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PMC:1420271 / 2549-3488 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2020 35-44 CHEBI:36357 denotes molecules
T2021 58-66 CL:0002322 denotes ES cells
T2022 153-158 SO:0000704 denotes genes
T2023 172-181 GO:0010467 denotes expressed
T2024 185-193 CL:0002322 denotes ES cells
T2025 198-211 UBERON:0019248 denotes early embryos
T2026 271-280 GO:0010467 denotes expressed
T2027 271-293 SO:0000345 denotes expressed sequence tag
T2028 337-348 SO:0000673 denotes transcripts
T2029 360-364 PR:000006847 denotes ESG1
T2030 390-395 PR:000006847 denotes dppa5
T2031 399-404 PR:000006847 denotes ECAT2
T2032 406-410 PR:000006847 denotes ESG1
T2033 442-452 SO:0000673 denotes transcript
T2034 453-457 PR:000006847 denotes Ph34
T2035 485-498 CHEBI:26536 denotes retinoic acid
T2036 502-511 UBERON:0000922 denotes embryonic
T2037 502-511 _FRAGMENT denotes embryonic
T2038 522-527 CL:0002321 denotes cells
T2039 538-548 GO:0010467 denotes expression
T2040 557-561 SO:0000704 denotes gene
T2041 578-582 NCBITaxon:10088 denotes mice
T2042 586-599 UBERON:0019248 denotes early embryos
T2043 604-614 CL:0000586 denotes germ cells
T2050 710-721 _FRAGMENT denotes multipotent
T2051 731-741 CL:0000048 denotes stem cells
T2052 722-741 CL:0000014 denotes germline stem cells
T2053 748-752 PR:000006847 denotes ESG1
T2054 820-826 SO:0000417 denotes domain
T2055 852-858 SO:0000417 denotes domain
T2056 897-901 PR:000006847 denotes ESG1
T2044 632-641 GO:0010467 denotes expressed
T2045 674-682 CL:0002322 denotes ES cells
T2046 684-693 UBERON:0000922 denotes embryonic
T2047 684-693 _FRAGMENT denotes embryonic
T2048 699-704 CL:0002321 denotes cells
T2049 694-704 CL:0000586 denotes germ cells
R316 T2038 T2037 _lexicallyChainedTo cells,embryonic
R317 T2048 T2047 _lexicallyChainedTo cells,embryonic
R318 T2051 T2050 _lexicallyChainedTo stem cells,multipotent

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2114 3-7 CL_GO_EXT:cell denotes cell
T2115 8-15 CHEBI_GO_EXT:biological_process_or_quality_or_role denotes biology
T2116 35-44 CHEBI:36357 denotes molecules
T2117 58-66 CL:0002322 denotes ES cells
T2118 61-66 CL_GO_EXT:cell denotes cells
T2119 153-158 SO_EXT:0000704 denotes genes
T2120 172-181 GO:0010467 denotes expressed
T2121 185-193 CL:0002322 denotes ES cells
T2122 188-193 CL_GO_EXT:cell denotes cells
T2123 198-211 UBERON:0019248 denotes early embryos
T2124 239-242 CHEBI_SO_EXT:DNA denotes DNA
T2125 271-280 GO:0010467 denotes expressed
T2126 271-293 SO_EXT:0000345 denotes expressed sequence tag
T2127 290-293 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes tag
T2128 337-348 SO_EXT:0000673 denotes transcripts
T2129 360-364 PR_EXT:000006847 denotes ESG1
T2130 390-395 PR_EXT:000006847 denotes dppa5
T2131 399-404 PR_EXT:000006847 denotes ECAT2
T2132 406-410 PR_EXT:000006847 denotes ESG1
T2133 442-452 SO_EXT:0000673 denotes transcript
T2134 453-457 PR_EXT:000006847 denotes Ph34
T2135 467-481 GO_EXT:negative_regulation denotes down-regulated
T2136 485-498 CHEBI:26536 denotes retinoic acid
T2137 502-511 UBERON:0000922 denotes embryonic
T2138 502-511 _FRAGMENT denotes embryonic
T2139 522-527 CL:0002321 denotes cells
T2140 522-527 CL_GO_EXT:cell denotes cells
T2141 538-548 GO:0010467 denotes expression
T2142 557-561 SO_EXT:0000704 denotes gene
T2143 578-582 NCBITaxon:10088 denotes mice
T2144 586-599 UBERON:0019248 denotes early embryos
T2145 604-614 CL:0000586 denotes germ cells
T2146 609-614 CL_GO_EXT:cell denotes cells
T2147 632-641 GO:0010467 denotes expressed
T2148 657-662 CL_GO_EXT:cell denotes cells
T2149 674-682 CL:0002322 denotes ES cells
T2150 677-682 CL_GO_EXT:cell denotes cells
T2151 684-693 UBERON:0000922 denotes embryonic
T2152 684-693 _FRAGMENT denotes embryonic
T2153 699-704 CL:0002321 denotes cells
T2154 694-704 CL:0000586 denotes germ cells
T2155 699-704 CL_GO_EXT:cell denotes cells
T2156 710-721 _FRAGMENT denotes multipotent
T2157 731-741 CL:0000048 denotes stem cells
T2158 722-741 CL:0000014 denotes germline stem cells
T2159 736-741 CL_GO_EXT:cell denotes cells
T2160 748-752 PR_EXT:000006847 denotes ESG1
T2161 753-760 SO_EXT:sequence_coding_function denotes encodes
T2162 763-774 CHEBI_SO_EXT:polypeptide denotes polypeptide
T2163 782-793 CHEBI_SO_EXT:amino_acid denotes amino acids
T2164 820-826 SO_EXT:0000417 denotes domain
T2165 840-843 CHEBI_SO_EXT:RNA denotes RNA
T2166 844-851 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2167 852-858 SO_EXT:0000417 denotes domain
T2168 897-901 PR_EXT:000006847 denotes ESG1
T2169 918-921 CHEBI_SO_EXT:RNA denotes RNA
T2170 922-929 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2171 930-937 CHEBI_PR_EXT:protein denotes protein
R322 T2139 T2138 _lexicallyChainedTo cells,embryonic
R323 T2153 T2152 _lexicallyChainedTo cells,embryonic
R324 T2157 T2156 _lexicallyChainedTo stem cells,multipotent

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2332 3-7 NN denotes cell
T2333 8-15 NN denotes biology
T2334 16-17 -LRB- denotes [
T2335 17-18 CD denotes 4
T2336 18-19 SYM denotes -
T2337 19-20 CD denotes 6
T2338 20-21 -RRB- denotes ]
T2339 21-22 . denotes .
