> top > docs > PMC:1440874 > spans > 14568-16088 > annotations

PMC:1440874 / 14568-16088 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2767 0-2 TO denotes To
T2768 3-14 VB denotes investigate
T2769 71-79 VBD denotes analysed
T2770 15-16 DT denotes a
T2771 37-43 NN denotes defect
T2772 17-25 JJ denotes possible
T2773 26-30 NN denotes cell
T2774 31-36 NN denotes cycle
T2775 30-31 HYPH denotes -
T2776 44-46 IN denotes in
T2777 47-50 DT denotes the
T2778 51-58 NN denotes absence
T2779 59-61 IN denotes of
T2780 62-66 NN denotes Atrx
T2781 66-68 , denotes ,
T2782 68-70 PRP denotes we
T2783 80-83 DT denotes the
T2784 95-107 NN denotes distribution
T2785 84-88 NN denotes cell
T2786 89-94 NN denotes cycle
T2787 108-110 IN denotes of
T2788 111-128 NN denotes bromodeoxyuridine
T2789 136-142 VBN denotes pulsed
T2790 129-130 -LRB- denotes (
T2791 130-134 NN denotes BrdU
T2792 134-135 -RRB- denotes )
T2793 135-136 HYPH denotes -
T2794 146-151 NNS denotes cells
T2795 143-145 NN denotes ES
T2796 152-154 IN denotes by
T2797 155-159 NN denotes flow
T2798 160-169 NN denotes cytometry
T2799 170-171 -LRB- denotes (
T2800 178-181 NN denotes S1A
T2801 171-177 NN denotes Figure
T2802 181-182 -RRB- denotes )
T2803 182-183 . denotes .
T2804 183-355 sentence denotes Surprisingly, both Atrxnull ES cell clones exhibited a cell cycle profile that was indistinguishable from ES cells bearing a functional Atrx allele (Atrx WT or Atrx flox).
T2805 184-196 RB denotes Surprisingly
T2806 227-236 VBD denotes exhibited
T2807 196-198 , denotes ,
T2808 198-202 DT denotes both
T2809 220-226 NNS denotes clones
T2810 203-211 JJ denotes Atrxnull
T2811 215-219 NN denotes cell
T2812 212-214 NN denotes ES
T2813 237-238 DT denotes a
T2814 250-257 NN denotes profile
T2815 239-243 NN denotes cell
T2816 244-249 NN denotes cycle
T2817 258-262 WDT denotes that
T2818 263-266 VBD denotes was
T2819 267-284 JJ denotes indistinguishable
T2820 285-289 IN denotes from
T2821 290-292 NN denotes ES
T2822 293-298 NNS denotes cells
T2823 299-306 VBG denotes bearing
T2824 307-308 DT denotes a
T2825 325-331 NN denotes allele
T2826 309-319 JJ denotes functional
T2827 320-324 NN denotes Atrx
T2828 332-333 -LRB- denotes (
T2829 333-340 NN denotes Atrx WT
T2830 341-343 CC denotes or
T2831 344-353 NN denotes Atrx flox
T2832 353-354 -RRB- denotes )
T2833 354-355 . denotes .
T2834 355-558 sentence denotes We also specifically quantitated the mitotic index within each population by flow cytometry after staining ES cells for phosphorylated (Ser10) histone H3, a specific marker of mitosis (Figure S1B) [13].
T2835 356-358 PRP denotes We
T2836 377-388 VBD denotes quantitated
T2837 359-363 RB denotes also
T2838 364-376 RB denotes specifically
T2839 389-392 DT denotes the
T2840 401-406 NN denotes index
T2841 393-400 JJ denotes mitotic
T2842 407-413 IN denotes within
T2843 414-418 DT denotes each
T2844 419-429 NN denotes population
T2845 430-432 IN denotes by
T2846 433-437 NN denotes flow
T2847 438-447 NN denotes cytometry
T2848 448-453 IN denotes after
T2849 454-462 VBG denotes staining
T2850 463-465 NN denotes ES
T2851 466-471 NNS denotes cells
T2852 472-475 IN denotes for
T2853 476-490 VBN denotes phosphorylated
T2854 507-509 NN denotes H3
T2855 491-492 -LRB- denotes (
T2856 492-497 NN denotes Ser10
T2857 497-498 -RRB- denotes )
T2858 499-506 NN denotes histone
T2859 509-511 , denotes ,
T2860 511-512 DT denotes a
T2861 522-528 NN denotes marker
T2862 513-521 JJ denotes specific
T2863 529-531 IN denotes of
T2864 532-539 NN denotes mitosis
T2865 540-541 -LRB- denotes (
T2866 548-551 NN denotes S1B
T2867 541-547 NN denotes Figure
T2868 551-552 -RRB- denotes )
T2869 553-554 -LRB- denotes [
T2870 554-556 CD denotes 13
T2871 556-557 -RRB- denotes ]
T2872 557-558 . denotes .
