> top > docs > PMC:1435744 > spans > 13027-13862 > annotations

PMC:1435744 / 13027-13862 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7323 36-49 CL:0000210 denotes photoreceptor
T7324 59-64 SO_EXT:0000704 denotes genes
T7325 74-83 GO:0010467 denotes expressed
T7326 91-103 UBERON:0001905 denotes pineal gland
T7327 126-136 GO:0010467 denotes expression
T7328 140-144 PR_EXT:000014441 denotes mr-s
T7329 145-156 SO_EXT:0000673 denotes transcripts
T7330 170-176 UBERON:0000922 denotes embryo
T7331 178-188 UBERON:0000468 denotes whole body
T7332 190-196 UBERON:0000966 denotes retina
T7333 198-210 UBERON:0001905 denotes pineal gland
T7334 212-217 UBERON:0000955 denotes brain
T7335 219-224 UBERON:0002107 denotes liver
T7336 235-241 UBERON:0000062 denotes organs
T7337 263-265 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T7338 317-326 _FRAGMENT denotes fragments
T7339 366-375 SO_EXT:0000997 denotes for genes
T7340 334-336 SO_EXT:0000028 denotes bp
T7341 345-347 SO_EXT:0000028 denotes bp
T7342 353-359 SO_EXT:0000112 denotes primer
T7343 376-384 SO_EXT:sequence_coding_function denotes encoding
T7344 385-390 NCBITaxon:10088 denotes mouse
T7345 391-395 PR_EXT:000014441 denotes mr-s
T7346 400-405 GO_PR_EXT:glyceraldehyde_3_phosphate_dehydrogenase denotes G3PDH
T7347 434-440 UBERON:0000922 denotes embryo
T7348 448-458 UBERON:0000468 denotes whole body
T7349 475-478 UBERON:0000970 denotes eye
T7350 484-488 PR_EXT:000014441 denotes mr-s
T7351 540-544 PR_EXT:000014441 denotes mr-s
T7352 548-557 GO:0010467 denotes expressed
T7353 572-577 UBERON:0007023 denotes adult
T7354 578-590 UBERON:0001905 denotes pineal gland
T7355 606-611 UBERON:0007023 denotes adult
T7356 612-617 UBERON:0000955 denotes brain
T7357 619-624 UBERON:0002107 denotes liver
T7358 643-649 UBERON:0000062 denotes organs
T7359 655-657 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T7360 680-684 PR_EXT:000014441 denotes mr-s
T7361 753-757 PR_EXT:000014441 denotes mr-s
T7362 775-784 GO:0010467 denotes expressed
T7363 799-813 CL:0000210 denotes photoreceptors
T7364 822-834 UBERON:0001905 denotes pineal gland
R1701 T7339 T7338 _lexicallyChainedTo for genes,fragments

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7210 145-156 SO:0000673 denotes transcripts
T7211 170-176 UBERON:0000922 denotes embryo
T7212 178-188 UBERON:0000468 denotes whole body
T7213 190-196 UBERON:0000966 denotes retina
T7214 198-210 UBERON:0001905 denotes pineal gland
T7215 212-217 UBERON:0000955 denotes brain
T7216 219-224 UBERON:0002107 denotes liver
T7217 235-241 UBERON:0000062 denotes organs
T7218 317-326 _FRAGMENT denotes fragments
T7219 366-375 SO:0000997 denotes for genes
T7220 334-336 SO:0000028 denotes bp
T7221 345-347 SO:0000028 denotes bp
T7222 353-359 SO:0000112 denotes primer
T7223 385-390 NCBITaxon:10088 denotes mouse
T7224 391-395 PR:000014441 denotes mr-s
T7225 434-440 UBERON:0000922 denotes embryo
T7226 448-458 UBERON:0000468 denotes whole body
T7227 475-478 UBERON:0000970 denotes eye
T7228 484-488 PR:000014441 denotes mr-s
T7229 540-544 PR:000014441 denotes mr-s
T7230 548-557 GO:0010467 denotes expressed
T7231 572-577 UBERON:0007023 denotes adult
T7232 578-590 UBERON:0001905 denotes pineal gland
T7233 606-611 UBERON:0007023 denotes adult
T7234 612-617 UBERON:0000955 denotes brain
T7235 619-624 UBERON:0002107 denotes liver
T7236 643-649 UBERON:0000062 denotes organs
T7237 680-684 PR:000014441 denotes mr-s
T7238 753-757 PR:000014441 denotes mr-s
T7239 775-784 GO:0010467 denotes expressed
