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PMC:1435744 / 22520-23446 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12428 779-783 PR_EXT:000014441 denotes mr-s
T12429 784-791 CHEBI_PR_EXT:protein denotes protein
T12430 831-837 SO_EXT:0000417 denotes domain
T12431 848-856 GO_EXT:biological_direction_or_guidance denotes directed
T12432 857-866 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T12433 893-899 SO_EXT:0000417 denotes domain
T12434 903-907 PR_EXT:000014441 denotes mr-s
T31382 15-19 PR_EXT:000014441 denotes mr-s
T31383 20-27 CHEBI_PR_EXT:protein denotes protein
T31384 50-59 NCBITaxon:40674 denotes mammalian
T31385 60-65 CL_GO_EXT:cell denotes cells
T31386 96-106 SO_EXT:engineered_biological_sequence denotes constructs
T31387 146-152 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes tagged
T31388 161-167 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes tagged
T31389 181-192 CHEBI_SO_EXT:amino_acid denotes amino acids
T31390 210-221 CHEBI_SO_EXT:amino_acid denotes amino acids
T31391 241-252 CHEBI_SO_EXT:amino_acid denotes amino acids
T31392 278-286 SO_EXT:sequence_insertion_process denotes inserted
T31393 299-305 SO_EXT:0000440 denotes vector
T31394 329-339 SO_EXT:engineered_biological_sequence denotes constructs
T31395 361-372 GO:0009294 denotes transfected
T31396 386-391 CL_GO_EXT:cell denotes cells
T31397 442-450 GO:0042571 denotes antibody
T31398 475-483 GO:0042571 denotes antibody
T31399 491-498 CHEBI_PR_EXT:protein denotes protein
T31400 547-553 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes tagged
T31401 563-571 GO_EXT:biological_direction_or_guidance denotes directed
T31402 572-576 PR_EXT:000014441 denotes mr-s
T31403 577-584 SO_EXT:sequence_altered_entity denotes mutants
T31404 634-645 GO:0009294 denotes transfected
T31405 707-715 GO:0042571 denotes antibody
T31406 742-750 GO:0042571 denotes antibody

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T31372 15-19 PR:000014441 denotes mr-s
T31373 50-59 NCBITaxon:40674 denotes mammalian
T31374 299-305 SO:0000440 denotes vector
T31375 361-372 GO:0009294 denotes transfected
T31376 442-450 GO:0042571 denotes antibody
T31377 475-483 GO:0042571 denotes antibody
T31378 572-576 PR:000014441 denotes mr-s
T31379 634-645 GO:0009294 denotes transfected
T31380 707-715 GO:0042571 denotes antibody
T31381 742-750 GO:0042571 denotes antibody
T12265 779-783 PR:000014441 denotes mr-s
T12266 831-837 SO:0000417 denotes domain
T12267 893-899 SO:0000417 denotes domain
T12268 903-907 PR:000014441 denotes mr-s

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13284 924-925 -RRB- denotes )
T13285 925-926 . denotes .
T31407 11-14 DT denotes The
T31408 20-27 NN denotes protein
T31409 15-17 NN denotes mr
T31410 18-19 NN denotes s
T31411 17-18 HYPH denotes -
T31412 37-46 VB denotes associate
T31413 28-31 MD denotes can
T31414 32-36 NN denotes self
T31415 36-37 HYPH denotes -
T31416 47-49 IN denotes in
T31417 50-59 JJ denotes mammalian
T31418 60-65 NNS denotes cells
T31419 65-66 . denotes .
T31420 66-142 sentence denotes (A) Schematic drawing of the constructs used for immunoprecipitation assay.
T31421 67-68 -LRB- denotes (
T31422 68-69 LS denotes A
T31423 81-88 NN denotes drawing
T31424 69-70 -RRB- denotes )
T31425 71-80 JJ denotes Schematic
T31426 89-91 IN denotes of
T31427 92-95 DT denotes the
T31428 96-106 NNS denotes constructs
T31429 107-111 VBN denotes used
T31430 112-115 IN denotes for
T31431 116-135 NN denotes immunoprecipitation
T31432 136-141 NN denotes assay
T31433 141-142 . denotes .
T31434 142-320 sentence denotes HA-tagged or Flag-tagged full-length (amino acids 1 to 542), ΔSAM (amino acids 1 to 400) and SAM (amino acids 401 to 542) regions were inserted into pcDNA3 vector, respectively.