T2873 558-735 sentence denotes Consistent with the normal cell-cycle profile observed above, there was no depletion in the size of the mitotic population in the Atrxnull ES clones, despite their slow growth.
T2874 559-569 JJ denotes Consistent
T2875 627-630 VBD denotes was
T2876 570-574 IN denotes with
T2877 575-578 DT denotes the
T2878 597-604 NN denotes profile
T2879 579-585 JJ denotes normal
T2880 586-590 NN denotes cell
T2881 591-596 NN denotes cycle
T2882 590-591 HYPH denotes -
T2883 605-613 VBN denotes observed
T2884 614-619 RB denotes above
T2885 619-621 , denotes ,
T2886 621-626 EX denotes there
T2887 631-633 DT denotes no
T2888 634-643 NN denotes depletion
T2889 644-646 IN denotes in
T2890 647-650 DT denotes the
T2891 651-655 NN denotes size
T2892 656-658 IN denotes of
T2893 659-662 DT denotes the
T2894 671-681 NN denotes population
T2895 663-670 JJ denotes mitotic
T2896 682-684 IN denotes in
T2897 685-688 DT denotes the
T2898 701-707 NNS denotes clones
T2899 689-697 JJ denotes Atrxnull
T2900 698-700 NN denotes ES
T2901 707-709 , denotes ,
T2902 709-716 IN denotes despite
T2903 717-722 PRP$ denotes their
T2904 728-734 NN denotes growth
T2905 723-727 JJ denotes slow
T2906 734-735 . denotes .
T2907 735-1013 sentence denotes Finally, we investigated whether the growth defect in the Atrxnull ES cells was due to an up-regulation of apoptosis by staining cells with Annexin V (Figure S2) and found that the proportion of apoptotic cells was not significantly affected by the absence of full-length Atrx.
T2908 736-743 RB denotes Finally
T2909 748-760 VBD denotes investigated
T2910 743-745 , denotes ,
T2911 745-747 PRP denotes we
T2912 761-768 IN denotes whether
T2913 812-815 VBD denotes was
T2914 769-772 DT denotes the
T2915 780-786 NN denotes defect
T2916 773-779 NN denotes growth
T2917 787-789 IN denotes in
T2918 790-793 DT denotes the
T2919 806-811 NNS denotes cells
T2920 794-802 JJ denotes Atrxnull
T2921 803-805 NN denotes ES
T2922 816-819 IN denotes due
T2923 820-822 IN denotes to
T2924 823-825 DT denotes an
T2925 829-839 NN denotes regulation
T2926 826-828 JJ denotes up
T2927 828-829 HYPH denotes -
T2928 840-842 IN denotes of
T2929 843-852 NN denotes apoptosis
T2930 853-855 IN denotes by
T2931 856-864 VBG denotes staining
T2932 865-870 NNS denotes cells
T2933 871-875 IN denotes with
T2934 876-883 NN denotes Annexin
T2935 884-885 CD denotes V
T2936 886-887 -LRB- denotes (
T2937 894-896 NN denotes S2
T2938 887-893 NN denotes Figure
T2939 896-897 -RRB- denotes )
T2940 898-901 CC denotes and
T2941 902-907 VBD denotes found
T2942 908-912 IN denotes that
T2943 969-977 VBN denotes affected
T2944 913-916 DT denotes the
T2945 917-927 NN denotes proportion
T2946 928-930 IN denotes of
T2947 931-940 JJ denotes apoptotic
T2948 941-946 NNS denotes cells
T2949 947-950 VBD denotes was
T2950 951-954 RB denotes not
T2951 955-968 RB denotes significantly
T2952 978-980 IN denotes by
T2953 981-984 DT denotes the
T2954 985-992 NN denotes absence
T2955 993-995 IN denotes of
T2956 996-1000 JJ denotes full
T2957 1001-1007 NN denotes length
T2958 1000-1001 HYPH denotes -
T2959 1008-1012 NN denotes Atrx
T2960 1012-1013 . denotes .
