primitive
T4847 2106-2109 CC denotes and
T4848 2110-2118 VBG denotes emerging
T4849 2119-2128 NN denotes notochord
T4850 2129-2131 IN denotes by
T4851 2132-2137 JJ denotes whole
T4852 2138-2143 NN denotes mount
T4853 2137-2138 HYPH denotes -
T4854 2152-2165 NN denotes hybridisation
T4855 2144-2146 FW denotes in
T4856 2147-2151 FW denotes situ
T4857 2166-2167 -LRB- denotes (
T4858 2167-2172 NN denotes WMISH
T4859 2172-2173 -RRB- denotes )
T4860 2174-2175 -LRB- denotes (
T4861 2182-2184 NN denotes 5F
T4862 2175-2181 NN denotes Figure
T4863 2184-2185 -RRB- denotes )
T4864 2185-2187 , denotes ,
T4865 2187-2197 VBG denotes indicating
T4866 2198-2202 IN denotes that
T4867 2224-2235 VBN denotes gastrulated
T4868 2203-2211 JJ denotes Atrxnull
T4869 2212-2219 NNS denotes embryos
T4870 2220-2223 VBD denotes had
T4871 2235-2236 . denotes .
R2572 T4457 T4458 advcl investigate,dissected
R2573 T4459 T4460 det the,morphology
R2574 T4460 T4457 dobj morphology,investigate
R2575 T4461 T4460 prep of,morphology
R2576 T4462 T4463 amod Atrxnull,embryos
R2577 T4463 T4461 pobj embryos,of
R2578 T4464 T4465 advmod prior,to
R2579 T4465 T4460 prep to,morphology
R2580 T4466 T4465 pobj death,to
R2581 T4467 T4458 punct ", ",dissected
R2582 T4468 T4458 nsubjpass embryos,dissected
R2583 T4469 T4468 prep from,embryos
R2584 T4470 T4471 det the,crosses
R2585 T4471 T4469 pobj crosses,from
R2586 T4472 T4471 amod above,crosses
R2587 T4473 T4458 auxpass were,dissected
R2588 T4474 T4458 advmod initially,dissected
R2589 T4475 T4458 prep in,dissected
R2590 T4476 T4477 poss their,deciduas
R2591 T4477 T4475 pobj deciduas,in
R2592 T4478 T4458 prep at,dissected
R2593 T4479 T4480 nummod 7.5,dpc
R2594 T4480 T4478 pobj dpc,at
R2595 T4481 T4458 punct ", ",dissected
R2596 T4482 T4458 cc and,dissected
R2597 T4483 T4484 compound paraffin,sections
R2598 T4484 T4485 nsubjpass sections,stained
R2599 T4485 T4458 conj stained,dissected
R2600 T4486 T4485 auxpass were,stained
R2601 T4487 T4485 prep with,stained
R2602 T4488 T4487 pobj haematoxylin,with
R2603 T4489 T4490 punct (,5A
R2604 T4490 T4487 parataxis 5A,with
R2605 T4491 T4490 compound Figure,5A
R2606 T4492 T4490 punct ),5A
R2607 T4493 T4487 cc or,with
R2608 T4494 T4487 conj with,with
R2609 T4495 T4496 det an,antibody
R2610 T4496 T4494 pobj antibody,with
R2611 T4497 T4496 amod anti-ATRX,antibody
R2612 T4498 T4499 punct (,5B
R2613 T4499 T4458 parataxis 5B,dissected
R2614 T4500 T4499 compound Figure,5B
R2615 T4501 T4502 punct –,5E
R2616 T4502 T4499 prep 5E,5B
R2617 T4503 T4499 punct ),5B
R2618 T4504 T4458 punct .,dissected
R2619 T4506 T4507 amod Immunohistochemical,staining
R2620 T4507 T4508 nsubj staining,revealed
R2621 T4509 T4510 mark that,expressed
R2622 T4510 T4508 ccomp expressed,revealed
R2623 T4511 T4510 nsubjpass Atrx,expressed
R2624 T4512 T4510 auxpass was,expressed