T7240 799-813 CL:0000210 denotes photoreceptors
T7241 822-834 UBERON:0001905 denotes pineal gland
T7204 36-49 CL:0000210 denotes photoreceptor
T7205 59-64 SO:0000704 denotes genes
T7206 74-83 GO:0010467 denotes expressed
T7207 91-103 UBERON:0001905 denotes pineal gland
T7208 126-136 GO:0010467 denotes expression
T7209 140-144 PR:000014441 denotes mr-s
R1700 T7219 T7218 _lexicallyChainedTo for genes,fragments

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7789 0-8 JJ denotes Previous
T7790 9-16 NNS denotes reports
T7791 17-25 VBD denotes revealed
T7792 26-30 IN denotes that
T7793 74-83 VBN denotes expressed
T7794 31-35 JJ denotes many
T7795 59-64 NNS denotes genes
T7796 36-49 NN denotes photoreceptor
T7797 50-58 JJ denotes specific
T7798 49-50 HYPH denotes -
T7799 65-68 VBP denotes are
T7800 69-73 RB denotes also
T7801 84-86 IN denotes in
T7802 87-90 DT denotes the
T7803 98-103 NN denotes gland
T7804 91-97 JJ denotes pineal
T7805 104-105 -LRB- denotes [
T7806 105-107 CD denotes 38
T7807 107-108 -RRB- denotes ]
T7808 108-109 . denotes .
T7809 109-299 sentence denotes We examined the expression of mr-s transcripts in the whole embryo, whole body, retina, pineal gland, brain, liver and other organs at various stages by RT-PCR (Fig. 2I and data not shown).
T7810 110-112 PRP denotes We
T7811 113-121 VBD denotes examined
T7812 122-125 DT denotes the
T7813 126-136 NN denotes expression
T7814 137-139 IN denotes of
T7815 140-142 NN denotes mr
T7816 143-144 NN denotes s
T7817 142-143 HYPH denotes -
T7818 145-156 NNS denotes transcripts
T7819 157-159 IN denotes in
T7820 160-163 DT denotes the
T7821 170-176 NN denotes embryo
T7822 164-169 JJ denotes whole
T7823 176-178 , denotes ,
T7824 178-183 JJ denotes whole
T7825 184-188 NN denotes body
T7826 188-190 , denotes ,
T7827 190-196 NN denotes retina
T7828 196-198 , denotes ,
T7829 198-204 JJ denotes pineal
T7830 205-210 NN denotes gland
T7831 210-212 , denotes ,
T7832 212-217 NN denotes brain
T7833 217-219 , denotes ,
T7834 219-224 NN denotes liver
T7835 225-228 CC denotes and
T7836 229-234 JJ denotes other
T7837 235-241 NNS denotes organs
T7838 242-244 IN denotes at
T7839 245-252 JJ denotes various
T7840 253-259 NNS denotes stages
T7841 260-262 IN denotes by
T7842 263-265 NN denotes RT
T7843 266-269 NN denotes PCR
T7844 265-266 HYPH denotes -
T7845 270-271 -LRB- denotes (
T7846 276-278 NN denotes 2I
T7847 271-275 NN denotes Fig.
T7848 279-282 CC denotes and
T7849 283-287 NNS denotes data
T7850 292-297 VBN denotes shown
T7851 288-291 RB denotes not
T7852 297-298 -RRB- denotes )
T7853 298-299 . denotes .
T7854 299-420 sentence denotes We amplified PCR fragments of 292 bp and 452 bp with primer pairs for genes encoding mouse mr-s and G3PDH, respectively.
T7855 300-302 PRP denotes We
T7856 303-312 VBD denotes amplified
T7857 313-316 NN denotes PCR
T7858 317-326 NNS denotes fragments
T7859 327-329 IN denotes of
T7860 330-333 CD denotes 292
T7861 334-336 NN denotes bp
T7862 337-340 CC denotes and
T7864 345-347 NN denotes bp
T7865 348-352 IN denotes with
T7866 353-359 NN denotes primer
T7867 360-365 NNS denotes pairs
T7868 366-369 IN denotes for
T7869 370-375 NNS denotes genes
T7870 376-384 VBG denotes encoding
T7871 385-390 NN denotes mouse
T7872 394-395 NN denotes s
T7873 391-393 NN denotes mr
T7874 393-394 HYPH denotes -
T7875 396-399 CC denotes and
T7876 400-405 NN denotes G3PDH
T7877 405-407 , denotes ,
T7878 407-419 RB denotes respectively
T7879 419-420 . denotes .
