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PMC:1420271 / 5869-6769 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3826 39-43 PR:000006847 denotes ESG1
T3827 44-48 SO:0000704 denotes gene
T3828 66-75 NCBITaxon:2 denotes bacterial
T3829 66-97 SO:0000153 denotes bacterial artificial chromosome
T3830 99-102 SO:0000153 denotes BAC
T3831 126-132 SO:0000112 denotes primer
T3832 172-176 SO:0000704 denotes gene
T3833 186-197 SO:0000336 denotes pseudogenes
T3834 244-247 SO:0000153 denotes BAC
T3835 380-384 PR:000006847 denotes ESG1
T3836 427-434 SO:0000188 denotes introns
T3837 456-462 SO:0000188 denotes intron
T3838 539-560 SO:0001421 denotes exon-intron junctions
T3839 571-589 SO:0001416 denotes 5' flanking region
T3840 628-636 SO:0000167 denotes promoter
T3841 637-645 SO:0000165 denotes enhancer
T3842 705-713 CL:0002322 denotes ES cells
T3843 726-739 CL:0002371 denotes somatic cells
T3844 836-849 CHEBI:26536 denotes retinoic acid
T3845 890-894 PR:000006847 denotes ESG1
T3846 895-899 SO:0000704 denotes gene

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3935 10-13 CHEBI_SO_EXT:DNA denotes DNA
T3936 39-43 PR_EXT:000006847 denotes ESG1
T3937 44-48 SO_EXT:0000704 denotes gene
T3938 66-75 NCBITaxon:2 denotes bacterial
T3939 66-97 SO_EXT:0000153 denotes bacterial artificial chromosome
T3940 87-97 GO_SO_EXT:chromosome denotes chromosome
T3941 99-102 SO_EXT:0000153 denotes BAC
T3942 104-107 CHEBI_SO_EXT:DNA denotes DNA
T3943 126-132 SO_EXT:0000112 denotes primer
T3944 172-176 SO_EXT:0000704 denotes gene
T3945 186-197 SO_EXT:0000336 denotes pseudogenes
T3946 244-247 SO_EXT:0000153 denotes BAC
T3947 248-254 SO_EXT:sequence_cloned_entity denotes clones
T3948 318-324 SO_EXT:sequence_cloned_entity denotes clones
T3949 337-345 SO_EXT:biological_sequence denotes sequence
T3950 380-384 PR_EXT:000006847 denotes ESG1
T3951 385-389 SO_EXT:cDNA denotes cDNA
T3952 427-434 SO_EXT:0000188 denotes introns
T3953 456-462 SO_EXT:0000188 denotes intron
T3954 463-472 SO_EXT:biological_sequence denotes sequences
T3969 890-894 PR_EXT:000006847 denotes ESG1
T3970 895-899 SO_EXT:0000704 denotes gene
T3955 539-560 SO_EXT:0001421 denotes exon-intron junctions
T3956 571-589 SO_EXT:0001416 denotes 5' flanking region
T3957 598-601 CHEBI_SO_EXT:DNA denotes DNA
T3958 628-636 SO_EXT:0000167 denotes promoter
T3959 637-645 SO_EXT:0000165 denotes enhancer
T3960 658-668 GO_EXT:0045289 denotes luciferase
T3961 690-704 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T3962 705-713 CL:0002322 denotes ES cells
T3963 708-713 CL_GO_EXT:cell denotes cells
T3964 726-739 CL:0002371 denotes somatic cells
T3965 734-739 CL_GO_EXT:cell denotes cells
T3966 817-832 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T3967 836-849 CHEBI:26536 denotes retinoic acid
T3968 874-882 SO_EXT:biological_sequence denotes sequence

craft-sa-dev

