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PMC:1435744 / 40436-41424 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23178 13-18 NCBITaxon:10088 denotes mouse
T23179 19-23 PR_EXT:000014441 denotes mr-s
T23180 24-28 SO_EXT:cDNA denotes cDNA
T23181 124-129 NCBITaxon:10088 denotes mouse
T23182 130-135 SO_EXT:0000704 denotes genes
T23183 136-145 GO:0010467 denotes expressed
T23184 168-174 UBERON:0000966 denotes retina
T23185 238-243 NCBITaxon:10088 denotes mouse
T23186 244-251 UBERON:0000966 denotes retinal
T23187 252-257 SO_EXT:cDNA denotes cDNAs
T23188 263-268 SO_EXT:sequence_cloned_entity denotes clone
T23189 289-292 NCBITaxon:10090 denotes Mm.
T23190 312-320 SO:0000857 denotes homology
T23191 350-355 SO_EXT:0000704 denotes genes
T23192 363-365 SO_EXT:0000028 denotes bp
T23193 366-370 SO_EXT:cDNA denotes cDNA
T23194 388-393 SO_EXT:sequence_cloned_entity denotes clone
T23195 395-403 SO_EXT:sequence_coding_function denotes encoding
T23196 404-415 CHEBI_SO_EXT:amino_acid denotes amino acids
T23197 441-443 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T23198 453-458 NCBITaxon:10088 denotes mouse
T23199 462-469 UBERON:0000966 denotes retinal
T23200 470-474 SO_EXT:cDNA denotes cDNA
T23201 506-511 CHEBI_SO_EXT:molecular_probe denotes probe
T23202 543-556 GO:0097617 denotes hybridization
T23203 570-583 GO:0097617 denotes hybridization
T23204 587-592 NCBITaxon:10088 denotes mouse
T23205 599-606 UBERON:0000966 denotes retinal
T23206 607-611 SO_EXT:cDNA denotes cDNA
T23207 644-649 NCBITaxon:10088 denotes mouse
T23208 650-654 SO_EXT:cDNA denotes cDNA
T23209 688-694 SO_EXT:sequence_cloned_entity denotes clones
T23210 729-733 PR_EXT:000014441 denotes mr-s
T23211 747-755 SO_EXT:sequence_insertion_process denotes inserted
T23212 789-792 CHEBI_SO_EXT:DNA denotes DNA
T23213 870-880 CHEBI_SO_EXT:nucleotide denotes nucleotide
T23214 881-889 SO_EXT:biological_sequence denotes sequence
T23215 894-898 PR_EXT:000014441 denotes mr-s
T23216 899-903 SO_EXT:0000704 denotes gene

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23156 13-18 NCBITaxon:10088 denotes mouse
T23157 19-23 PR:000014441 denotes mr-s
T23158 124-129 NCBITaxon:10088 denotes mouse
T23159 130-135 SO:0000704 denotes genes
T23160 136-145 GO:0010467 denotes expressed
T23161 168-174 UBERON:0000966 denotes retina
T23162 238-243 NCBITaxon:10088 denotes mouse
T23163 244-251 UBERON:0000966 denotes retinal
T23164 289-292 NCBITaxon:10090 denotes Mm.
T23165 312-320 SO:0000857 denotes homology
T23166 350-355 SO:0000704 denotes genes
T23167 363-365 SO:0000028 denotes bp
T23168 453-458 NCBITaxon:10088 denotes mouse
T23169 462-469 UBERON:0000966 denotes retinal
T23170 543-556 GO:0097617 denotes hybridization
T23171 570-583 GO:0097617 denotes hybridization
T23172 587-592 NCBITaxon:10088 denotes mouse
T23173 599-606 UBERON:0000966 denotes retinal
T23174 644-649 NCBITaxon:10088 denotes mouse
T23175 729-733 PR:000014441 denotes mr-s
T23176 894-898 PR:000014441 denotes mr-s
T23177 899-903 SO:0000704 denotes gene

craft-sa-dev

Id Subject Object Predicate Lexical cue
T23217 0-9 NN denotes Isolation
T23218 10-12 IN denotes of
T23219 13-18 NN denotes mouse
T23220 24-28 NN denotes cDNA
T23221 19-21 NN denotes mr
T23222 22-23 NN denotes s
T23223 21-22 HYPH denotes -
T23224 28-175 sentence denotes We used the bioinformatics method Digital Differential Display (NCBI, UniGene) to screen novel mouse genes expressed preferentially in the retina.