T7880 420-509 sentence denotes In E13 whole embryo and P0 whole body (except for the eye), no mr-s signal was detected.
T7881 421-423 IN denotes In
T7882 500-508 VBN denotes detected
T7883 424-427 NN denotes E13
T7884 434-440 NN denotes embryo
T7885 428-433 JJ denotes whole
T7886 441-444 CC denotes and
T7887 445-447 NN denotes P0
T7888 454-458 NN denotes body
T7889 448-453 JJ denotes whole
T7890 459-460 -LRB- denotes (
T7891 460-466 IN denotes except
T7892 467-470 IN denotes for
T7893 471-474 DT denotes the
T7894 475-478 NN denotes eye
T7895 478-479 -RRB- denotes )
T7896 479-481 , denotes ,
T7897 481-483 DT denotes no
T7898 489-495 NN denotes signal
T7899 484-486 NN denotes mr
T7900 487-488 NN denotes s
T7901 486-487 HYPH denotes -
T7902 496-499 VBD denotes was
T7903 508-509 . denotes .
T7904 509-591 sentence denotes As expected, we observed that mr-s is expressed in the P7 and adult pineal gland.
T7905 510-512 IN denotes As
T7906 513-521 VBN denotes expected
T7907 526-534 VBD denotes observed
T7908 521-523 , denotes ,
T7909 523-525 PRP denotes we
T7910 535-539 IN denotes that
T7911 548-557 VBN denotes expressed
T7912 540-542 NN denotes mr
T7913 543-544 NN denotes s
T7914 542-543 HYPH denotes -
T7915 545-547 VBZ denotes is
T7916 558-560 IN denotes in
T7917 561-564 DT denotes the
T7918 585-590 NN denotes gland
T7919 565-567 NN denotes P7
T7920 568-571 CC denotes and
T7921 572-577 JJ denotes adult
T7922 578-584 JJ denotes pineal
T7923 590-591 . denotes .
T7924 591-731 sentence denotes In the P7 and adult brain, liver and several other organs, the RT-PCR amplified band of mr-s was not detected (Fig. 2I and data not shown).
T7925 592-594 IN denotes In
T7926 693-701 VBN denotes detected
T7927 595-598 DT denotes the
T7928 612-617 NN denotes brain
T7929 599-601 NN denotes P7
T7930 602-605 CC denotes and
T7931 606-611 JJ denotes adult
T7932 617-619 , denotes ,
T7933 619-624 NN denotes liver
T7934 625-628 CC denotes and
T7935 629-636 JJ denotes several
T7936 643-649 NNS denotes organs
T7937 637-642 JJ denotes other
T7938 649-651 , denotes ,
T7939 651-654 DT denotes the
T7940 672-676 NN denotes band
T7941 655-657 NN denotes RT
T7942 658-661 NN denotes PCR
T7943 657-658 HYPH denotes -
T7944 662-671 VBN denotes amplified
T7945 677-679 IN denotes of
T7946 680-682 NN denotes mr
T7947 683-684 NN denotes s
T7948 682-683 HYPH denotes -
T7949 685-688 VBD denotes was
T7950 689-692 RB denotes not
T7951 702-703 -LRB- denotes (
T7952 708-710 NN denotes 2I
T7953 703-707 NN denotes Fig.
T7954 711-714 CC denotes and
T7955 715-719 NNS denotes data
T7956 724-729 VBN denotes shown
T7957 720-723 RB denotes not
T7958 729-730 -RRB- denotes )
T7959 730-731 . denotes .
T7960 731-835 sentence denotes Our data showed that mr-s is predominantly expressed in developing photoreceptors and the pineal gland.
T7961 732-735 PRP$ denotes Our
T7962 736-740 NNS denotes data
T7963 741-747 VBD denotes showed
T7964 748-752 IN denotes that
T7965 775-784 VBN denotes expressed
T7966 753-755 NN denotes mr
T7967 756-757 NN denotes s
T7968 755-756 HYPH denotes -
T7969 758-760 VBZ denotes is
T7970 761-774 RB denotes predominantly
T7971 785-787 IN denotes in
T7972 788-798 VBG denotes developing
T7973 799-813 NNS denotes photoreceptors
T7974 814-817 CC denotes and
T7975 818-821 DT denotes the
T7976 829-834 NN denotes gland
T7977 822-828 JJ denotes pineal
T7978 834-835 . denotes .