T2961 1013-1153 sentence denotes Thus, the growth defect observed in ES cells lacking Atrx is not due to a specific cell cycle block or significant induction of cell death.
T2962 1014-1018 RB denotes Thus
T2963 1072-1074 VBZ denotes is
T2964 1018-1020 , denotes ,
T2965 1020-1023 DT denotes the
T2966 1031-1037 NN denotes defect
T2967 1024-1030 NN denotes growth
T2968 1038-1046 VBN denotes observed
T2969 1047-1049 IN denotes in
T2970 1050-1052 NN denotes ES
T2971 1053-1058 NNS denotes cells
T2972 1059-1066 VBG denotes lacking
T2973 1067-1071 NN denotes Atrx
T2974 1075-1078 RB denotes not
T2975 1079-1082 IN denotes due
T2976 1083-1085 IN denotes to
T2977 1086-1087 DT denotes a
T2978 1108-1113 NN denotes block
T2979 1088-1096 JJ denotes specific
T2980 1097-1101 NN denotes cell
T2981 1102-1107 NN denotes cycle
T2982 1114-1116 CC denotes or
T2983 1117-1128 JJ denotes significant
T2984 1129-1138 NN denotes induction
T2985 1139-1141 IN denotes of
T2986 1142-1146 NN denotes cell
T2987 1147-1152 NN denotes death
T2988 1152-1153 . denotes .
T2989 1153-1520 sentence denotes While the cause of the proliferative delay is not yet clear, since Atrxnull ES cells appear to undergo higher rates of spontaneous differentiation (unpublished data), it seems likely that the observed growth defect reflects the spontaneous transition from fast-cycling, undifferentiated ES cells into more slowly cycling, differentiated cell types in these cultures.
T2990 1154-1159 IN denotes While
T2991 1197-1199 VBZ denotes is
T2992 1160-1163 DT denotes the
T2993 1164-1169 NN denotes cause
T2994 1170-1172 IN denotes of
T2995 1173-1176 DT denotes the
T2996 1191-1196 NN denotes delay
T2997 1177-1190 JJ denotes proliferative
T2998 1324-1329 VBZ denotes seems
T2999 1200-1203 RB denotes not
T3000 1204-1207 RB denotes yet
T3001 1208-1213 JJ denotes clear
T3002 1213-1215 , denotes ,
T3003 1215-1220 IN denotes since
T3004 1239-1245 VBP denotes appear
T3005 1221-1229 JJ denotes Atrxnull
T3006 1233-1238 NNS denotes cells
T3007 1230-1232 NN denotes ES
T3008 1246-1248 TO denotes to
T3009 1249-1256 VB denotes undergo
T3010 1257-1263 JJR denotes higher
T3011 1264-1269 NNS denotes rates
T3012 1270-1272 IN denotes of
T3013 1273-1284 JJ denotes spontaneous
T3014 1285-1300 NN denotes differentiation
T3015 1301-1302 -LRB- denotes (
T3016 1314-1318 NNS denotes data
T3017 1302-1313 JJ denotes unpublished
T3018 1318-1319 -RRB- denotes )
T3019 1319-1321 , denotes ,
T3020 1321-1323 PRP denotes it
T3021 1330-1336 JJ denotes likely
T3022 1337-1341 IN denotes that
T3023 1369-1377 VBZ denotes reflects
T3024 1342-1345 DT denotes the
T3025 1362-1368 NN denotes defect
T3026 1346-1354 VBN denotes observed
T3027 1355-1361 NN denotes growth
T3028 1378-1381 DT denotes the
T3029 1394-1404 NN denotes transition
T3030 1382-1393 JJ denotes spontaneous
T3031 1405-1409 IN denotes from
T3032 1410-1414 RB denotes fast
T3033 1415-1422 VBG denotes cycling
T3034 1414-1415 HYPH denotes -
T3035 1444-1449 NNS denotes cells
T3036 1422-1424 , denotes ,
T3037 1424-1440 JJ denotes undifferentiated
T3038 1441-1443 NN denotes ES
T3039 1450-1454 IN denotes into
T3040 1455-1459 RBR denotes more
T3041 1460-1466 RB denotes slowly
T3042 1467-1474 VBG denotes cycling
T3043 1496-1501 NNS denotes types
T3044 1474-1476 , denotes ,
T3045 1476-1490 JJ denotes differentiated
T3046 1491-1495 NN denotes cell
T3047 1502-1504 IN denotes in
T3048 1505-1510 DT denotes these
T3049 1511-1519 NNS denotes cultures
T3050 1519-1520 . denotes .