T31435 143-145 NN denotes HA
T31436 146-152 VBN denotes tagged
T31437 145-146 HYPH denotes -
T31438 265-272 NNS denotes regions
T31439 153-155 CC denotes or
T31440 156-160 NN denotes Flag
T31441 161-167 VBN denotes tagged
T31442 160-161 HYPH denotes -
T31443 168-172 JJ denotes full
T31444 173-179 NN denotes length
T31445 172-173 HYPH denotes -
T31446 180-181 -LRB- denotes (
T31447 193-194 CD denotes 1
T31448 181-186 NN denotes amino
T31449 187-192 NNS denotes acids
T31450 195-197 IN denotes to
T31451 198-201 CD denotes 542
T31452 201-202 -RRB- denotes )
T31453 202-204 , denotes ,
T31454 204-208 NN denotes ΔSAM
T31455 209-210 -LRB- denotes (
T31456 222-223 CD denotes 1
T31457 210-215 NN denotes amino
T31458 216-221 NNS denotes acids
T31459 224-226 IN denotes to
T31460 227-230 CD denotes 400
T31461 230-231 -RRB- denotes )
T31462 232-235 CC denotes and
T31463 236-239 NN denotes SAM
T31464 240-241 -LRB- denotes (
T31465 253-256 CD denotes 401
T31466 241-246 NN denotes amino
T31467 247-252 NNS denotes acids
T31468 257-259 IN denotes to
T31469 260-263 CD denotes 542
T31470 263-264 -RRB- denotes )
T31471 278-286 VBN denotes inserted
T31472 273-277 VBD denotes were
T31473 287-291 IN denotes into
T31474 292-298 NN denotes pcDNA3
T31475 299-305 NN denotes vector
T31476 305-307 , denotes ,
T31477 307-319 RB denotes respectively
T31478 319-320 . denotes .
T31479 320-392 sentence denotes (B) The constructs indicated above were transfected into HEK293T cells.
T31480 321-322 -LRB- denotes (
T31481 322-323 LS denotes B
T31482 361-372 VBN denotes transfected
T31483 323-324 -RRB- denotes )
T31484 325-328 DT denotes The
T31485 329-339 NNS denotes constructs
T31486 340-349 VBN denotes indicated
T31487 350-355 RB denotes above
T31488 356-360 VBD denotes were
T31489 373-377 IN denotes into
T31490 378-385 NN denotes HEK293T
T31491 386-391 NNS denotes cells
T31492 391-392 . denotes .
T31493 392-484 sentence denotes Each lane was co-immunoprecipitated by anti-Flag antibody and detected by anti-HA antibody.
T31494 393-397 DT denotes Each
T31495 398-402 NN denotes lane
T31496 407-428 VBN denotes co-immunoprecipitated
T31497 403-406 VBD denotes was
T31498 429-431 IN denotes by
T31499 432-441 JJ denotes anti-Flag
T31500 442-450 NN denotes antibody
T31501 451-454 CC denotes and
T31502 455-463 VBN denotes detected
T31503 464-466 IN denotes by
T31504 467-474 JJ denotes anti-HA
T31505 475-483 NN denotes antibody
T31506 483-484 . denotes .
T31507 484-537 sentence denotes Input protein lysates are shown in the lower panels.
T31508 485-490 NN denotes Input
T31509 499-506 NNS denotes lysates
T31510 491-498 NN denotes protein
T31511 511-516 VBN denotes shown
T31512 507-510 VBP denotes are
T31513 517-519 IN denotes in
T31514 520-523 DT denotes the
T31515 530-536 NNS denotes panels
T31516 524-529 JJ denotes lower
T31517 536-537 . denotes .
T31518 537-659 sentence denotes (C) Flag-tagged two site-directed mr-s mutants, Flag-W404A and Flag-G453A were generated and co-transfected with full-HA.