T7863 341-344 CD denotes 452
R2066 T7789 T7790 amod Previous,reports
R2067 T7790 T7791 nsubj reports,revealed
R2068 T7792 T7793 mark that,expressed
R2069 T7793 T7791 ccomp expressed,revealed
R2070 T7794 T7795 amod many,genes
R2071 T7795 T7793 nsubjpass genes,expressed
R2072 T7796 T7797 npadvmod photoreceptor,specific
R2073 T7797 T7795 amod specific,genes
R2074 T7798 T7797 punct -,specific
R2075 T7799 T7793 auxpass are,expressed
R2076 T7800 T7793 advmod also,expressed
R2077 T7801 T7793 prep in,expressed
R2078 T7802 T7803 det the,gland
R2079 T7803 T7801 pobj gland,in
R2080 T7804 T7803 amod pineal,gland
R2081 T7805 T7806 punct [,38
R2082 T7806 T7791 parataxis 38,revealed
R2083 T7807 T7806 punct ],38
R2084 T7808 T7791 punct .,revealed
R2085 T7810 T7811 nsubj We,examined
R2086 T7812 T7813 det the,expression
R2087 T7813 T7811 dobj expression,examined
R2088 T7814 T7813 prep of,expression
R2089 T7815 T7816 compound mr,s
R2090 T7816 T7818 compound s,transcripts
R2091 T7817 T7816 punct -,s
R2092 T7818 T7814 pobj transcripts,of
R2093 T7819 T7813 prep in,expression
R2094 T7820 T7821 det the,embryo
R2095 T7821 T7819 pobj embryo,in
R2096 T7822 T7821 amod whole,embryo
R2097 T7823 T7821 punct ", ",embryo
R2098 T7824 T7825 amod whole,body
R2099 T7825 T7821 conj body,embryo
R2100 T7826 T7825 punct ", ",body
R2101 T7827 T7825 conj retina,body
R2102 T7828 T7827 punct ", ",retina
R2103 T7829 T7830 amod pineal,gland
R2104 T7830 T7827 conj gland,retina
R2105 T7831 T7830 punct ", ",gland
R2106 T7832 T7830 conj brain,gland
R2107 T7833 T7832 punct ", ",brain
R2108 T7834 T7832 conj liver,brain
R2109 T7835 T7834 cc and,liver
R2110 T7836 T7837 amod other,organs
R2111 T7837 T7834 conj organs,liver
R2112 T7838 T7811 prep at,examined
R2113 T7839 T7840 amod various,stages
R2114 T7840 T7838 pobj stages,at
R2115 T7841 T7811 prep by,examined
R2116 T7842 T7843 compound RT,PCR
R2117 T7843 T7841 pobj PCR,by
R2118 T7844 T7843 punct -,PCR
R2119 T7845 T7846 punct (,2I
R2120 T7846 T7811 parataxis 2I,examined
R2121 T7847 T7846 compound Fig.,2I
R2122 T7848 T7846 cc and,2I
R2123 T7849 T7850 nsubj data,shown
R2124 T7850 T7846 conj shown,2I
R2125 T7851 T7850 neg not,shown
R2126 T7852 T7846 punct ),2I
R2127 T7853 T7811 punct .,examined
R2128 T7855 T7856 nsubj We,amplified
R2129 T7857 T7858 compound PCR,fragments
R2130 T7858 T7856 dobj fragments,amplified
R2131 T7859 T7858 prep of,fragments
R2132 T7860 T7861 nummod 292,bp
R2133 T7861 T7859 pobj bp,of
R2134 T7862 T7861 cc and,bp
R2135 T7863 T7864 nummod 452,bp
R2136 T7864 T7861 conj bp,bp
R2137 T7865 T7856 prep with,amplified
R2138 T7866 T7867 compound primer,pairs
R2139 T7867 T7865 pobj pairs,with
R2140 T7868 T7867 prep for,pairs
R2141 T7869 T7868 pobj genes,for
R2142 T7870 T7869 acl encoding,genes
R2143 T7871 T7872 compound mouse,s
R2144 T7872 T7870 dobj s,encoding
R2145 T7873 T7872 compound mr,s
R2146 T7874 T7872 punct -,s
R2147 T7875 T7872 cc and,s
R2148 T7876 T7872 conj G3PDH,s
R2149 T7877 T7870 punct ", ",encoding
R2150 T7878 T7870 advmod respectively,encoding
R2151 T7879 T7856 punct .,amplified
R2152 T7881 T7882 prep In,detected
R2153 T7883 T7884 nmod E13,embryo