R1530 T2767 T2768 aux To,investigate
R1531 T2768 T2769 advcl investigate,analysed
R1532 T2770 T2771 det a,defect
R1533 T2771 T2768 dobj defect,investigate
R1534 T2772 T2771 amod possible,defect
R1535 T2773 T2774 compound cell,cycle
R1536 T2774 T2771 compound cycle,defect
R1537 T2775 T2774 punct -,cycle
R1538 T2776 T2771 prep in,defect
R1539 T2777 T2778 det the,absence
R1540 T2778 T2776 pobj absence,in
R1541 T2779 T2778 prep of,absence
R1542 T2780 T2779 pobj Atrx,of
R1543 T2781 T2769 punct ", ",analysed
R1544 T2782 T2769 nsubj we,analysed
R1545 T2783 T2784 det the,distribution
R1546 T2784 T2769 dobj distribution,analysed
R1547 T2785 T2786 compound cell,cycle
R1548 T2786 T2784 compound cycle,distribution
R1549 T2787 T2784 prep of,distribution
R1550 T2788 T2789 npadvmod bromodeoxyuridine,pulsed
R1551 T2789 T2794 amod pulsed,cells
R1552 T2790 T2788 punct (,bromodeoxyuridine
R1553 T2791 T2788 appos BrdU,bromodeoxyuridine
R1554 T2792 T2789 punct ),pulsed
R1555 T2793 T2789 punct -,pulsed
R1556 T2794 T2787 pobj cells,of
R1557 T2795 T2794 compound ES,cells
R1558 T2796 T2769 prep by,analysed
R1559 T2797 T2798 compound flow,cytometry
R1560 T2798 T2796 pobj cytometry,by
R1561 T2799 T2800 punct (,S1A
R1562 T2800 T2769 parataxis S1A,analysed
R1563 T2801 T2800 compound Figure,S1A
R1564 T2802 T2800 punct ),S1A
R1565 T2803 T2769 punct .,analysed
R1566 T2805 T2806 advmod Surprisingly,exhibited
R1567 T2807 T2806 punct ", ",exhibited
R1568 T2808 T2809 det both,clones
R1569 T2809 T2806 nsubj clones,exhibited
R1570 T2810 T2811 amod Atrxnull,cell
R1571 T2811 T2809 compound cell,clones
R1572 T2812 T2811 compound ES,cell
R1573 T2813 T2814 det a,profile
R1574 T2814 T2806 dobj profile,exhibited
R1575 T2815 T2816 compound cell,cycle
R1576 T2816 T2814 compound cycle,profile
R1577 T2817 T2818 dep that,was
R1578 T2818 T2814 relcl was,profile
R1579 T2819 T2818 acomp indistinguishable,was
R1580 T2820 T2819 prep from,indistinguishable
R1581 T2821 T2822 compound ES,cells
R1582 T2822 T2820 pobj cells,from
R1583 T2823 T2822 acl bearing,cells
R1584 T2824 T2825 det a,allele
R1585 T2825 T2823 dobj allele,bearing
R1586 T2826 T2825 amod functional,allele
R1587 T2827 T2825 compound Atrx,allele
R1588 T2828 T2825 punct (,allele
R1589 T2829 T2825 appos Atrx WT,allele
R1590 T2830 T2829 cc or,Atrx WT
R1591 T2831 T2829 conj Atrx flox,Atrx WT
R1592 T2832 T2806 punct ),exhibited
R1593 T2833 T2806 punct .,exhibited
R1594 T2835 T2836 nsubj We,quantitated
R1595 T2837 T2836 advmod also,quantitated
R1596 T2838 T2836 advmod specifically,quantitated
R1597 T2839 T2840 det the,index
R1598 T2840 T2836 dobj index,quantitated
R1599 T2841 T2840 amod mitotic,index
R1600 T2842 T2840 prep within,index
R1601 T2843 T2844 det each,population
R1602 T2844 T2842 pobj population,within
R1603 T2845 T2836 prep by,quantitated
R1604 T2846 T2847 compound flow,cytometry
R1605 T2847 T2845 pobj cytometry,by
R1606 T2848 T2836 prep after,quantitated
R1607 T2849 T2848 pcomp staining,after
R1608 T2850 T2851 compound ES,cells
R1609 T2851 T2849 dobj cells,staining
R1610 T2852 T2849 prep for,staining