T31519 538-539 -LRB- denotes (
T31520 539-540 LS denotes C
T31521 617-626 VBN denotes generated
T31522 540-541 -RRB- denotes )
T31523 542-546 NN denotes Flag
T31524 547-553 VBN denotes tagged
T31525 546-547 HYPH denotes -
T31526 577-584 NNS denotes mutants
T31527 554-557 CD denotes two
T31528 558-562 NN denotes site
T31529 563-571 VBN denotes directed
T31530 562-563 HYPH denotes -
T31531 572-574 NN denotes mr
T31532 575-576 NN denotes s
T31533 574-575 HYPH denotes -
T31534 584-586 , denotes ,
T31535 586-590 NN denotes Flag
T31536 591-596 NN denotes W404A
T31537 590-591 HYPH denotes -
T31538 597-600 CC denotes and
T31539 601-605 NN denotes Flag
T31540 606-611 NN denotes G453A
T31541 605-606 HYPH denotes -
T31542 612-616 VBD denotes were
T31543 627-630 CC denotes and
T31544 631-645 VBN denotes co-transfected
T31545 646-650 IN denotes with
T31546 651-655 JJ denotes full
T31547 656-658 NN denotes HA
T31548 655-656 HYPH denotes -
T31549 658-659 . denotes .
T31550 659-751 sentence denotes Each lane was co-immunoprecipitated by anti-HA antibody and detected by anti-Flag antibody.
T31551 660-664 DT denotes Each
T31552 665-669 NN denotes lane
T31553 674-695 VBN denotes co-immunoprecipitated
T31554 670-673 VBD denotes was
T31555 696-698 IN denotes by
T31556 699-706 JJ denotes anti-HA
T31557 707-715 NN denotes antibody
T31558 716-719 CC denotes and
T31559 720-728 VBN denotes detected
T31560 729-731 IN denotes by
T31561 732-741 JJ denotes anti-Flag
T31562 742-750 NN denotes antibody
T31563 750-751 . denotes .
T13281 909-913 NN denotes Fig.
T13282 914-916 NN denotes 1B
T13283 916-918 , denotes ,
T13246 0-926 sentence denotes Figure 5 The mr-s protein can self-associate in mammalian cells. (A) Schematic drawing of the constructs used for immunoprecipitation assay. HA-tagged or Flag-tagged full-length (amino acids 1 to 542), ΔSAM (amino acids 1 to 400) and SAM (amino acids 401 to 542) regions were inserted into pcDNA3 vector, respectively. (B) The constructs indicated above were transfected into HEK293T cells. Each lane was co-immunoprecipitated by anti-Flag antibody and detected by anti-HA antibody. Input protein lysates are shown in the lower panels. (C) Flag-tagged two site-directed mr-s mutants, Flag-W404A and Flag-G453A were generated and co-transfected with full-HA. Each lane was co-immunoprecipitated by anti-HA antibody and detected by anti-Flag antibody. To investigate whether the mr-s protein self-associates mainly through the SAM domain, two site-directed mutations were generated in the SAM domain of mr-s (Fig. 1B, arrows).
T13247 752-754 TO denotes To
T13248 755-766 VB denotes investigate
T13249 872-881 VBN denotes generated
T13250 767-774 IN denotes whether
T13251 797-807 VBZ denotes associates
T13252 775-778 DT denotes the
T13253 784-791 NN denotes protein
T13254 779-781 NN denotes mr
T13255 782-783 NN denotes s
T13256 781-782 HYPH denotes -
T13257 792-796 NN denotes self
T13258 796-797 HYPH denotes -
T13259 808-814 RB denotes mainly
T13260 815-822 IN denotes through
T13261 823-826 DT denotes the
T13262 831-837 NN denotes domain
T13263 827-830 NN denotes SAM
T13264 837-839 , denotes ,
T13265 839-842 CD denotes two
T13266 857-866 NNS denotes mutations
T13267 843-847 NN denotes site
T13268 848-856 VBN denotes directed
T13269 847-848 HYPH denotes -
T13270 867-871 VBD denotes were
T13271 882-884 IN denotes in
T13272 885-888 DT denotes the
T13273 893-899 NN denotes domain
T13274 889-892 NN denotes SAM
T13275 900-902 IN denotes of
T13276 903-905 NN denotes mr
T13277 906-907 NN denotes s