T23225 29-31 PRP denotes We
T23226 32-36 VBD denotes used
T23227 37-40 DT denotes the
T23228 56-62 NN denotes method
T23229 41-55 NN denotes bioinformatics
T23230 63-70 NNP denotes Digital
T23231 84-91 NNP denotes Display
T23232 71-83 NNP denotes Differential
T23233 92-93 -LRB- denotes (
T23234 93-97 NNP denotes NCBI
T23235 97-99 , denotes ,
T23236 99-106 NNP denotes UniGene
T23237 106-107 -RRB- denotes )
T23238 108-110 TO denotes to
T23239 111-117 VB denotes screen
T23240 118-123 JJ denotes novel
T23241 130-135 NNS denotes genes
T23242 124-129 NN denotes mouse
T23243 136-145 VBN denotes expressed
T23244 146-160 RB denotes preferentially
T23245 161-163 IN denotes in
T23246 164-167 DT denotes the
T23247 168-174 NN denotes retina
T23248 174-175 . denotes .
T23249 175-258 sentence denotes Some of the clusters in the UniGene database were mainly from mouse retinal cDNAs.
T23250 176-180 DT denotes Some
T23251 221-225 VBD denotes were
T23252 181-183 IN denotes of
T23253 184-187 DT denotes the
T23254 188-196 NNS denotes clusters
T23255 197-199 IN denotes in
T23256 200-203 DT denotes the
T23257 212-220 NN denotes database
T23258 204-211 NNP denotes UniGene
T23259 226-232 RB denotes mainly
T23260 233-237 IN denotes from
T23261 238-243 NN denotes mouse
T23262 252-257 NNS denotes cDNAs
T23263 244-251 JJ denotes retinal
T23264 257-258 . denotes .
T23265 258-356 sentence denotes One clone in these clusters (#Mm. 246385) has a weak homology with the polyhomeotic family genes.
T23266 259-262 CD denotes One
T23267 263-268 NN denotes clone
T23268 301-304 VBZ denotes has
T23269 269-271 IN denotes in
T23270 272-277 DT denotes these
T23271 278-286 NNS denotes clusters
T23272 287-288 -LRB- denotes (
T23273 289-292 NNP denotes Mm.
T23274 288-289 SYM denotes #
T23275 293-299 CD denotes 246385
T23276 299-300 -RRB- denotes )
T23277 305-306 DT denotes a
T23278 312-320 NN denotes homology
T23279 307-311 JJ denotes weak
T23280 321-325 IN denotes with
T23281 326-329 DT denotes the
T23282 350-355 NNS denotes genes
T23283 330-342 JJ denotes polyhomeotic
T23284 343-349 NN denotes family
T23285 355-356 . denotes .
T23286 356-475 sentence denotes A 735-bp cDNA fragment of this clone, encoding amino acids 140–384 was amplified by RT-PCR from mouse P0 retinal cDNA.
T23287 357-358 DT denotes A
T23288 371-379 NN denotes fragment
T23289 359-362 CD denotes 735
T23290 363-365 NN denotes bp
T23291 362-363 HYPH denotes -
T23292 366-370 NN denotes cDNA
T23293 428-437 VBN denotes amplified
T23294 380-382 IN denotes of
T23295 383-387 DT denotes this
T23296 388-393 NN denotes clone
T23297 393-395 , denotes ,
T23298 395-403 VBG denotes encoding
T23299 404-409 NN denotes amino
T23300 416-419 CD denotes 140
T23301 410-415 NNS denotes acids
T23302 419-420 SYM denotes –
T23303 420-423 CD denotes 384
T23304 424-427 VBD denotes was
T23305 438-440 IN denotes by
T23306 441-443 NN denotes RT
T23307 444-447 NN denotes PCR
T23308 443-444 HYPH denotes -
T23309 448-452 IN denotes from
T23310 453-458 NN denotes mouse
T23311 470-474 NN denotes cDNA
T23312 459-461 NN denotes P0
T23313 462-469 JJ denotes retinal
T23314 474-475 . denotes .
T23315 475-584 sentence denotes This fragment was used as the probe for library screening, in situ hybridization and Northern hybridization.