R2625 T4513 T4510 advmod widely,expressed
R2626 T4514 T4510 prep in,expressed
R2627 T4515 T4516 amod wild,type
R2628 T4516 T4518 nmod type,embryos
R2629 T4517 T4516 punct -,type
R2630 T4518 T4514 pobj embryos,in
R2631 T4519 T4520 nummod 7.5,dpc
R2632 T4520 T4518 compound dpc,embryos
R2633 T4521 T4522 punct (,5B
R2634 T4522 T4508 parataxis 5B,revealed
R2635 T4523 T4522 compound Figure,5B
R2636 T4524 T4522 punct ),5B
R2637 T4525 T4508 punct .,revealed
R2638 T4527 T4528 nsubj Expression,was
R2639 T4529 T4528 acomp highest,was
R2640 T4530 T4528 prep in,was
R2641 T4531 T4532 det the,region
R2642 T4532 T4530 pobj region,in
R2643 T4533 T4532 amod embryonic,region
R2644 T4534 T4535 punct (,5C
R2645 T4535 T4532 parataxis 5C,region
R2646 T4536 T4535 compound Figure,5C
R2647 T4537 T4535 punct ),5C
R2648 T4538 T4532 cc and,region
R2649 T4539 T4540 det the,chorion
R2650 T4540 T4532 conj chorion,region
R2651 T4541 T4542 punct (,5D
R2652 T4542 T4540 parataxis 5D,chorion
R2653 T4543 T4542 compound Figure,5D
R2654 T4544 T4542 punct ),5D
R2655 T4545 T4528 punct .,was
R2656 T4547 T4548 amod Detectable,levels
R2657 T4548 T4551 nsubjpass levels,observed
R2658 T4549 T4547 cc but,Detectable
R2659 T4550 T4547 conj lower,Detectable
R2660 T4552 T4548 prep of,levels
R2661 T4553 T4552 pobj expression,of
R2662 T4554 T4551 auxpass were,observed
R2663 T4555 T4551 prep in,observed
R2664 T4556 T4557 det the,cone
R2665 T4557 T4555 pobj cone,in
R2666 T4558 T4557 amod ectoplacental,cone
R2667 T4559 T4560 punct (,5D
R2668 T4560 T4557 parataxis 5D,cone
R2669 T4561 T4560 compound Figure,5D
R2670 T4562 T4560 punct ),5D
R2671 T4563 T4557 cc and,cone
R2672 T4564 T4565 amod surrounding,tissue
R2673 T4565 T4557 conj tissue,cone
R2674 T4566 T4565 amod decidual,tissue
R2675 T4567 T4551 punct .,observed
R2676 T4569 T4570 nsubj We,observed
R2677 T4571 T4570 advmod also,observed
R2678 T4572 T4573 advmod very,high
R2679 T4573 T4574 amod high,levels
R2680 T4574 T4570 dobj levels,observed
R2681 T4575 T4574 prep of,levels
R2682 T4576 T4577 compound Atrx,expression
R2683 T4577 T4575 pobj expression,of
R2684 T4578 T4570 prep in,observed
R2685 T4579 T4580 nmod trophoblast,cells
R2686 T4580 T4578 pobj cells,in
R2687 T4581 T4580 amod giant,cells
R2688 T4582 T4580 punct (,cells
R2689 T4583 T4580 appos TGCs,cells
R2690 T4584 T4580 punct ),cells
R2691 T4585 T4580 acl surrounding,cells
R2692 T4586 T4587 det the,membrane
R2693 T4587 T4585 dobj membrane,surrounding
R2694 T4588 T4587 poss Reichert,membrane
R2695 T4589 T4588 case 's,Reichert
R2696 T4590 T4591 punct (,5E
R2697 T4591 T4570 parataxis 5E,observed
R2698 T4592 T4591 compound Figure,5E
R2699 T4593 T4591 punct ),5E
R2700 T4594 T4570 punct .,observed
R2701 T4596 T4597 prep Within,was
R2702 T4598 T4599 det the,nuclei
R2703 T4599 T4596 pobj nuclei,Within