T13278 905-906 HYPH denotes -
T13279 908-909 -LRB- denotes (
T13280 918-924 NNS denotes arrows
R3591 T13277 T13275 pobj s,of
R3593 T13278 T13277 punct -,s
R3594 T13279 T13280 punct (,arrows
R3595 T13280 T13249 parataxis arrows,generated
R3596 T13281 T13282 compound Fig.,1B
R3597 T13282 T13280 dep 1B,arrows
R3599 T13283 T13280 punct ", ",arrows
R3602 T13284 T13280 punct ),arrows
R3604 T13285 T13249 punct .,generated
R8967 T31407 T31408 det The,protein
R8968 T31408 T31412 nsubj protein,associate
R8969 T31409 T31410 compound mr,s
R8970 T31410 T31408 compound s,protein
R8971 T31411 T31410 punct -,s
R8972 T31413 T31412 aux can,associate
R8973 T31414 T31412 dep self,associate
R8974 T31415 T31412 punct -,associate
R8975 T31416 T31412 prep in,associate
R8976 T31417 T31418 amod mammalian,cells
R8977 T31418 T31416 pobj cells,in
R8978 T31419 T31412 punct .,associate
R8979 T31421 T31422 punct (,A
R8980 T31422 T31423 meta A,drawing
R8981 T31424 T31422 punct ),A
R8982 T31425 T31423 amod Schematic,drawing
R8983 T31426 T31423 prep of,drawing
R8984 T31427 T31428 det the,constructs
R8985 T31428 T31426 pobj constructs,of
R8986 T31429 T31428 acl used,constructs
R8987 T31430 T31429 prep for,used
R8988 T31431 T31432 compound immunoprecipitation,assay
R8989 T31432 T31430 pobj assay,for
R8990 T31433 T31423 punct .,drawing
R8991 T31435 T31436 npadvmod HA,tagged
R8992 T31436 T31438 amod tagged,regions
R8993 T31437 T31436 punct -,tagged
R8994 T31438 T31471 nsubjpass regions,inserted
R8995 T31439 T31436 cc or,tagged
R8996 T31440 T31441 npadvmod Flag,tagged
R8997 T31441 T31436 conj tagged,tagged
R8998 T31442 T31441 punct -,tagged
R8999 T31443 T31444 amod full,length
R9000 T31444 T31438 nmod length,regions
R9001 T31445 T31444 punct -,length
R9002 T31446 T31447 punct (,1
R9003 T31447 T31444 parataxis 1,length
R9004 T31448 T31447 nmod amino,1
R9005 T31449 T31447 nmod acids,1
R9006 T31450 T31447 prep to,1
R9007 T31451 T31450 pobj 542,to
R9008 T31452 T31447 punct ),1
R9009 T31453 T31438 punct ", ",regions
R9010 T31454 T31438 nmod ΔSAM,regions
R9011 T31455 T31456 punct (,1
R9012 T31456 T31454 parataxis 1,ΔSAM
R9013 T31457 T31456 nmod amino,1
R9014 T31458 T31456 nmod acids,1
R9015 T31459 T31456 prep to,1
R9016 T31460 T31459 pobj 400,to
R9017 T31461 T31456 punct ),1
R9018 T31462 T31454 cc and,ΔSAM
R9019 T31463 T31454 conj SAM,ΔSAM
R9020 T31464 T31465 punct (,401
R9021 T31465 T31463 parataxis 401,SAM
R9022 T31466 T31465 nmod amino,401
R9023 T31467 T31465 nmod acids,401
R9024 T31468 T31465 prep to,401
R9025 T31469 T31468 pobj 542,to
R9026 T31470 T31465 punct ),401
R9027 T31472 T31471 auxpass were,inserted
R9028 T31473 T31471 prep into,inserted
R9029 T31474 T31475 compound pcDNA3,vector
R9030 T31475 T31473 pobj vector,into
R9031 T31476 T31471 punct ", ",inserted
R9032 T31477 T31471 advmod respectively,inserted
R9033 T31478 T31471 punct .,inserted
R9034 T31480 T31481 punct (,B
R9035 T31481 T31482 meta B,transfected
R9036 T31483 T31481 punct ),B
R9037 T31484 T31485 det The,constructs
R9038 T31485 T31482 nsubjpass constructs,transfected
R9039 T31486 T31485 acl indicated,constructs
R9040 T31487 T31486 advmod above,indicated
R9041 T31488 T31482 auxpass were,transfected
R9042 T31489 T31482 prep into,transfected
R9043 T31490 T31491 compound HEK293T,cells
R9044 T31491 T31489 pobj cells,into
R9045 T31492 T31482 punct .,transfected
R9046 T31494 T31495 det Each,lane
R9047 T31495 T31496 nsubjpass lane,co-immunoprecipitated
R9048 T31497 T31496 auxpass was,co-immunoprecipitated
R9049 T31498 T31496 agent by,co-immunoprecipitated