Id Subject Object Predicate Lexical cue
T4280 0-2 TO denotes To
T4281 3-9 VB denotes obtain
T4282 53-61 VBD denotes screened
T4283 10-13 NN denotes DNA
T4284 14-23 NNS denotes fragments
T4285 24-34 VBG denotes containing
T4286 35-38 DT denotes the
T4287 44-48 NN denotes gene
T4288 39-43 NN denotes ESG1
T4289 48-50 , denotes ,
T4290 50-52 PRP denotes we
T4291 62-65 DT denotes the
T4292 108-112 NN denotes pool
T4293 66-75 JJ denotes bacterial
T4294 87-97 NN denotes chromosome
T4295 76-86 JJ denotes artificial
T4296 98-99 -LRB- denotes (
T4297 99-102 NN denotes BAC
T4298 102-103 -RRB- denotes )
T4299 104-107 NN denotes DNA
T4300 113-115 IN denotes by
T4301 116-119 NN denotes PCR
T4302 120-125 VBG denotes using
T4303 126-132 NN denotes primer
T4304 133-138 NNS denotes pairs
T4305 139-143 WDT denotes that
T4306 155-162 VB denotes amplify
T4307 144-149 MD denotes would
T4308 150-154 RB denotes only
T4309 163-166 DT denotes the
T4310 172-176 NN denotes gene
T4311 167-171 JJ denotes real
T4312 176-178 , denotes ,
T4313 178-181 RB denotes not
T4314 186-197 NNS denotes pseudogenes
T4315 182-185 DT denotes the
T4316 197-198 . denotes .
T4317 198-255 sentence denotes We obtained two independent, but overlapping BAC clones.
T4318 199-201 PRP denotes We
T4319 202-210 VBD denotes obtained
T4320 211-214 CD denotes two
T4321 248-254 NNS denotes clones
T4322 215-226 JJ denotes independent
T4323 226-228 , denotes ,
T4324 228-231 CC denotes but
T4325 232-243 VBG denotes overlapping
T4326 244-247 NN denotes BAC
T4327 254-255 . denotes .
T4328 255-447 sentence denotes Southern blot analyses and sequencing demonstrated that these clones contained a sequence exhibiting complete identity with ESG1 cDNA that was interrupted by two putative introns (Figure 2A).
T4329 256-264 NNP denotes Southern
T4330 265-269 NN denotes blot
T4331 294-306 VBD denotes demonstrated
T4332 270-278 NNS denotes analyses
T4333 279-282 CC denotes and
T4334 283-293 NN denotes sequencing
T4335 307-311 IN denotes that
T4336 325-334 VBD denotes contained
T4337 312-317 DT denotes these
T4338 318-324 NNS denotes clones
T4339 335-336 DT denotes a
T4340 337-345 NN denotes sequence
T4341 346-356 VBG denotes exhibiting
T4342 357-365 JJ denotes complete
T4343 366-374 NN denotes identity
T4344 375-379 IN denotes with
T4345 380-384 NN denotes ESG1
T4346 385-389 NN denotes cDNA
T4347 390-394 WDT denotes that
T4348 399-410 VBN denotes interrupted
T4349 395-398 VBD denotes was
T4350 411-413 IN denotes by
T4351 414-417 CD denotes two
T4352 427-434 NNS denotes introns
T4353 418-426 JJ denotes putative
T4354 435-436 -LRB- denotes (
T4355 443-445 NN denotes 2A
T4356 436-442 NN denotes Figure
T4357 445-446 -RRB- denotes )
T4358 446-447 . denotes .
T4359 447-566 sentence denotes The two intron sequences begin with GT and terminate with AG, fulfilling the GT-AG rule of exon-intron junctions [19].