R2704 T4600 T4599 amod large,nuclei
R2705 T4601 T4599 prep of,nuclei
R2706 T4602 T4603 det these,TGCs
R2707 T4603 T4601 pobj TGCs,of
R2708 T4604 T4597 punct ", ",was
R2709 T4605 T4606 det the,association
R2710 T4606 T4597 nsubj association,was
R2711 T4607 T4606 amod typical,association
R2712 T4608 T4606 amod nuclear,association
R2713 T4609 T4606 prep of,association
R2714 T4610 T4609 pobj Atrx,of
R2715 T4611 T4606 prep with,association
R2716 T4612 T4611 pobj blocks,with
R2717 T4613 T4612 prep of,blocks
R2718 T4614 T4615 amod pericentromeric,heterochromatin
R2719 T4615 T4613 pobj heterochromatin,of
R2720 T4616 T4617 punct [,15
R2721 T4617 T4606 parataxis 15,association
R2722 T4618 T4617 punct ],15
R2723 T4619 T4620 advmod clearly,observable
R2724 T4620 T4597 acomp observable,was
R2725 T4621 T4597 punct .,was
R2726 T4623 T4624 advmod Only,staining
R2727 T4624 T4626 nsubjpass staining,seen
R2728 T4625 T4624 compound background,staining
R2729 T4627 T4626 auxpass was,seen
R2730 T4628 T4626 prep in,seen
R2731 T4629 T4630 det the,tissues
R2732 T4630 T4628 pobj tissues,in
R2733 T4631 T4630 amod corresponding,tissues
R2734 T4632 T4630 amod Atrxnull,tissues
R2735 T4633 T4630 amod embryonic,tissues
R2736 T4634 T4635 punct (,5B
R2737 T4635 T4626 parataxis 5B,seen
R2738 T4636 T4635 compound Figure,5B
R2739 T4637 T4638 punct –,5D
R2740 T4638 T4635 prep 5D,5B
R2741 T4639 T4635 punct ),5B
R2742 T4640 T4626 punct ", ",seen
R2743 T4641 T4642 mark while,was
R2744 T4642 T4626 advcl was,seen
R2745 T4643 T4642 nsubj expression,was
R2746 T4644 T4643 prep in,expression
R2747 T4645 T4646 det the,tissue
R2748 T4646 T4644 pobj tissue,in
R2749 T4647 T4646 amod surrounding,tissue
R2750 T4648 T4646 amod decidual,tissue
R2751 T4649 T4646 punct (,tissue
R2752 T4650 T4646 prep of,tissue
R2753 T4651 T4652 amod maternal,origin
R2754 T4652 T4650 pobj origin,of
R2755 T4653 T4646 punct ),tissue
R2756 T4654 T4642 acomp normal,was
R2757 T4655 T4642 cc and,was
R2758 T4656 T4642 conj served,was
R2759 T4657 T4656 prep as,served
R2760 T4658 T4659 det an,control
R2761 T4659 T4657 pobj control,as
R2762 T4660 T4659 compound antibody,control
R2763 T4661 T4659 compound staining,control
R2764 T4662 T4663 punct (,data
R2765 T4663 T4656 meta data,served
R2766 T4664 T4663 amod unpublished,data
R2767 T4665 T4663 punct ),data
R2768 T4666 T4626 punct .,seen
R2769 T4668 T4669 advmod Morphologically,reduced
R2770 T4670 T4669 punct ", ",reduced
R2771 T4671 T4672 nummod 7.5,dpc
R2772 T4672 T4673 nmod dpc,embryos
R2773 T4673 T4669 nsubjpass embryos,reduced
R2774 T4674 T4673 amod Atrxnull,embryos
R2775 T4675 T4669 auxpass were,reduced
R2776 T4676 T4669 advmod dramatically,reduced
R2777 T4677 T4669 prep in,reduced
R2778 T4678 T4677 pobj size,in
R2779 T4679 T4669 cc and,reduced
R2780 T4680 T4669 conj appeared,reduced