T23316 476-480 DT denotes This
T23317 481-489 NN denotes fragment
T23318 494-498 VBN denotes used
T23319 490-493 VBD denotes was
T23320 499-501 IN denotes as
T23321 502-505 DT denotes the
T23322 506-511 NN denotes probe
T23323 512-515 IN denotes for
T23324 516-523 NN denotes library
T23325 524-533 NN denotes screening
T23326 533-535 , denotes ,
T23327 535-537 FW denotes in
T23328 538-542 FW denotes situ
T23329 543-556 NN denotes hybridization
T23330 557-560 CC denotes and
T23331 561-569 NNP denotes Northern
T23332 570-583 NN denotes hybridization
T23333 583-584 . denotes .
T23334 584-664 sentence denotes A mouse P0-P3 retinal cDNA library was screened using this mouse cDNA fragment.
T23335 585-586 DT denotes A
T23336 612-619 NN denotes library
T23337 587-592 NN denotes mouse
T23338 593-595 NN denotes P0
T23339 595-596 SYM denotes -
T23340 596-598 NN denotes P3
T23341 599-606 JJ denotes retinal
T23342 607-611 NN denotes cDNA
T23343 624-632 VBN denotes screened
T23344 620-623 VBD denotes was
T23345 633-638 VBG denotes using
T23346 639-643 DT denotes this
T23347 655-663 NN denotes fragment
T23348 644-649 NN denotes mouse
T23349 650-654 NN denotes cDNA
T23350 663-664 . denotes .
T23351 664-788 sentence denotes Positive bacteriophage clones were isolated and the full-length mr-s fragment was inserted into pBluescriptII (Stratagene).
T23352 665-673 JJ denotes Positive
T23353 688-694 NNS denotes clones
T23354 674-687 NN denotes bacteriophage
T23355 700-708 VBN denotes isolated
T23356 695-699 VBD denotes were
T23357 709-712 CC denotes and
T23358 713-716 DT denotes the
T23359 734-742 NN denotes fragment
T23360 717-721 JJ denotes full
T23361 722-728 NN denotes length
T23362 721-722 HYPH denotes -
T23363 729-731 NN denotes mr
T23364 732-733 NN denotes s
T23365 731-732 HYPH denotes -
T23366 747-755 VBN denotes inserted
T23367 743-746 VBD denotes was
T23368 756-760 IN denotes into
T23369 761-774 NNP denotes pBluescriptII
T23370 775-776 -LRB- denotes (
T23371 776-786 NNP denotes Stratagene
T23372 786-787 -RRB- denotes )
T23373 787-788 . denotes .
T23374 788-865 sentence denotes DNA sequencing was performed on both strands by the cycle sequencing method.
T23375 789-792 NN denotes DNA
T23376 793-803 NN denotes sequencing
T23377 808-817 VBN denotes performed
T23378 804-807 VBD denotes was
T23379 818-820 IN denotes on
T23380 821-825 DT denotes both
T23381 826-833 NNS denotes strands
T23382 834-836 IN denotes by
T23383 837-840 DT denotes the
T23384 858-864 NN denotes method
T23385 841-846 NN denotes cycle
T23386 847-857 NN denotes sequencing
T23387 864-865 . denotes .
T23388 865-988 sentence denotes The nucleotide sequence for mr-s gene has been deposited in the GenBank database under GenBank Accession Number #AY458844.
T23389 866-869 DT denotes The
T23390 881-889 NN denotes sequence
T23391 870-880 NN denotes nucleotide
T23392 913-922 VBN denotes deposited
T23393 890-893 IN denotes for
T23394 894-896 NN denotes mr
T23395 897-898 NN denotes s
T23396 896-897 HYPH denotes -
T23397 899-903 NN denotes gene
T23398 904-907 VBZ denotes has
T23399 908-912 VBN denotes been
T23400 923-925 IN denotes in
T23401 926-929 DT denotes the
T23402 938-946 NN denotes database
T23403 930-937 NNP denotes GenBank
T23404 947-952 IN denotes under
T23405 953-960 NNP denotes GenBank
T23406 979-987 NN denotes AY458844
T23407 961-970 NNP denotes Accession
T23408 971-977 NNP denotes Number
T23409 978-979 SYM denotes #
T23410 987-988 . denotes .