T4360 448-451 DT denotes The
T4361 463-472 NNS denotes sequences
T4362 452-455 CD denotes two
T4363 456-462 NN denotes intron
T4364 473-478 VBP denotes begin
T4365 479-483 IN denotes with
T4366 484-486 NN denotes GT
T4367 487-490 CC denotes and
T4368 491-500 VB denotes terminate
T4369 501-505 IN denotes with
T4395 593-597 DT denotes this
T4396 602-610 NN denotes fragment
T4397 598-601 NN denotes DNA
T4398 621-627 JJ denotes strong
T4399 646-654 NN denotes activity
T4400 628-636 NN denotes promoter
T4401 637-645 NN denotes enhancer
T4402 636-637 HYPH denotes /
T4403 655-657 IN denotes by
T4404 658-668 NN denotes luciferase
T4405 678-684 NNS denotes assays
T4406 669-677 NN denotes reporter
T4407 685-687 IN denotes in
T4408 688-704 JJ denotes undifferentiated
T4409 708-713 NNS denotes cells
T4410 705-707 NN denotes ES
T4411 713-715 , denotes ,
T4412 715-718 CC denotes but
T4413 719-722 RB denotes not
T4414 723-725 IN denotes in
T4415 726-733 JJ denotes somatic
T4416 734-739 NNS denotes cells
T4417 740-741 -LRB- denotes (
T4418 741-747 NN denotes Figure
T4419 748-749 CD denotes 3
T4420 749-750 -RRB- denotes )
T4421 750-751 . denotes .
T4422 751-850 sentence denotes The same fragment showed much weaker activity after induction of differentiation by retinoic acid.
T4423 752-755 DT denotes The
T4424 761-769 NN denotes fragment
T4425 756-760 JJ denotes same
T4426 770-776 VBD denotes showed
T4427 777-781 RB denotes much
T4428 782-788 JJR denotes weaker
T4429 789-797 NN denotes activity
T4430 798-803 IN denotes after
T4431 804-813 NN denotes induction
T4432 814-816 IN denotes of
T4433 817-832 NN denotes differentiation
T4434 833-835 IN denotes by
T4435 836-844 JJ denotes retinoic
T4436 845-849 NN denotes acid
T4437 849-850 . denotes .
T4438 850-900 sentence denotes We concluded that this sequence is the ESG1 gene.
T4439 851-853 PRP denotes We
T4440 854-863 VBD denotes concluded
T4441 864-868 IN denotes that
T4442 883-885 VBZ denotes is
T4443 869-873 DT denotes this
T4444 874-882 NN denotes sequence
T4445 886-889 DT denotes the
T4446 895-899 NN denotes gene
T4447 890-894 NN denotes ESG1
T4448 899-900 . denotes .
T4386 565-566 . denotes .
T4387 566-751 sentence denotes The 5' flanking region of this DNA fragment exhibited strong promoter/enhancer activity by luciferase reporter assays in undifferentiated ES cells, but not in somatic cells (Figure 3).
T4388 567-570 DT denotes The
T4389 583-589 NN denotes region
T4390 571-572 CD denotes 5
T4391 572-573 SYM denotes '
T4392 574-582 NN denotes flanking
T4393 611-620 VBD denotes exhibited
T4394 590-592 IN denotes of
T4370 506-508 NN denotes AG
T4371 508-510 , denotes ,
T4372 510-520 VBG denotes fulfilling
T4373 521-524 DT denotes the
T4374 531-535 NN denotes rule
T4375 525-527 NN denotes GT
T4376 528-530 NN denotes AG
T4377 527-528 HYPH denotes -
T4378 536-538 IN denotes of
T4379 539-543 NN denotes exon
T4380 544-550 NN denotes intron