R2781 T4681 T4682 advmod developmentally,retarded
R2782 T4682 T4680 oprd retarded,appeared
R2783 T4683 T4680 advcl relative,appeared
R2784 T4684 T4683 prep to,relative
R2785 T4685 T4686 npadvmod stage,matched
R2786 T4686 T4688 amod matched,embryos
R2787 T4687 T4686 punct -,matched
R2788 T4688 T4684 pobj embryos,to
R2789 T4689 T4690 amod wild,type
R2790 T4690 T4688 compound type,embryos
R2791 T4691 T4690 punct -,type
R2792 T4692 T4693 punct (,5A
R2793 T4693 T4680 parataxis 5A,appeared
R2794 T4694 T4693 compound Figure,5A
R2795 T4695 T4693 cc and,5A
R2796 T4696 T4693 conj 5B,5A
R2797 T4697 T4693 punct ),5A
R2798 T4698 T4669 punct .,reduced
R2799 T4700 T4701 advmod However,appeared
R2800 T4702 T4701 punct ", ",appeared
R2801 T4703 T4701 prep despite,appeared
R2802 T4704 T4705 poss their,size
R2803 T4705 T4703 pobj size,despite
R2804 T4706 T4705 amod reduced,size
R2805 T4707 T4701 punct ", ",appeared
R2806 T4708 T4709 det the,morphology
R2807 T4709 T4701 nsubj morphology,appeared
R2808 T4710 T4709 amod general,morphology
R2809 T4711 T4709 cc and,morphology
R2810 T4712 T4709 conj organisation,morphology
R2811 T4713 T4709 prep of,morphology
R2812 T4714 T4715 amod embryonic,structures
R2813 T4715 T4713 pobj structures,of
R2814 T4716 T4709 prep in,morphology
R2815 T4717 T4718 amod Atrxnull,conceptuses
R2816 T4718 T4716 pobj conceptuses,in
R2817 T4719 T4720 advmod grossly,normal
R2818 T4720 T4701 oprd normal,appeared
R2819 T4721 T4701 punct .,appeared
R2820 T4723 T4724 det The,amnion
R2821 T4724 T4725 nsubj amnion,were
R2822 T4726 T4724 cc and,amnion
R2823 T4727 T4724 conj chorion,amnion
R2824 T4728 T4729 advmod clearly,present
R2825 T4729 T4725 acomp present,were
R2826 T4730 T4725 cc and,were
R2827 T4731 T4732 det the,cavities
R2828 T4732 T4739 nsubj cavities,were
R2829 T4733 T4732 amod amniotic,cavities
R2830 T4734 T4733 punct ", ",amniotic
R2831 T4735 T4733 conj exocoelomic,amniotic
R2832 T4736 T4735 punct ", ",exocoelomic
R2833 T4737 T4735 cc and,exocoelomic
R2834 T4738 T4735 conj ectoplacental,exocoelomic
R2835 T4739 T4725 conj were,were
R2836 T4740 T4739 acomp distinguishable,were
R2837 T4741 T4739 punct ", ",were
R2838 T4742 T4743 mark as,were
R2839 T4743 T4739 advcl were,were
R2840 T4744 T4745 det all,layers
R2841 T4745 T4743 nsubj layers,were
R2842 T4746 T4745 nummod three,layers
R2843 T4747 T4745 amod embryonic,layers
R2844 T4748 T4745 compound germ,layers
R2845 T4749 T4750 punct (,5A
R2846 T4750 T4739 parataxis 5A,were
R2847 T4751 T4750 compound Figure,5A
R2848 T4752 T4753 punct –,5C
R2849 T4753 T4750 prep 5C,5A
R2850 T4754 T4750 punct ),5A
R2851 T4755 T4739 punct .,were
R2852 T4757 T4758 prep At,dissected
R2853 T4759 T4760 nummod 8.5,dpc
R2854 T4760 T4757 pobj dpc,At
R2855 T4761 T4758 punct ", ",dissected
R2856 T4762 T4758 nsubjpass embryos,dissected
R2857 T4763 T4758 auxpass were,dissected
