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PMC:1440874 / 16446-16757 JSONTXT

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Id Subject Object Predicate Lexical cue
T3119 0-311 sentence denotes Using methylation-sensitive restriction enzymes, we also observed significant hypomethylation at several sites tested within the mouse rDNA repeats in Atrxnull ES cells and 12-d embryoid bodies relative to ES cells and embryoid bodies bearing a functional Atrx allele (Atrx WT or Atrx flox) (Figure 3B and 3C).
T3120 1-6 VBG denotes Using
T3121 58-66 VBD denotes observed
T3122 7-18 NN denotes methylation
T3123 19-28 JJ denotes sensitive
T3124 18-19 HYPH denotes -
T3125 41-48 NNS denotes enzymes
T3126 29-40 NN denotes restriction
T3127 48-50 , denotes ,
T3128 50-52 PRP denotes we
T3129 53-57 RB denotes also
T3130 67-78 JJ denotes significant
T3131 79-94 NN denotes hypomethylation
T3132 95-97 IN denotes at
T3133 98-105 JJ denotes several
T3134 106-111 NNS denotes sites
T3135 112-118 VBN denotes tested
T3136 119-125 IN denotes within
T3137 126-129 DT denotes the
T3138 141-148 NNS denotes repeats
T3139 130-135 NN denotes mouse
T3140 136-140 NN denotes rDNA
T3141 149-151 IN denotes in
T3142 152-160 JJ denotes Atrxnull
T3143 164-169 NNS denotes cells
T3144 161-163 NN denotes ES
T3145 170-173 CC denotes and
T3146 174-176 CD denotes 12
T3147 177-178 NN denotes d
T3148 176-177 HYPH denotes -
T3149 188-194 NNS denotes bodies
T3150 179-187 JJ denotes embryoid
T3151 195-203 JJ denotes relative
T3152 204-206 IN denotes to
T3153 207-209 NN denotes ES
T3154 210-215 NNS denotes cells
T3155 216-219 CC denotes and
T3156 220-228 JJ denotes embryoid
T3157 229-235 NNS denotes bodies
T3158 236-243 VBG denotes bearing
T3159 244-245 DT denotes a
T3160 262-268 NN denotes allele
T3161 246-256 JJ denotes functional
T3162 257-261 NN denotes Atrx
T3163 269-270 -LRB- denotes (
T3164 270-277 NN denotes Atrx WT
T3165 278-280 CC denotes or
T3166 281-290 NN denotes Atrx flox
T3167 290-291 -RRB- denotes )
T3168 292-293 -LRB- denotes (
T3169 300-302 NN denotes 3B
T3170 293-299 NN denotes Figure
T3171 303-306 CC denotes and
T3172 307-309 NN denotes 3C
T3173 309-310 -RRB- denotes )
T3174 310-311 . denotes .
R1865 T3120 T3121 advcl Using,observed
R1866 T3122 T3123 npadvmod methylation,sensitive
R1867 T3123 T3125 amod sensitive,enzymes
R1868 T3124 T3123 punct -,sensitive
R1869 T3125 T3120 dobj enzymes,Using
R1870 T3126 T3125 compound restriction,enzymes
R1871 T3127 T3121 punct ", ",observed
R1872 T3128 T3121 nsubj we,observed
R1873 T3129 T3121 advmod also,observed
R1874 T3130 T3131 amod significant,hypomethylation
R1875 T3131 T3121 dobj hypomethylation,observed
R1876 T3132 T3121 prep at,observed
R1877 T3133 T3134 amod several,sites
R1878 T3134 T3132 pobj sites,at
R1879 T3135 T3134 acl tested,sites
R1880 T3136 T3135 prep within,tested
R1881 T3137 T3138 det the,repeats
R1882 T3138 T3136 pobj repeats,within
R1883 T3139 T3140 compound mouse,rDNA
R1884 T3140 T3138 compound rDNA,repeats
R1885 T3141 T3138 prep in,repeats
R1886 T3142 T3143 amod Atrxnull,cells
R1887 T3143 T3141 pobj cells,in
R1888 T3144 T3143 compound ES,cells
R1889 T3145 T3143 cc and,cells
R1890 T3146 T3147 nummod 12,d
R1891 T3147 T3149 nmod d,bodies
R1892 T3148 T3147 punct -,d
R1893 T3149 T3143 conj bodies,cells
R1894 T3150 T3149 amod embryoid,bodies
R1895 T3151 T3121 advcl relative,observed
R1896 T3152 T3151 prep to,relative
R1897 T3153 T3154 compound ES,cells
R1898 T3154 T3152 pobj cells,to
R1899 T3155 T3154 cc and,cells
R1900 T3156 T3157 amod embryoid,bodies
R1901 T3157 T3154 conj bodies,cells
R1902 T3158 T3154 acl bearing,cells
R1903 T3159 T3160 det a,allele
R1904 T3160 T3158 dobj allele,bearing
R1905 T3161 T3160 amod functional,allele
R1906 T3162 T3160 compound Atrx,allele
R1907 T3163 T3160 punct (,allele
R1908 T3164 T3160 appos Atrx WT,allele
R1909 T3165 T3164 cc or,Atrx WT
R1910 T3166 T3164 conj Atrx flox,Atrx WT
R1911 T3167 T3121 punct ),observed
R1912 T3168 T3169 punct (,3B
R1913 T3169 T3121 parataxis 3B,observed
R1914 T3170 T3169 compound Figure,3B
R1915 T3171 T3169 cc and,3B
R1916 T3172 T3169 conj 3C,3B
R1917 T3173 T3169 punct ),3B
R1918 T3174 T3121 punct .,observed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2477 7-18 GO_MOP_EXT:methylation denotes methylation
T2478 29-48 GO_EXT:0015666 denotes restriction enzymes
T2479 41-48 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T2480 83-94 GO_MOP_EXT:methylation denotes methylation
T2481 130-135 NCBITaxon:10088 denotes mouse
T2482 141-148 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T2483 152-156 PR_EXT:000004503 denotes Atrx
T2484 156-160 SO_EXT:sequence_nullness denotes null
T2485 161-169 CL:0002322 denotes ES cells
T2486 164-169 CL_GO_EXT:cell denotes cells
T2487 179-194 UBERON:0014374 denotes embryoid bodies
T2488 207-215 CL:0002322 denotes ES cells
T2489 210-215 CL_GO_EXT:cell denotes cells
T2490 220-235 UBERON:0014374 denotes embryoid bodies
T2491 257-261 PR_EXT:000004503 denotes Atrx
T2492 262-268 SO_EXT:0001023 denotes allele
T2493 270-274 PR_EXT:000004503 denotes Atrx
T2494 275-277 SO_EXT:wild_type_entity_or_quality denotes WT
T2495 281-285 PR_EXT:000004503 denotes Atrx
T2496 286-290 SO:0000359 denotes flox

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2297 130-135 NCBITaxon:10088 denotes mouse
T2298 152-156 PR:000004503 denotes Atrx
T2299 161-169 CL:0002322 denotes ES cells
T2300 179-194 UBERON:0014374 denotes embryoid bodies
T2301 207-215 CL:0002322 denotes ES cells
T2302 220-235 UBERON:0014374 denotes embryoid bodies
T2303 257-261 PR:000004503 denotes Atrx
T2304 262-268 SO:0001023 denotes allele
T2305 270-274 PR:000004503 denotes Atrx
T2306 281-285 PR:000004503 denotes Atrx
T2307 286-290 SO:0000359 denotes flox