T4381 543-544 HYPH denotes -
T4382 551-560 NNS denotes junctions
T4383 561-562 -LRB- denotes [
T4384 562-564 CD denotes 19
T4385 564-565 -RRB- denotes ]
R969 T4280 T4281 aux To,obtain
R970 T4281 T4282 advcl obtain,screened
R971 T4283 T4284 compound DNA,fragments
R972 T4284 T4281 dobj fragments,obtain
R973 T4285 T4284 acl containing,fragments
R974 T4286 T4287 det the,gene
R975 T4287 T4285 dobj gene,containing
R976 T4288 T4287 compound ESG1,gene
R977 T4289 T4282 punct ", ",screened
R978 T4290 T4282 nsubj we,screened
R979 T4291 T4292 det the,pool
R980 T4292 T4282 dobj pool,screened
R981 T4293 T4294 amod bacterial,chromosome
R982 T4294 T4292 nmod chromosome,pool
R983 T4295 T4294 amod artificial,chromosome
R984 T4296 T4294 punct (,chromosome
R985 T4297 T4294 appos BAC,chromosome
R986 T4298 T4292 punct ),pool
R987 T4299 T4292 compound DNA,pool
R988 T4300 T4282 prep by,screened
R989 T4301 T4300 pobj PCR,by
R990 T4302 T4282 advcl using,screened
R991 T4303 T4304 compound primer,pairs
R992 T4304 T4302 dobj pairs,using
R993 T4305 T4306 dep that,amplify
R994 T4306 T4304 relcl amplify,pairs
R995 T4307 T4306 aux would,amplify
R996 T4308 T4306 advmod only,amplify
R997 T4309 T4310 det the,gene
R998 T4310 T4306 dobj gene,amplify
R999 T4311 T4310 amod real,gene
R1000 T4312 T4306 punct ", ",amplify
R1001 T4313 T4314 neg not,pseudogenes
R1002 T4314 T4306 dep pseudogenes,amplify
R1003 T4315 T4314 det the,pseudogenes
R1004 T4316 T4282 punct .,screened
R1005 T4318 T4319 nsubj We,obtained
R1006 T4320 T4321 nummod two,clones
R1007 T4321 T4319 dobj clones,obtained
R1008 T4322 T4321 amod independent,clones
R1009 T4323 T4322 punct ", ",independent
R1010 T4324 T4322 cc but,independent
R1011 T4325 T4322 conj overlapping,independent
R1012 T4326 T4321 compound BAC,clones
R1013 T4327 T4319 punct .,obtained
R1014 T4329 T4330 compound Southern,blot
R1015 T4330 T4331 nsubj blot,demonstrated
R1016 T4332 T4330 appos analyses,blot
R1017 T4333 T4332 cc and,analyses
R1018 T4334 T4332 conj sequencing,analyses
R1019 T4335 T4336 mark that,contained
R1020 T4336 T4331 ccomp contained,demonstrated
R1021 T4337 T4338 det these,clones
R1022 T4338 T4336 nsubj clones,contained
R1023 T4339 T4340 det a,sequence
R1024 T4340 T4336 dobj sequence,contained
R1025 T4341 T4340 acl exhibiting,sequence
R1026 T4342 T4343 amod complete,identity
R1027 T4343 T4341 dobj identity,exhibiting
R1028 T4344 T4343 prep with,identity
R1029 T4345 T4346 compound ESG1,cDNA
R1030 T4346 T4344 pobj cDNA,with
R1031 T4347 T4348 dep that,interrupted
R1032 T4348 T4340 relcl interrupted,sequence
R1033 T4349 T4348 auxpass was,interrupted
R1034 T4350 T4348 agent by,interrupted
R1035 T4351 T4352 nummod two,introns
R1036 T4352 T4350 pobj introns,by
R1037 T4353 T4352 amod putative,introns
R1038 T4354 T4355 punct (,2A
R1039 T4355 T4348 parataxis 2A,interrupted
R1040 T4356 T4355 compound Figure,2A
R1041 T4357 T4355 punct ),2A
R1042 T4358 T4331 punct .,demonstrated
R1043 T4360 T4361 det The,sequences