R2858 T4764 T4758 advcl free,dissected
R2859 T4765 T4764 prep of,free
R2860 T4766 T4765 pobj deciduas,of
R2861 T4767 T4758 punct ", ",dissected
R2862 T4768 T4758 cc and,dissected
R2863 T4769 T4758 conj observed,dissected
R2864 T4770 T4769 prep in,observed
R2865 T4771 T4772 amod whole,mount
R2866 T4772 T4770 pobj mount,in
R2867 T4773 T4758 punct .,dissected
R2868 T4775 T4776 amod Individual,conceptuses
R2869 T4776 T4777 nsubjpass conceptuses,genotyped
R2870 T4778 T4777 auxpass were,genotyped
R2871 T4779 T4777 prep by,genotyped
R2872 T4780 T4779 pobj PCR,by
R2873 T4781 T4777 advcl using,genotyped
R2874 T4782 T4781 dobj DNA,using
R2875 T4783 T4782 acl isolated,DNA
R2876 T4784 T4783 prep from,isolated
R2877 T4785 T4786 compound yolk,sac
R2878 T4786 T4784 pobj sac,from
R2879 T4787 T4788 mark as,described
R2880 T4788 T4777 advcl described,genotyped
R2881 T4789 T4788 prep in,described
R2882 T4790 T4791 compound Protocol,S1
R2883 T4791 T4789 pobj S1,in
R2884 T4792 T4777 punct .,genotyped
R2885 T4794 T4795 advcl Consistent,appeared
R2886 T4796 T4794 prep with,Consistent
R2887 T4797 T4796 pobj observations,with
R2888 T4798 T4797 prep at,observations
R2889 T4799 T4800 nummod 7.5,dpc
R2890 T4800 T4798 pobj dpc,at
R2891 T4801 T4795 punct ", ",appeared
R2892 T4802 T4803 det the,morphology
R2893 T4803 T4795 nsubj morphology,appeared
R2894 T4804 T4803 amod general,morphology
R2895 T4805 T4803 prep of,morphology
R2896 T4806 T4807 det the,embryo
R2897 T4807 T4805 pobj embryo,of
R2898 T4808 T4807 amod proper,embryo
R2899 T4809 T4807 prep of,embryo
R2900 T4810 T4811 amod Atrxnull,conceptuses
R2901 T4811 T4809 pobj conceptuses,of
R2902 T4812 T4795 advmod also,appeared
R2903 T4813 T4814 advmod grossly,normal
R2904 T4814 T4795 oprd normal,appeared
R2905 T4815 T4795 prep at,appeared
R2906 T4816 T4817 nummod 8.5,dpc
R2907 T4817 T4815 pobj dpc,at
R2908 T4818 T4795 punct .,appeared
R2909 T4820 T4821 det The,fold
R2910 T4821 T4823 nsubj fold,formed
R2911 T4822 T4821 compound head,fold
R2912 T4824 T4823 aux had,formed
R2913 T4825 T4823 advmod clearly,formed
R2914 T4826 T4823 punct ", ",formed
R2915 T4827 T4823 cc and,formed
R2916 T4828 T4829 nsubjpass expression,detected
R2917 T4829 T4823 conj detected,formed
R2918 T4830 T4828 prep of,expression
R2919 T4831 T4832 det the,brachyury
R2920 T4832 T4830 pobj brachyury,of
R2921 T4833 T4832 amod early,brachyury
R2922 T4834 T4832 compound mesoderm,brachyury
R2923 T4835 T4832 compound marker,brachyury
R2924 T4836 T4837 punct (,T
R2925 T4837 T4832 appos T,brachyury
R2926 T4838 T4828 punct ),expression
R2927 T4839 T4840 punct [,16
R2928 T4840 T4828 parataxis 16,expression
R2929 T4841 T4840 punct ],16
R2930 T4842 T4829 auxpass was,detected
R2931 T4843 T4829 prep in,detected
R2932 T4844 T4845 det the,streak
R2933 T4845 T4843 pobj streak,in