R9050 T31499 T31500 amod anti-Flag,antibody
R9051 T31500 T31498 pobj antibody,by
R9052 T31501 T31496 cc and,co-immunoprecipitated
R9053 T31502 T31496 conj detected,co-immunoprecipitated
R9054 T31503 T31502 agent by,detected
R9055 T31504 T31505 amod anti-HA,antibody
R9056 T31505 T31503 pobj antibody,by
R9057 T31506 T31496 punct .,co-immunoprecipitated
R9058 T31508 T31509 compound Input,lysates
R9059 T31509 T31511 nsubjpass lysates,shown
R9060 T31510 T31509 compound protein,lysates
R9061 T31512 T31511 auxpass are,shown
R9062 T31513 T31511 prep in,shown
R9063 T31514 T31515 det the,panels
R9064 T31515 T31513 pobj panels,in
R9065 T31516 T31515 amod lower,panels
R9066 T31517 T31511 punct .,shown
R9067 T31519 T31520 punct (,C
R9068 T31520 T31521 meta C,generated
R9069 T31522 T31520 punct ),C
R9070 T31523 T31524 npadvmod Flag,tagged
R9071 T31524 T31526 amod tagged,mutants
R9072 T31525 T31524 punct -,tagged
R9073 T31526 T31521 nsubjpass mutants,generated
R9074 T31527 T31528 nummod two,site
R9075 T31528 T31529 npadvmod site,directed
R9076 T31529 T31526 amod directed,mutants
R9077 T31530 T31529 punct -,directed
R9078 T31531 T31532 compound mr,s
R9079 T31532 T31526 compound s,mutants
R9080 T31533 T31532 punct -,s
R9081 T31534 T31526 punct ", ",mutants
R9082 T31535 T31536 compound Flag,W404A
R9083 T31536 T31526 appos W404A,mutants
R9084 T31537 T31536 punct -,W404A
R9085 T31538 T31536 cc and,W404A
R9086 T31539 T31540 compound Flag,G453A
R9087 T31540 T31536 conj G453A,W404A
R9088 T31541 T31540 punct -,G453A
R9089 T31542 T31521 auxpass were,generated
R9090 T31543 T31521 cc and,generated
R9091 T31544 T31521 conj co-transfected,generated
R9092 T31545 T31544 prep with,co-transfected
R9093 T31546 T31547 amod full,HA
R9094 T31547 T31545 pobj HA,with
R9095 T31548 T31547 punct -,HA
R9096 T31549 T31521 punct .,generated
R9097 T31551 T31552 det Each,lane
R9098 T31552 T31553 nsubjpass lane,co-immunoprecipitated
R9099 T31554 T31553 auxpass was,co-immunoprecipitated
R9100 T31555 T31553 agent by,co-immunoprecipitated
R9101 T31556 T31557 amod anti-HA,antibody
R9102 T31557 T31555 pobj antibody,by
R9103 T31558 T31553 cc and,co-immunoprecipitated
R9104 T31559 T31553 conj detected,co-immunoprecipitated
R9105 T31560 T31559 agent by,detected
R9106 T31561 T31562 amod anti-Flag,antibody
R9107 T31562 T31560 pobj antibody,by
R9108 T31563 T31553 punct .,co-immunoprecipitated
R3549 T13247 T13248 aux To,investigate
R3551 T13248 T13249 advcl investigate,generated
R3553 T13250 T13251 mark whether,associates
R3554 T13251 T13248 ccomp associates,investigate
R3556 T13252 T13253 det the,protein
R3557 T13253 T13251 nsubj protein,associates
R3558 T13254 T13255 compound mr,s
R3560 T13255 T13253 compound s,protein
R3561 T13256 T13255 punct -,s
R3563 T13257 T13251 dep self,associates
R3564 T13258 T13251 punct -,associates
R3565 T13259 T13251 advmod mainly,associates
R3567 T13260 T13251 prep through,associates
R3568 T13261 T13262 det the,domain
R3569 T13262 T13260 pobj domain,through
R3571 T13263 T13262 compound SAM,domain
R3572 T13264 T13249 punct ", ",generated
R3574 T13265 T13266 nummod two,mutations
R3575 T13266 T13249 nsubjpass mutations,generated
R3576 T13267 T13268 npadvmod site,directed
R3578 T13268 T13266 amod directed,mutations
R3579 T13269 T13268 punct -,directed
R3580 T13270 T13249 auxpass were,generated
R3582 T13271 T13249 prep in,generated
R3583 T13272 T13273 det the,domain
R3584 T13273 T13271 pobj domain,in
R3586 T13274 T13273 compound SAM,domain
R3587 T13275 T13273 prep of,domain
R3588 T13276 T13277 compound mr,s