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PMC:1435744 / 42740-43281 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T24522 6-9 CHEBI_SO_EXT:RNA denotes RNA
T24523 33-39 UBERON:0000479 denotes tissue
T24524 70-73 CHEBI_SO_EXT:RNA denotes RNA
T24525 78-97 GO:0001171 denotes reverse transcribed
T24526 132-134 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T24527 139-146 SO_EXT:0000112 denotes primers
T24528 159-166 SO_EXT:0000188 denotes introns
T24529 185-189 PR_EXT:000014441 denotes mr-s
T24530 190-194 SO_EXT:cDNA denotes cDNA
T24531 294-296 SO_EXT:0000028 denotes bp
T24532 357-363 SO_EXT:0000112 denotes Primer
T24533 374-379 NCBITaxon:10088 denotes mouse
T24534 380-385 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes G3PDH
T24535 472-474 SO_EXT:0000028 denotes bp

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T24512 33-39 UBERON:0000479 denotes tissue
T24513 78-97 GO:0001171 denotes reverse transcribed
T24514 139-146 SO:0000112 denotes primers
T24515 159-166 SO:0000188 denotes introns
T24516 185-189 PR:000014441 denotes mr-s
T24517 294-296 SO:0000028 denotes bp
T24518 357-363 SO:0000112 denotes Primer
T24519 374-379 NCBITaxon:10088 denotes mouse
T24520 472-474 SO:0000028 denotes bp

craft-sa-dev

Id Subject Object Predicate Lexical cue
T24541 0-5 JJ denotes Total
T24542 6-9 NN denotes RNA
T24543 14-22 VBN denotes isolated
T24544 10-13 VBD denotes was
T24545 23-27 IN denotes from
T24546 28-32 DT denotes each
T24547 33-39 NN denotes tissue
T24548 40-45 VBG denotes using
T24549 46-52 NN denotes Trizol
T24550 52-53 . denotes .
T24551 53-131 sentence denotes A 1 μg of total RNA was reverse transcribed using SuperscriptII (Invitrogen).
T24552 54-55 DT denotes A
T24553 58-60 NN denotes μg
T24554 56-57 CD denotes 1
T24555 86-97 VBN denotes transcribed
T24556 61-63 IN denotes of
T24557 64-69 JJ denotes total
T24558 70-73 NN denotes RNA
T24559 74-77 VBD denotes was
T24560 78-85 JJ denotes reverse
T24561 98-103 VBG denotes using
T24562 104-117 NNP denotes SuperscriptII
T24563 118-119 -LRB- denotes (
T24564 119-129 NNP denotes Invitrogen
T24565 129-130 -RRB- denotes )
T24566 130-131 . denotes .
T24567 131-272 sentence denotes RT-PCR primers, which span introns, for detection of mr-s cDNA were 5'-TGTCCAGCCCAGCCAACCCAAGGAGACGACA-3' and 5'-TGTGGTCTCCTCATCAGTGAAGA-3'.
T24568 132-134 NN denotes RT
T24569 135-138 NN denotes PCR
T24570 134-135 HYPH denotes -
T24571 139-146 NNS denotes primers
T24572 195-199 VBD denotes were
T24573 146-148 , denotes ,
T24574 148-153 WDT denotes which
T24575 154-158 VBP denotes span
T24576 159-166 NNS denotes introns
T24577 166-168 , denotes ,
T24578 168-171 IN denotes for
T24579 172-181 NN denotes detection
T24580 182-184 IN denotes of
T24581 185-187 NN denotes mr
T24582 188-189 NN denotes s
T24583 187-188 HYPH denotes -
T24584 190-194 NN denotes cDNA
T24585 200-201 CD denotes 5
T24586 203-234 NN denotes TGTCCAGCCCAGCCAACCCAAGGAGACGACA
T24587 201-202 SYM denotes '
T24588 202-203 HYPH denotes -
T24589 234-235 HYPH denotes -
T24590 235-236 CD denotes 3
T24591 236-237 SYM denotes '
T24592 238-241 CC denotes and
T24593 242-243 CD denotes 5
T24594 245-268 NN denotes TGTGGTCTCCTCATCAGTGAAGA
T24595 243-244 SYM denotes '
T24596 244-245 HYPH denotes -
T24597 268-269 HYPH denotes -
T24598 269-270 CD denotes 3
T24599 270-271 SYM denotes '
T24600 271-272 . denotes .
T24601 272-356 sentence denotes Product size was 292 bp (positions 965–1256 of Genbank Accession Number #AY458844).