R2934 T4846 T4845 amod primitive,streak
R2935 T4847 T4845 cc and,streak
R2936 T4848 T4849 amod emerging,notochord
R2937 T4849 T4845 conj notochord,streak
R2938 T4850 T4829 prep by,detected
R2939 T4851 T4852 amod whole,mount
R2940 T4852 T4854 nmod mount,hybridisation
R2941 T4853 T4852 punct -,mount
R2942 T4854 T4850 pobj hybridisation,by
R2943 T4855 T4856 advmod in,situ
R2944 T4856 T4854 amod situ,hybridisation
R2945 T4857 T4854 punct (,hybridisation
R2946 T4858 T4854 appos WMISH,hybridisation
R2947 T4859 T4829 punct ),detected
R2948 T4860 T4861 punct (,5F
R2949 T4861 T4829 parataxis 5F,detected
R2950 T4862 T4861 compound Figure,5F
R2951 T4863 T4861 punct ),5F
R2952 T4864 T4829 punct ", ",detected
R2953 T4865 T4829 advcl indicating,detected
R2954 T4866 T4867 mark that,gastrulated
R2955 T4867 T4865 ccomp gastrulated,indicating
R2956 T4868 T4869 amod Atrxnull,embryos
R2957 T4869 T4867 nsubj embryos,gastrulated
R2958 T4870 T4867 aux had,gastrulated
R2959 T4871 T4829 punct .,detected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3868 1784-1792 UBERON:0001040 denotes yolk sac
T3869 1893-1899 UBERON:0000922 denotes embryo
T3807 33-37 PR_EXT:000004503 denotes Atrx
T3808 37-41 SO_EXT:sequence_nullness denotes null
T3809 42-49 UBERON:0000922 denotes embryos
T3810 59-64 GO:0016265 denotes death
T3811 66-73 UBERON:0000922 denotes embryos
T3812 131-139 UBERON:0002450 denotes deciduas
T3813 192-204 CHEBI:51686 denotes haematoxylin
T3814 233-237 PR_EXT:000004503 denotes ATRX
T3815 238-246 GO:0042571 denotes antibody
T3816 306-310 PR_EXT:000004503 denotes Atrx
T3817 322-331 GO:0010467 denotes expressed
T3818 335-344 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3819 353-360 UBERON:0000922 denotes embryos
T3820 374-384 GO:0010467 denotes Expression
T3821 404-413 UBERON:0000922 denotes embryonic
T3822 441-448 UBERON:0003124 denotes chorion
T3823 493-503 GO:0010467 denotes expression
T3824 525-543 UBERON:0004364 denotes ectoplacental cone
T3825 572-580 UBERON:0002450 denotes decidual
T3826 581-587 UBERON:0000479 denotes tissue
T3827 626-630 PR_EXT:000004503 denotes Atrx
T3828 631-641 GO:0010467 denotes expression
T3829 645-656 UBERON:0000088 denotes trophoblast
T3830 645-668 CL:0002488 denotes trophoblast giant cells
T3831 663-668 CL_GO_EXT:cell denotes cells
T3832 670-674 CL:0002488 denotes TGCs
T3833 692-711 UBERON:0004369 denotes Reichert's membrane
T3834 742-748 GO:0005634 denotes nuclei
T3835 758-762 CL:0002488 denotes TGCs
T3836 776-783 GO:0005634 denotes nuclear
T3837 799-803 PR_EXT:000004503 denotes Atrx
T3838 819-850 GO:0005721 denotes pericentromeric heterochromatin
T3839 823-834 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centromeric
T3840 939-943 SO_EXT:sequence_nullness denotes null
T3841 944-961 UBERON:0005291 denotes embryonic tissues