R1044 T4361 T4364 nsubj sequences,begin
R1045 T4362 T4361 nummod two,sequences
R1046 T4363 T4361 compound intron,sequences
R1047 T4365 T4364 prep with,begin
R1048 T4366 T4365 pobj GT,with
R1049 T4367 T4364 cc and,begin
R1050 T4368 T4364 conj terminate,begin
R1051 T4369 T4368 prep with,terminate
R1052 T4370 T4369 pobj AG,with
R1053 T4371 T4364 punct ", ",begin
R1054 T4372 T4364 advcl fulfilling,begin
R1055 T4373 T4374 det the,rule
R1056 T4374 T4372 dobj rule,fulfilling
R1057 T4375 T4376 compound GT,AG
R1058 T4376 T4374 compound AG,rule
R1059 T4377 T4376 punct -,AG
R1060 T4378 T4374 prep of,rule
R1061 T4379 T4380 compound exon,intron
R1062 T4380 T4382 compound intron,junctions
R1063 T4381 T4380 punct -,intron
R1064 T4382 T4378 pobj junctions,of
R1065 T4383 T4384 punct [,19
R1066 T4384 T4372 parataxis 19,fulfilling
R1067 T4385 T4384 punct ],19
R1068 T4386 T4364 punct .,begin
R1069 T4388 T4389 det The,region
R1070 T4389 T4393 nsubj region,exhibited
R1071 T4390 T4389 nummod 5,region
R1072 T4391 T4390 punct ',5
R1073 T4392 T4389 compound flanking,region
R1074 T4394 T4389 prep of,region
R1075 T4395 T4396 det this,fragment
R1076 T4396 T4394 pobj fragment,of
R1077 T4397 T4396 compound DNA,fragment
R1078 T4398 T4399 amod strong,activity
R1079 T4399 T4393 dobj activity,exhibited
R1080 T4400 T4401 compound promoter,enhancer
R1081 T4401 T4399 compound enhancer,activity
R1082 T4402 T4401 punct /,enhancer
R1083 T4403 T4393 prep by,exhibited
R1084 T4404 T4405 compound luciferase,assays
R1085 T4405 T4403 pobj assays,by
R1086 T4406 T4405 compound reporter,assays
R1087 T4407 T4393 prep in,exhibited
R1088 T4408 T4409 amod undifferentiated,cells
R1089 T4409 T4407 pobj cells,in
R1090 T4410 T4409 compound ES,cells
R1091 T4411 T4407 punct ", ",in
R1092 T4412 T4407 cc but,in
R1093 T4413 T4412 neg not,but
R1094 T4414 T4407 conj in,in
R1095 T4415 T4416 amod somatic,cells
R1096 T4416 T4414 pobj cells,in
R1097 T4417 T4418 punct (,Figure
R1098 T4418 T4393 parataxis Figure,exhibited
R1099 T4419 T4418 nummod 3,Figure
R1100 T4420 T4418 punct ),Figure
R1101 T4421 T4393 punct .,exhibited
R1102 T4423 T4424 det The,fragment
R1103 T4424 T4426 nsubj fragment,showed
R1104 T4425 T4424 amod same,fragment
R1105 T4427 T4428 advmod much,weaker
R1106 T4428 T4429 amod weaker,activity
R1107 T4429 T4426 dobj activity,showed
R1108 T4430 T4426 prep after,showed
R1109 T4431 T4430 pobj induction,after
R1110 T4432 T4431 prep of,induction
R1111 T4433 T4432 pobj differentiation,of
R1112 T4434 T4431 prep by,induction
R1113 T4435 T4436 amod retinoic,acid
R1114 T4436 T4434 pobj acid,by
R1115 T4437 T4426 punct .,showed
R1116 T4439 T4440 nsubj We,concluded
R1117 T4441 T4442 mark that,is
R1118 T4442 T4440 ccomp is,concluded
R1119 T4443 T4444 det this,sequence
R1120 T4444 T4442 nsubj sequence,is
R1121 T4445 T4446 det the,gene
R1122 T4446 T4442 attr gene,is
R1123 T4447 T4446 compound ESG1,gene
R1124 T4448 T4440 punct .,concluded