R1611 T2853 T2854 amod phosphorylated,H3
R1612 T2854 T2852 pobj H3,for
R1613 T2855 T2856 punct (,Ser10
R1614 T2856 T2853 parataxis Ser10,phosphorylated
R1615 T2857 T2856 punct ),Ser10
R1616 T2858 T2854 compound histone,H3
R1617 T2859 T2854 punct ", ",H3
R1618 T2860 T2861 det a,marker
R1619 T2861 T2854 appos marker,H3
R1620 T2862 T2861 amod specific,marker
R1621 T2863 T2861 prep of,marker
R1622 T2864 T2863 pobj mitosis,of
R1623 T2865 T2866 punct (,S1B
R1624 T2866 T2836 parataxis S1B,quantitated
R1625 T2867 T2866 compound Figure,S1B
R1626 T2868 T2866 punct ),S1B
R1627 T2869 T2870 punct [,13
R1628 T2870 T2836 parataxis 13,quantitated
R1629 T2871 T2870 punct ],13
R1630 T2872 T2836 punct .,quantitated
R1631 T2874 T2875 advcl Consistent,was
R1632 T2876 T2874 prep with,Consistent
R1633 T2877 T2878 det the,profile
R1634 T2878 T2876 pobj profile,with
R1635 T2879 T2878 amod normal,profile
R1636 T2880 T2881 compound cell,cycle
R1637 T2881 T2878 compound cycle,profile
R1638 T2882 T2881 punct -,cycle
R1639 T2883 T2878 acl observed,profile
R1640 T2884 T2883 advmod above,observed
R1641 T2885 T2875 punct ", ",was
R1642 T2886 T2875 expl there,was
R1643 T2887 T2888 det no,depletion
R1644 T2888 T2875 attr depletion,was
R1645 T2889 T2888 prep in,depletion
R1646 T2890 T2891 det the,size
R1647 T2891 T2889 pobj size,in
R1648 T2892 T2891 prep of,size
R1649 T2893 T2894 det the,population
R1650 T2894 T2892 pobj population,of
R1651 T2895 T2894 amod mitotic,population
R1652 T2896 T2875 prep in,was
R1653 T2897 T2898 det the,clones
R1654 T2898 T2896 pobj clones,in
R1655 T2899 T2898 amod Atrxnull,clones
R1656 T2900 T2898 compound ES,clones
R1657 T2901 T2875 punct ", ",was
R1658 T2902 T2875 prep despite,was
R1659 T2903 T2904 poss their,growth
R1660 T2904 T2902 pobj growth,despite
R1661 T2905 T2904 amod slow,growth
R1662 T2906 T2875 punct .,was
R1663 T2908 T2909 advmod Finally,investigated
R1664 T2910 T2909 punct ", ",investigated
R1665 T2911 T2909 nsubj we,investigated
R1666 T2912 T2913 mark whether,was
R1667 T2913 T2909 ccomp was,investigated
R1668 T2914 T2915 det the,defect
R1669 T2915 T2913 nsubj defect,was
R1670 T2916 T2915 compound growth,defect
R1671 T2917 T2915 prep in,defect
R1672 T2918 T2919 det the,cells
R1673 T2919 T2917 pobj cells,in
R1674 T2920 T2921 amod Atrxnull,ES
R1675 T2921 T2919 compound ES,cells
R1676 T2922 T2913 prep due,was
R1677 T2923 T2922 pcomp to,due
R1678 T2924 T2925 det an,regulation
R1679 T2925 T2922 pobj regulation,due
R1680 T2926 T2925 amod up,regulation
R1681 T2927 T2925 punct -,regulation
R1682 T2928 T2925 prep of,regulation
R1683 T2929 T2928 pobj apoptosis,of
R1684 T2930 T2909 prep by,investigated
R1685 T2931 T2930 pcomp staining,by
R1686 T2932 T2931 dobj cells,staining
R1687 T2933 T2931 prep with,staining
R1688 T2934 T2933 pobj Annexin,with
R1689 T2935 T2934 nummod V,Annexin
R1690 T2936 T2937 punct (,S2
R1691 T2937 T2909 parataxis S2,investigated
R1692 T2938 T2937 compound Figure,S2
R1693 T2939 T2937 punct ),S2
R1694 T2940 T2909 cc and,investigated
R1695 T2941 T2909 conj found,investigated