T3842 984-994 GO:0010467 denotes expression
T3843 1014-1022 UBERON:0002450 denotes decidual
T3844 1023-1029 UBERON:0000479 denotes tissue
T3845 1079-1087 GO:0042571 denotes antibody
T3846 1150-1154 PR_EXT:000004503 denotes Atrx
T3847 1154-1158 SO_EXT:sequence_nullness denotes null
T3848 1159-1166 UBERON:0000922 denotes embryos
T3849 1265-1274 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3850 1275-1282 UBERON:0000922 denotes embryos
T3851 1383-1403 UBERON:0002050 denotes embryonic structures
T3852 1407-1411 PR_EXT:000004503 denotes Atrx
T3853 1411-1415 SO_EXT:sequence_nullness denotes null
T3854 1416-1427 UBERON:0004716 denotes conceptuses
T3855 1457-1463 UBERON:0000305 denotes amnion
T3856 1468-1475 UBERON:0003124 denotes chorion
T3857 1505-1513 _FRAGMENT denotes amniotic
T3858 1546-1554 UBERON:0000301 denotes cavities
T3859 1515-1526 _FRAGMENT denotes exocoelomic
T3860 1546-1554 UBERON:0003888 denotes cavities
T3861 1532-1554 UBERON:0008851 denotes ectoplacental cavities
T3862 1595-1604 UBERON:0000922 denotes embryonic
T3863 1605-1616 UBERON:0000923 denotes germ layers
T3864 1645-1652 UBERON:0000922 denotes embryos
T3865 1676-1684 UBERON:0002450 denotes deciduas
T3866 1726-1737 UBERON:0004716 denotes conceptuses
T3867 1766-1769 CHEBI_SO_EXT:DNA denotes DNA
T3870 1914-1918 SO_EXT:sequence_nullness denotes null
T3871 1919-1930 UBERON:0004716 denotes conceptuses
T3872 1976-1985 UBERON:0009746 denotes head fold
T3873 2010-2020 GO:0010467 denotes expression
T3874 2034-2042 UBERON:0000926 denotes mesoderm
T3875 2043-2049 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T3876 2050-2059 PR_EXT:000016001 denotes brachyury
T3877 2061-2062 PR_EXT:000016001 denotes T
T3878 2089-2105 UBERON:0004341 denotes primitive streak
T3879 2119-2128 UBERON:0002328 denotes notochord
T3880 2152-2165 GO:0097617 denotes hybridisation
T3881 2203-2207 PR_EXT:000004503 denotes Atrx
T3882 2207-2211 SO_EXT:sequence_nullness denotes null
T3883 2212-2219 UBERON:0000922 denotes embryos
T3884 2224-2235 GO:0007369 denotes gastrulated
R2103 T3858 T3857 _lexicallyChainedTo cavities,amniotic
R2104 T3860 T3859 _lexicallyChainedTo cavities,exocoelomic

2_test

Id Subject Object Predicate Lexical cue
16628246-10570185-85799753 852-854 10570185 denotes 15
16628246-1689462-85799754 2065-2067 1689462 denotes 16
T21579 852-854 10570185 denotes 15
T10275 2065-2067 1689462 denotes 16

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3570 33-37 PR:000004503 denotes Atrx
T3571 42-49 UBERON:0000922 denotes embryos
T3572 59-64 GO:0016265 denotes death
T3573 66-73 UBERON:0000922 denotes embryos
T3574 131-139 UBERON:0002450 denotes deciduas
T3575 192-204 CHEBI:51686 denotes haematoxylin
T3576 233-237 PR:000004503 denotes ATRX
T3577 238-246 GO:0042571 denotes antibody
T3578 306-310 PR:000004503 denotes Atrx