T24602 273-280 NN denotes Product
T24603 281-285 NN denotes size
T24604 286-289 VBD denotes was
T24605 290-293 CD denotes 292
T24606 294-296 NN denotes bp
T24607 297-298 -LRB- denotes (
T24608 308-311 CD denotes 965
T24609 298-307 NNS denotes positions
T24610 311-312 SYM denotes –
T24611 312-316 CD denotes 1256
T24612 317-319 IN denotes of
T24613 320-327 NNP denotes Genbank
T24614 346-354 NN denotes AY458844
T24615 328-337 NNP denotes Accession
T24616 338-344 NNP denotes Number
T24617 345-346 SYM denotes #
T24618 354-355 -RRB- denotes )
T24619 355-356 . denotes .
T24620 356-541 sentence denotes Primer pairs for mouse G3PDH were 5'-ACCACAGTCCATGCCATCAC-3' and 5'-TCCACCACCCTGTTGCTGTA- 3' which amplified a 452-bp product (positions 587–1038 of Genbank Accession Number #BC85275).
T24621 357-363 NN denotes Primer
T24622 364-369 NNS denotes pairs
T24623 386-390 VBD denotes were
T24624 370-373 IN denotes for
T24625 374-379 NN denotes mouse
T24626 380-385 NN denotes G3PDH
T24627 391-392 CD denotes 5
T24628 394-414 NN denotes ACCACAGTCCATGCCATCAC
T24629 392-393 SYM denotes '
T24630 393-394 HYPH denotes -
T24631 414-415 HYPH denotes -
T24632 415-416 CD denotes 3
T24633 416-417 SYM denotes '
T24634 418-421 CC denotes and
T24635 422-423 CD denotes 5
T24636 425-445 NN denotes TCCACCACCCTGTTGCTGTA
T24637 423-424 SYM denotes '
T24638 424-425 HYPH denotes -
T24639 445-446 HYPH denotes -
T24640 447-448 CD denotes 3
T24641 448-449 SYM denotes '
T24642 450-455 WDT denotes which
T24643 456-465 VBD denotes amplified
T24644 466-467 DT denotes a
T24645 475-482 NN denotes product
T24646 468-471 CD denotes 452
T24647 472-474 NN denotes bp
T24648 471-472 HYPH denotes -
T24649 483-484 -LRB- denotes (
T24650 494-497 CD denotes 587
T24651 484-493 NNS denotes positions
T24652 497-498 SYM denotes –
T24653 498-502 CD denotes 1038
T24654 503-505 IN denotes of
T24655 506-513 NNP denotes Genbank
T24656 532-539 NN denotes BC85275
T24657 514-523 NN denotes Accession
T24658 524-530 NN denotes Number
T24659 531-532 SYM denotes #
T24660 539-540 -RRB- denotes )
T24661 540-541 . denotes .
R6976 T24541 T24542 amod Total,RNA
R6977 T24542 T24543 nsubjpass RNA,isolated
R6978 T24544 T24543 auxpass was,isolated
R6979 T24545 T24543 prep from,isolated
R6980 T24546 T24547 det each,tissue
R6981 T24547 T24545 pobj tissue,from
R6982 T24548 T24543 advcl using,isolated
R6983 T24549 T24548 dobj Trizol,using
R6984 T24550 T24543 punct .,isolated
R6985 T24552 T24553 det A,μg
R6986 T24553 T24555 nsubjpass μg,transcribed
R6987 T24554 T24553 nummod 1,μg
R6988 T24556 T24553 prep of,μg
R6989 T24557 T24558 amod total,RNA
R6990 T24558 T24556 pobj RNA,of
R6991 T24559 T24555 auxpass was,transcribed
R6992 T24560 T24555 amod reverse,transcribed
R6993 T24561 T24555 advcl using,transcribed
R6994 T24562 T24561 dobj SuperscriptII,using
R6995 T24563 T24564 punct (,Invitrogen
R6996 T24564 T24562 parataxis Invitrogen,SuperscriptII
R6997 T24565 T24564 punct ),Invitrogen
R6998 T24566 T24555 punct .,transcribed
R6999 T24568 T24569 compound RT,PCR
R7000 T24569 T24571 compound PCR,primers
R7001 T24570 T24569 punct -,PCR
R7002 T24571 T24572 nsubj primers,were
R7003 T24573 T24571 punct ", ",primers
R7004 T24574 T24575 dep which,span
R7005 T24575 T24571 relcl span,primers
R7006 T24576 T24575 dobj introns,span
R7007 T24577 T24571 punct ", ",primers
R7008 T24578 T24571 prep for,primers
R7009 T24579 T24578 pobj detection,for