R6551 T23218 T23217 prep of,Isolation
R6552 T23219 T23220 compound mouse,cDNA
R6553 T23220 T23218 pobj cDNA,of
R6554 T23221 T23222 compound mr,s
R6555 T23222 T23220 compound s,cDNA
R6556 T23223 T23222 punct -,s
R6557 T23225 T23226 nsubj We,used
R6558 T23227 T23228 det the,method
R6559 T23228 T23226 dobj method,used
R6560 T23229 T23228 compound bioinformatics,method
R6561 T23230 T23231 compound Digital,Display
R6562 T23231 T23228 appos Display,method
R6563 T23232 T23231 compound Differential,Display
R6564 T23233 T23234 punct (,NCBI
R6565 T23234 T23228 parataxis NCBI,method
R6566 T23235 T23234 punct ", ",NCBI
R6567 T23236 T23234 npadvmod UniGene,NCBI
R6568 T23237 T23234 punct ),NCBI
R6569 T23238 T23239 aux to,screen
R6570 T23239 T23226 advcl screen,used
R6571 T23240 T23241 amod novel,genes
R6572 T23241 T23239 dobj genes,screen
R6573 T23242 T23241 compound mouse,genes
R6574 T23243 T23241 acl expressed,genes
R6575 T23244 T23243 advmod preferentially,expressed
R6576 T23245 T23243 prep in,expressed
R6577 T23246 T23247 det the,retina
R6578 T23247 T23245 pobj retina,in
R6579 T23248 T23226 punct .,used
R6580 T23250 T23251 nsubj Some,were
R6581 T23252 T23250 prep of,Some
R6582 T23253 T23254 det the,clusters
R6583 T23254 T23252 pobj clusters,of
R6584 T23255 T23250 prep in,Some
R6585 T23256 T23257 det the,database
R6586 T23257 T23255 pobj database,in
R6587 T23258 T23257 compound UniGene,database
R6588 T23259 T23251 advmod mainly,were
R6589 T23260 T23251 prep from,were
R6590 T23261 T23262 nmod mouse,cDNAs
R6591 T23262 T23260 pobj cDNAs,from
R6592 T23263 T23262 amod retinal,cDNAs
R6593 T23264 T23251 punct .,were
R6594 T23266 T23267 nummod One,clone
R6595 T23267 T23268 nsubj clone,has
R6596 T23269 T23267 prep in,clone
R6597 T23270 T23271 det these,clusters
R6598 T23271 T23269 pobj clusters,in
R6599 T23272 T23273 punct (,Mm.
R6600 T23273 T23267 parataxis Mm.,clone
R6601 T23274 T23273 punct #,Mm.
R6602 T23275 T23273 nummod 246385,Mm.
R6603 T23276 T23273 punct ),Mm.
R6604 T23277 T23278 det a,homology
R6605 T23278 T23268 dobj homology,has
R6606 T23279 T23278 amod weak,homology
R6607 T23280 T23278 prep with,homology
R6608 T23281 T23282 det the,genes
R6609 T23282 T23280 pobj genes,with
R6610 T23283 T23282 amod polyhomeotic,genes
R6611 T23284 T23282 compound family,genes
R6612 T23285 T23268 punct .,has
R6613 T23287 T23288 det A,fragment
R6614 T23288 T23293 nsubjpass fragment,amplified
R6615 T23289 T23290 nummod 735,bp
R6616 T23290 T23288 compound bp,fragment
R6617 T23291 T23290 punct -,bp
R6618 T23292 T23288 compound cDNA,fragment
R6619 T23294 T23288 prep of,fragment
R6620 T23295 T23296 det this,clone
R6621 T23296 T23294 pobj clone,of
R6622 T23297 T23288 punct ", ",fragment
R6623 T23298 T23288 acl encoding,fragment
R6624 T23299 T23300 nmod amino,140
R6625 T23300 T23298 dobj 140,encoding
R6626 T23301 T23300 nmod acids,140
R6627 T23302 T23303 punct –,384
R6628 T23303 T23300 prep 384,140
R6629 T23304 T23293 auxpass was,amplified
R6630 T23305 T23293 prep by,amplified
R6631 T23306 T23307 compound RT,PCR
R6632 T23307 T23305 pobj PCR,by
R6633 T23308 T23307 punct -,PCR
R6634 T23309 T23293 prep from,amplified
R6635 T23310 T23311 nmod mouse,cDNA
R6636 T23311 T23309 pobj cDNA,from
R6637 T23312 T23311 nmod P0,cDNA
R6638 T23313 T23311 amod retinal,cDNA
R6639 T23314 T23293 punct .,amplified
R6640 T23316 T23317 det This,fragment
R6641 T23317 T23318 nsubjpass fragment,used