R1696 T2942 T2943 mark that,affected
R1697 T2943 T2941 ccomp affected,found
R1698 T2944 T2945 det the,proportion
R1699 T2945 T2943 nsubjpass proportion,affected
R1700 T2946 T2945 prep of,proportion
R1701 T2947 T2948 amod apoptotic,cells
R1702 T2948 T2946 pobj cells,of
R1703 T2949 T2943 auxpass was,affected
R1704 T2950 T2943 neg not,affected
R1705 T2951 T2943 advmod significantly,affected
R1706 T2952 T2943 agent by,affected
R1707 T2953 T2954 det the,absence
R1708 T2954 T2952 pobj absence,by
R1709 T2955 T2954 prep of,absence
R1710 T2956 T2957 amod full,length
R1711 T2957 T2959 compound length,Atrx
R1712 T2958 T2957 punct -,length
R1713 T2959 T2955 pobj Atrx,of
R1714 T2960 T2909 punct .,investigated
R1715 T2962 T2963 advmod Thus,is
R1716 T2964 T2963 punct ", ",is
R1717 T2965 T2966 det the,defect
R1718 T2966 T2963 nsubj defect,is
R1719 T2967 T2966 compound growth,defect
R1720 T2968 T2966 acl observed,defect
R1721 T2969 T2968 prep in,observed
R1722 T2970 T2971 compound ES,cells
R1723 T2971 T2969 pobj cells,in
R1724 T2972 T2971 acl lacking,cells
R1725 T2973 T2972 dobj Atrx,lacking
R1726 T2974 T2963 neg not,is
R1727 T2975 T2963 prep due,is
R1728 T2976 T2975 pcomp to,due
R1729 T2977 T2978 det a,block
R1730 T2978 T2975 pobj block,due
R1731 T2979 T2978 amod specific,block
R1732 T2980 T2981 compound cell,cycle
R1733 T2981 T2978 compound cycle,block
R1734 T2982 T2978 cc or,block
R1735 T2983 T2984 amod significant,induction
R1736 T2984 T2978 conj induction,block
R1737 T2985 T2984 prep of,induction
R1738 T2986 T2987 compound cell,death
R1739 T2987 T2985 pobj death,of
R1740 T2988 T2963 punct .,is
R1741 T2990 T2991 mark While,is
R1742 T2991 T2998 advcl is,seems
R1743 T2992 T2993 det the,cause
R1744 T2993 T2991 nsubj cause,is
R1745 T2994 T2993 prep of,cause
R1746 T2995 T2996 det the,delay
R1747 T2996 T2994 pobj delay,of
R1748 T2997 T2996 amod proliferative,delay
R1749 T2999 T2991 neg not,is
R1750 T3000 T2991 advmod yet,is
R1751 T3001 T2991 acomp clear,is
R1752 T3002 T2991 punct ", ",is
R1753 T3003 T3004 mark since,appear
R1754 T3004 T2991 advcl appear,is
R1755 T3005 T3006 amod Atrxnull,cells
R1756 T3006 T3004 nsubj cells,appear
R1757 T3007 T3006 compound ES,cells
R1758 T3008 T3009 aux to,undergo
R1759 T3009 T3004 xcomp undergo,appear
R1760 T3010 T3011 amod higher,rates
R1761 T3011 T3009 dobj rates,undergo
R1762 T3012 T3011 prep of,rates
R1763 T3013 T3014 amod spontaneous,differentiation
R1764 T3014 T3012 pobj differentiation,of
R1765 T3015 T3016 punct (,data
R1766 T3016 T2991 meta data,is
R1767 T3017 T3016 amod unpublished,data
R1768 T3018 T3016 punct ),data
R1769 T3019 T2998 punct ", ",seems
R1770 T3020 T2998 nsubj it,seems
R1771 T3021 T2998 oprd likely,seems
R1772 T3022 T3023 mark that,reflects
R1773 T3023 T2998 ccomp reflects,seems
R1774 T3024 T3025 det the,defect
R1775 T3025 T3023 nsubj defect,reflects
R1776 T3026 T3025 amod observed,defect
R1777 T3027 T3025 compound growth,defect
R1778 T3028 T3029 det the,transition
R1779 T3029 T3023 dobj transition,reflects
R1780 T3030 T3029 amod spontaneous,transition