T3579 322-331 GO:0010467 denotes expressed
T3580 353-360 UBERON:0000922 denotes embryos
T3581 374-384 GO:0010467 denotes Expression
T3582 404-413 UBERON:0000922 denotes embryonic
T3583 441-448 UBERON:0003124 denotes chorion
T3584 493-503 GO:0010467 denotes expression
T3585 525-543 UBERON:0004364 denotes ectoplacental cone
T3586 572-580 UBERON:0002450 denotes decidual
T3587 581-587 UBERON:0000479 denotes tissue
T3588 626-630 PR:000004503 denotes Atrx
T3589 631-641 GO:0010467 denotes expression
T3590 645-656 UBERON:0000088 denotes trophoblast
T3591 645-668 CL:0002488 denotes trophoblast giant cells
T3592 670-674 CL:0002488 denotes TGCs
T3593 692-711 UBERON:0004369 denotes Reichert's membrane
T3594 742-748 GO:0005634 denotes nuclei
T3595 758-762 CL:0002488 denotes TGCs
T3596 776-783 GO:0005634 denotes nuclear
T3597 799-803 PR:000004503 denotes Atrx
T3598 819-850 GO:0005721 denotes pericentromeric heterochromatin
T3599 944-961 UBERON:0005291 denotes embryonic tissues
T3600 984-994 GO:0010467 denotes expression
T3601 1014-1022 UBERON:0002450 denotes decidual
T3602 1023-1029 UBERON:0000479 denotes tissue
T3603 1079-1087 GO:0042571 denotes antibody
T3604 1150-1154 PR:000004503 denotes Atrx
T3605 1159-1166 UBERON:0000922 denotes embryos
T3606 1275-1282 UBERON:0000922 denotes embryos
T3607 1383-1403 UBERON:0002050 denotes embryonic structures
T3608 1407-1411 PR:000004503 denotes Atrx
T3609 1416-1427 UBERON:0004716 denotes conceptuses
T3610 1457-1463 UBERON:0000305 denotes amnion
T3611 1468-1475 UBERON:0003124 denotes chorion
T3612 1505-1513 _FRAGMENT denotes amniotic
T3613 1546-1554 UBERON:0000301 denotes cavities
T3614 1515-1526 _FRAGMENT denotes exocoelomic
T3615 1546-1554 UBERON:0003888 denotes cavities
T3616 1532-1554 UBERON:0008851 denotes ectoplacental cavities
T3617 1595-1604 UBERON:0000922 denotes embryonic
T3618 1605-1616 UBERON:0000923 denotes germ layers
T3619 1645-1652 UBERON:0000922 denotes embryos
T3620 1676-1684 UBERON:0002450 denotes deciduas
T3621 1726-1737 UBERON:0004716 denotes conceptuses
T3622 1784-1792 UBERON:0001040 denotes yolk sac
T3623 1893-1899 UBERON:0000922 denotes embryo
T3624 1919-1930 UBERON:0004716 denotes conceptuses
T3625 1976-1985 UBERON:0009746 denotes head fold
T3626 2010-2020 GO:0010467 denotes expression
T3627 2034-2042 UBERON:0000926 denotes mesoderm
T3628 2050-2059 PR:000016001 denotes brachyury
T3629 2061-2062 PR:000016001 denotes T
T3630 2089-2105 UBERON:0004341 denotes primitive streak
T3631 2119-2128 UBERON:0002328 denotes notochord
T3632 2152-2165 GO:0097617 denotes hybridisation
T3633 2203-2207 PR:000004503 denotes Atrx
T3634 2212-2219 UBERON:0000922 denotes embryos
T3635 2224-2235 GO:0007369 denotes gastrulated
R2099 T3613 T3612 _lexicallyChainedTo cavities,amniotic
R2100 T3615 T3614 _lexicallyChainedTo cavities,exocoelomic