R6642 T23319 T23318 auxpass was,used
R6643 T23320 T23318 prep as,used
R6644 T23321 T23322 det the,probe
R6645 T23322 T23320 pobj probe,as
R6646 T23323 T23318 prep for,used
R6647 T23324 T23325 compound library,screening
R6648 T23325 T23323 pobj screening,for
R6649 T23326 T23325 punct ", ",screening
R6650 T23327 T23328 advmod in,situ
R6651 T23328 T23329 amod situ,hybridization
R6652 T23329 T23325 conj hybridization,screening
R6653 T23330 T23329 cc and,hybridization
R6654 T23331 T23332 compound Northern,hybridization
R6655 T23332 T23329 conj hybridization,hybridization
R6656 T23333 T23318 punct .,used
R6657 T23335 T23336 det A,library
R6658 T23336 T23343 nsubjpass library,screened
R6659 T23337 T23336 nmod mouse,library
R6660 T23338 T23336 nmod P0,library
R6661 T23339 T23340 punct -,P3
R6662 T23340 T23338 prep P3,P0
R6663 T23341 T23336 amod retinal,library
R6664 T23342 T23336 compound cDNA,library
R6665 T23344 T23343 auxpass was,screened
R6666 T23345 T23343 advcl using,screened
R6667 T23346 T23347 det this,fragment
R6668 T23347 T23345 dobj fragment,using
R6669 T23348 T23347 compound mouse,fragment
R6670 T23349 T23347 compound cDNA,fragment
R6671 T23350 T23343 punct .,screened
R6672 T23352 T23353 amod Positive,clones
R6673 T23353 T23355 nsubjpass clones,isolated
R6674 T23354 T23353 compound bacteriophage,clones
R6675 T23356 T23355 auxpass were,isolated
R6676 T23357 T23355 cc and,isolated
R6677 T23358 T23359 det the,fragment
R6678 T23359 T23366 nsubjpass fragment,inserted
R6679 T23360 T23361 amod full,length
R6680 T23361 T23359 compound length,fragment
R6681 T23362 T23361 punct -,length
R6682 T23363 T23364 compound mr,s
R6683 T23364 T23359 compound s,fragment
R6684 T23365 T23364 punct -,s
R6685 T23366 T23355 conj inserted,isolated
R6686 T23367 T23366 auxpass was,inserted
R6687 T23368 T23366 prep into,inserted
R6688 T23369 T23368 pobj pBluescriptII,into
R6689 T23370 T23371 punct (,Stratagene
R6690 T23371 T23366 parataxis Stratagene,inserted
R6691 T23372 T23371 punct ),Stratagene
R6692 T23373 T23366 punct .,inserted
R6693 T23375 T23376 compound DNA,sequencing
R6694 T23376 T23377 nsubjpass sequencing,performed
R6695 T23378 T23377 auxpass was,performed
R6696 T23379 T23377 prep on,performed
R6697 T23380 T23381 det both,strands
R6698 T23381 T23379 pobj strands,on
R6699 T23382 T23377 prep by,performed
R6700 T23383 T23384 det the,method
R6701 T23384 T23382 pobj method,by
R6702 T23385 T23384 compound cycle,method
R6703 T23386 T23384 compound sequencing,method
R6704 T23387 T23377 punct .,performed
R6705 T23389 T23390 det The,sequence
R6706 T23390 T23392 nsubjpass sequence,deposited
R6707 T23391 T23390 compound nucleotide,sequence
R6708 T23393 T23390 prep for,sequence
R6709 T23394 T23395 compound mr,s
R6710 T23395 T23397 compound s,gene
R6711 T23396 T23395 punct -,s
R6712 T23397 T23393 pobj gene,for
R6713 T23398 T23392 aux has,deposited
R6714 T23399 T23392 auxpass been,deposited
R6715 T23400 T23392 prep in,deposited
R6716 T23401 T23402 det the,database
R6717 T23402 T23400 pobj database,in
R6718 T23403 T23402 compound GenBank,database
R6719 T23404 T23392 prep under,deposited
R6720 T23405 T23406 nmod GenBank,AY458844
R6721 T23406 T23404 pobj AY458844,under
R6722 T23407 T23406 nmod Accession,AY458844
R6723 T23408 T23406 nmod Number,AY458844
R6724 T23409 T23406 punct #,AY458844
R6725 T23410 T23392 punct .,deposited