R7010 T24580 T24579 prep of,detection
R7011 T24581 T24582 compound mr,s
R7012 T24582 T24584 compound s,cDNA
R7013 T24583 T24582 punct -,s
R7014 T24584 T24580 pobj cDNA,of
R7015 T24585 T24586 nummod 5,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7016 T24586 T24572 attr TGTCCAGCCCAGCCAACCCAAGGAGACGACA,were
R7017 T24587 T24585 punct ',5
R7018 T24588 T24586 punct -,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7019 T24589 T24586 punct -,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7020 T24590 T24586 nummod 3,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7021 T24591 T24586 punct ',TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7022 T24592 T24586 cc and,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7023 T24593 T24594 nummod 5,TGTGGTCTCCTCATCAGTGAAGA
R7024 T24594 T24586 conj TGTGGTCTCCTCATCAGTGAAGA,TGTCCAGCCCAGCCAACCCAAGGAGACGACA
R7025 T24595 T24593 punct ',5
R7026 T24596 T24594 punct -,TGTGGTCTCCTCATCAGTGAAGA
R7027 T24597 T24594 punct -,TGTGGTCTCCTCATCAGTGAAGA
R7028 T24598 T24594 nummod 3,TGTGGTCTCCTCATCAGTGAAGA
R7029 T24599 T24594 punct ',TGTGGTCTCCTCATCAGTGAAGA
R7030 T24600 T24572 punct .,were
R7031 T24602 T24603 compound Product,size
R7032 T24603 T24604 nsubj size,was
R7033 T24605 T24606 nummod 292,bp
R7034 T24606 T24604 attr bp,was
R7035 T24607 T24608 punct (,965
R7036 T24608 T24604 parataxis 965,was
R7037 T24609 T24608 nmod positions,965
R7038 T24610 T24611 punct –,1256
R7039 T24611 T24608 prep 1256,965
R7040 T24612 T24608 prep of,965
R7041 T24613 T24614 nmod Genbank,AY458844
R7042 T24614 T24612 pobj AY458844,of
R7043 T24615 T24614 nmod Accession,AY458844
R7044 T24616 T24614 nmod Number,AY458844
R7045 T24617 T24614 punct #,AY458844
R7046 T24618 T24608 punct ),965
R7047 T24619 T24604 punct .,was
R7048 T24621 T24622 compound Primer,pairs
R7049 T24622 T24623 nsubj pairs,were
R7050 T24624 T24622 prep for,pairs
R7051 T24625 T24626 compound mouse,G3PDH
R7052 T24626 T24624 pobj G3PDH,for
R7053 T24627 T24628 nummod 5,ACCACAGTCCATGCCATCAC
R7054 T24628 T24623 attr ACCACAGTCCATGCCATCAC,were
R7055 T24629 T24627 punct ',5
R7056 T24630 T24628 punct -,ACCACAGTCCATGCCATCAC
R7057 T24631 T24628 punct -,ACCACAGTCCATGCCATCAC
R7058 T24632 T24628 nummod 3,ACCACAGTCCATGCCATCAC
R7059 T24633 T24628 punct ',ACCACAGTCCATGCCATCAC
R7060 T24634 T24628 cc and,ACCACAGTCCATGCCATCAC
R7061 T24635 T24636 nummod 5,TCCACCACCCTGTTGCTGTA
R7062 T24636 T24628 conj TCCACCACCCTGTTGCTGTA,ACCACAGTCCATGCCATCAC
R7063 T24637 T24635 punct ',5
R7064 T24638 T24636 punct -,TCCACCACCCTGTTGCTGTA
R7065 T24639 T24636 punct -,TCCACCACCCTGTTGCTGTA
R7066 T24640 T24636 nummod 3,TCCACCACCCTGTTGCTGTA
R7067 T24641 T24636 punct ',TCCACCACCCTGTTGCTGTA
R7068 T24642 T24643 dep which,amplified
R7069 T24643 T24628 relcl amplified,ACCACAGTCCATGCCATCAC
R7070 T24644 T24645 det a,product
R7071 T24645 T24643 dobj product,amplified
R7072 T24646 T24647 nummod 452,bp
R7073 T24647 T24645 compound bp,product
R7074 T24648 T24647 punct -,bp
R7075 T24649 T24650 punct (,587
R7076 T24650 T24643 parataxis 587,amplified
R7077 T24651 T24650 nmod positions,587
R7078 T24652 T24653 punct –,1038
R7079 T24653 T24650 prep 1038,587
R7080 T24654 T24650 prep of,587
R7081 T24655 T24656 nmod Genbank,BC85275
R7082 T24656 T24654 pobj BC85275,of
R7083 T24657 T24656 nmod Accession,BC85275
R7084 T24658 T24656 nmod Number,BC85275
R7085 T24659 T24656 punct #,BC85275
R7086 T24660 T24650 punct ),587
R7087 T24661 T24623 punct .,were