R2154 T7884 T7881 pobj embryo,In
R2155 T7885 T7884 amod whole,embryo
R2156 T7886 T7884 cc and,embryo
R2157 T7887 T7888 nmod P0,body
R2158 T7888 T7884 conj body,embryo
R2159 T7889 T7888 amod whole,body
R2160 T7890 T7888 punct (,body
R2161 T7891 T7888 prep except,body
R2162 T7892 T7891 prep for,except
R2163 T7893 T7894 det the,eye
R2164 T7894 T7892 pobj eye,for
R2165 T7895 T7882 punct ),detected
R2166 T7896 T7882 punct ", ",detected
R2167 T7897 T7898 det no,signal
R2168 T7898 T7882 nsubjpass signal,detected
R2169 T7899 T7900 compound mr,s
R2170 T7900 T7898 compound s,signal
R2171 T7901 T7900 punct -,s
R2172 T7902 T7882 auxpass was,detected
R2173 T7903 T7882 punct .,detected
R2174 T7905 T7906 mark As,expected
R2175 T7906 T7907 advcl expected,observed
R2176 T7908 T7907 punct ", ",observed
R2177 T7909 T7907 nsubj we,observed
R2178 T7910 T7911 mark that,expressed
R2179 T7911 T7907 ccomp expressed,observed
R2180 T7912 T7913 compound mr,s
R2181 T7913 T7911 nsubjpass s,expressed
R2182 T7914 T7913 punct -,s
R2183 T7915 T7911 auxpass is,expressed
R2184 T7916 T7911 prep in,expressed
R2185 T7917 T7918 det the,gland
R2186 T7918 T7916 pobj gland,in
R2187 T7919 T7918 nmod P7,gland
R2188 T7920 T7919 cc and,P7
R2189 T7921 T7919 conj adult,P7
R2190 T7922 T7918 amod pineal,gland
R2191 T7923 T7907 punct .,observed
R2192 T7925 T7926 prep In,detected
R2193 T7927 T7928 det the,brain
R2194 T7928 T7925 pobj brain,In
R2195 T7929 T7928 nmod P7,brain
R2196 T7930 T7929 cc and,P7
R2197 T7931 T7929 conj adult,P7
R2198 T7932 T7928 punct ", ",brain
R2199 T7933 T7928 conj liver,brain
R2200 T7934 T7933 cc and,liver
R2201 T7935 T7936 amod several,organs
R2202 T7936 T7933 conj organs,liver
R2203 T7937 T7936 amod other,organs
R2204 T7938 T7926 punct ", ",detected
R2205 T7939 T7940 det the,band
R2206 T7940 T7926 nsubjpass band,detected
R2207 T7941 T7942 compound RT,PCR
R2208 T7942 T7944 npadvmod PCR,amplified
R2209 T7943 T7942 punct -,PCR
R2210 T7944 T7940 amod amplified,band
R2211 T7945 T7940 prep of,band
R2212 T7946 T7947 compound mr,s
R2213 T7947 T7945 pobj s,of
R2214 T7948 T7947 punct -,s
R2215 T7949 T7926 auxpass was,detected
R2216 T7950 T7926 neg not,detected
R2217 T7951 T7952 punct (,2I
R2218 T7952 T7926 parataxis 2I,detected
R2219 T7953 T7952 compound Fig.,2I
R2220 T7954 T7952 cc and,2I
R2221 T7955 T7956 nsubj data,shown
R2222 T7956 T7952 conj shown,2I
R2223 T7957 T7956 neg not,shown
R2224 T7958 T7952 punct ),2I
R2225 T7959 T7926 punct .,detected
R2226 T7961 T7962 poss Our,data
R2227 T7962 T7963 nsubj data,showed
R2228 T7964 T7965 mark that,expressed
R2229 T7965 T7963 ccomp expressed,showed
R2230 T7966 T7967 compound mr,s
R2231 T7967 T7965 nsubjpass s,expressed
R2232 T7968 T7967 punct -,s
R2233 T7969 T7965 auxpass is,expressed
R2234 T7970 T7965 advmod predominantly,expressed
R2235 T7971 T7965 prep in,expressed
R2236 T7972 T7973 amod developing,photoreceptors
R2237 T7973 T7971 pobj photoreceptors,in
R2238 T7974 T7973 cc and,photoreceptors
R2239 T7975 T7976 det the,gland
R2240 T7976 T7973 conj gland,photoreceptors
R2241 T7977 T7976 amod pineal,gland
R2242 T7978 T7963 punct .,showed