R1781 T3031 T3029 prep from,transition
R1782 T3032 T3033 advmod fast,cycling
R1783 T3033 T3035 amod cycling,cells
R1784 T3034 T3033 punct -,cycling
R1785 T3035 T3031 pobj cells,from
R1786 T3036 T3035 punct ", ",cells
R1787 T3037 T3035 amod undifferentiated,cells
R1788 T3038 T3035 compound ES,cells
R1789 T3039 T3029 prep into,transition
R1790 T3040 T3041 advmod more,slowly
R1791 T3041 T3042 advmod slowly,cycling
R1792 T3042 T3043 amod cycling,types
R1793 T3043 T3039 pobj types,into
R1794 T3044 T3043 punct ", ",types
R1795 T3045 T3043 amod differentiated,types
R1796 T3046 T3043 compound cell,types
R1797 T3047 T3023 prep in,reflects
R1798 T3048 T3049 det these,cultures
R1799 T3049 T3047 pobj cultures,in
R1800 T3050 T2998 punct .,seems

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2387 26-30 CL_GO_EXT:cell denotes cell
T2388 26-36 GO:0007049 denotes cell-cycle
T2389 62-66 PR_EXT:000004503 denotes Atrx
T2390 84-88 CL_GO_EXT:cell denotes cell
T2391 84-94 GO:0007049 denotes cell cycle
T2392 111-128 CHEBI:472552 denotes bromodeoxyuridine
T2393 130-134 CHEBI:472552 denotes BrdU
T2394 143-151 CL:0002322 denotes ES cells
T2395 146-151 CL_GO_EXT:cell denotes cells
T2396 203-207 PR_EXT:000004503 denotes Atrx
T2397 207-211 SO_EXT:sequence_nullness denotes null
T2398 212-219 CL:0002322 denotes ES cell
T2399 215-219 CL_GO_EXT:cell denotes cell
T2400 220-226 SO_EXT:sequence_cloned_entity denotes clones
T2401 239-243 CL_GO_EXT:cell denotes cell
T2402 239-249 GO:0007049 denotes cell cycle
T2403 290-298 CL:0002322 denotes ES cells
T2404 293-298 CL_GO_EXT:cell denotes cells
T2405 320-324 PR_EXT:000004503 denotes Atrx
T2406 325-331 SO_EXT:0001023 denotes allele
T2407 333-337 PR_EXT:000004503 denotes Atrx
T2408 338-340 SO_EXT:wild_type_entity_or_quality denotes WT
T2409 344-348 PR_EXT:000004503 denotes Atrx
T2410 349-353 SO:0000359 denotes flox
T2411 393-400 GO:0007067 denotes mitotic
T2412 463-471 CL:0002322 denotes ES cells
T2413 466-471 CL_GO_EXT:cell denotes cells
T2414 476-490 GO_PATO_EXT:phosphorylation_process_or_quality denotes phosphorylated
T2415 499-506 CHEBI:15358 denotes histone
T2416 499-509 PR_EXT:000027594 denotes histone H3
T2417 522-528 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T2418 532-539 GO:0007067 denotes mitosis
T2419 586-590 CL_GO_EXT:cell denotes cell
T2420 586-596 GO:0007049 denotes cell-cycle
T2421 663-670 GO:0007067 denotes mitotic
T2422 689-693 PR_EXT:000004503 denotes Atrx
T2423 693-697 SO_EXT:sequence_nullness denotes null
T2424 698-700 CL:0002322 denotes ES
T2425 701-707 SO_EXT:sequence_cloned_entity denotes clones
T2426 728-734 GO_EXT:biological_growth_entity_or_process denotes growth
T2427 773-779 GO_EXT:biological_growth_entity_or_process denotes growth
T2428 794-798 PR_EXT:000004503 denotes Atrx
T2429 798-802 SO_EXT:sequence_nullness denotes null
T2430 803-811 CL:0002322 denotes ES cells
T2431 806-811 CL_GO_EXT:cell denotes cells
T2432 826-852 GO:0043065 denotes up-regulation of apoptosis
T2433 865-870 CL_GO_EXT:cell denotes cells
T2434 876-885 PR_EXT:000004078 denotes Annexin V
T2435 931-940 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T2436 931-946 CL:0000445 denotes apoptotic cells
T2437 941-946 CL_GO_EXT:cell denotes cells
T2438 1008-1012 PR_EXT:000004503 denotes Atrx
T2439 1024-1030 GO_EXT:biological_growth_entity_or_process denotes growth
T2440 1050-1058 CL:0002322 denotes ES cells
T2441 1053-1058 CL_GO_EXT:cell denotes cells
T2442 1067-1071 PR_EXT:000004503 denotes Atrx
T2443 1097-1101 CL_GO_EXT:cell denotes cell
T2444 1097-1107 GO:0007049 denotes cell cycle
T2445 1142-1146 CL_GO_EXT:cell denotes cell
T2446 1142-1152 GO:0008219 denotes cell death
T2447 1177-1190 GO_PATO_EXT:cell_proliferation_or_proliferativity denotes proliferative
T2448 1221-1225 PR_EXT:000004503 denotes Atrx
T2449 1225-1229 SO_EXT:sequence_nullness denotes null
T2450 1230-1238 CL:0002322 denotes ES cells
T2451 1233-1238 CL_GO_EXT:cell denotes cells
T2452 1285-1300 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T2453 1355-1361 GO_EXT:biological_growth_entity_or_process denotes growth
T2454 1426-1440 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T2455 1441-1449 CL:0002322 denotes ES cells
T2456 1444-1449 CL_GO_EXT:cell denotes cells
T2457 1476-1490 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T2458 1491-1495 CL_GO_EXT:cell denotes cell

2_test

Id Subject Object Predicate Lexical cue
16628246-206429-85799748 554-556 206429 denotes 13
T34229 554-556 206429 denotes 13

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2251 26-36 GO:0007049 denotes cell-cycle
T2252 62-66 PR:000004503 denotes Atrx
T2253 84-94 GO:0007049 denotes cell cycle
T2254 111-128 CHEBI:472552 denotes bromodeoxyuridine
T2255 130-134 CHEBI:472552 denotes BrdU
T2256 143-151 CL:0002322 denotes ES cells
T2257 203-207 PR:000004503 denotes Atrx
T2258 212-219 CL:0002322 denotes ES cell
T2259 239-249 GO:0007049 denotes cell cycle
T2260 290-298 CL:0002322 denotes ES cells
T2261 320-324 PR:000004503 denotes Atrx
T2262 325-331 SO:0001023 denotes allele
T2263 333-337 PR:000004503 denotes Atrx
T2264 344-348 PR:000004503 denotes Atrx
T2265 349-353 SO:0000359 denotes flox
T2266 393-400 GO:0007067 denotes mitotic
T2267 463-471 CL:0002322 denotes ES cells
T2268 499-506 CHEBI:15358 denotes histone
T2269 499-509 PR:000027594 denotes histone H3
T2270 532-539 GO:0007067 denotes mitosis
T2271 586-596 GO:0007049 denotes cell-cycle
T2272 663-670 GO:0007067 denotes mitotic
T2273 689-693 PR:000004503 denotes Atrx
T2274 698-700 CL:0002322 denotes ES
T2275 794-798 PR:000004503 denotes Atrx
T2276 803-811 CL:0002322 denotes ES cells
T2277 826-852 GO:0043065 denotes up-regulation of apoptosis
T2278 876-885 PR:000004078 denotes Annexin V
T2279 931-946 CL:0000445 denotes apoptotic cells
T2280 1008-1012 PR:000004503 denotes Atrx
T2281 1050-1058 CL:0002322 denotes ES cells
T2282 1067-1071 PR:000004503 denotes Atrx
T2283 1097-1107 GO:0007049 denotes cell cycle
T2284 1142-1152 GO:0008219 denotes cell death
T2285 1221-1225 PR:000004503 denotes Atrx
T2286 1230-1238 CL:0002322 denotes ES cells
T2287 1441-1449 CL:0002322 denotes ES cells