T2340 22-212 sentence denotes To identify molecules essential in ES cells for these properties, several groups have utilized transcriptome analyses to identify genes specifically expressed in ES cells and early embryos.
T2341 23-25 TO denotes To
T2342 26-34 VB denotes identify
T2343 109-117 VBN denotes utilized
T2344 35-44 NNS denotes molecules
T2345 45-54 JJ denotes essential
T2346 55-57 IN denotes in
T2347 58-60 NN denotes ES
T2348 61-66 NNS denotes cells
T2349 67-70 IN denotes for
T2350 71-76 DT denotes these
T2351 77-87 NNS denotes properties
T2352 87-89 , denotes ,
T2353 89-96 JJ denotes several
T2354 97-103 NNS denotes groups
T2355 104-108 VBP denotes have
T2356 118-131 NN denotes transcriptome
T2357 132-140 NNS denotes analyses
T2358 141-143 TO denotes to
T2359 144-152 VB denotes identify
T2360 153-158 NNS denotes genes
T2361 159-171 RB denotes specifically
T2362 172-181 VBN denotes expressed
T2363 182-184 IN denotes in
T2364 185-187 NN denotes ES
T2365 188-193 NNS denotes cells
T2366 194-197 CC denotes and
T2367 198-203 JJ denotes early
T2368 204-211 NNS denotes embryos
T2369 211-212 . denotes .
T2370 212-405 sentence denotes These analyses, including DNA microarray analyses [7] and expressed sequence tag analyses [8-12], identified several common transcripts, including ESG1 that was also designated dppa5 or ECAT2.
T2371 213-218 DT denotes These
T2372 219-227 NNS denotes analyses
T2373 311-321 VBD denotes identified
T2374 227-229 , denotes ,
T2375 229-238 VBG denotes including
T2376 239-242 NN denotes DNA
T2377 254-262 NNS denotes analyses
T2378 243-253 NN denotes microarray
T2379 263-264 -LRB- denotes [
T2380 264-265 CD denotes 7
T2381 265-266 -RRB- denotes ]
T2382 267-270 CC denotes and
T2383 271-280 VBN denotes expressed
T2384 281-289 NN denotes sequence
T2385 294-302 NNS denotes analyses
T2386 290-293 NN denotes tag
T2387 303-304 -LRB- denotes [
T2388 304-305 CD denotes 8
T2389 305-306 SYM denotes -
T2390 306-308 CD denotes 12
T2391 308-309 -RRB- denotes ]
T2392 309-311 , denotes ,
T2393 322-329 JJ denotes several
T2394 337-348 NNS denotes transcripts
T2395 330-336 JJ denotes common
T2396 348-350 , denotes ,
T2397 350-359 VBG denotes including
T2398 360-364 NN denotes ESG1
T2399 365-369 WDT denotes that
T2400 379-389 VBN denotes designated
T2401 370-373 VBD denotes was
T2402 374-378 RB denotes also
T2403 390-395 NN denotes dppa5
T2404 396-398 CC denotes or
T2405 399-404 NN denotes ECAT2
T2406 404-405 . denotes .
T2407 405-533 sentence denotes ESG1 was originally identified as a transcript Ph34 that was down-regulated by retinoic acid in embryonic carcinoma cells [13].
T2408 406-410 NN denotes ESG1
T2409 426-436 VBN denotes identified
T2410 411-414 VBD denotes was
T2411 415-425 RB denotes originally
T2412 437-439 IN denotes as
T2413 440-441 DT denotes a
T2414 453-457 NN denotes Ph34
T2415 442-452 NN denotes transcript
T2416 458-462 WDT denotes that
T2417 472-481 VBN denotes regulated
T2418 463-466 VBD denotes was
T2419 467-471 RB denotes down
T2420 471-472 HYPH denotes -
T2421 482-484 IN denotes by
T2422 485-493 JJ denotes retinoic
T2423 494-498 NN denotes acid
T2424 499-501 IN denotes in
T2425 502-511 JJ denotes embryonic
T2426 512-521 NN denotes carcinoma
T2427 522-527 NNS denotes cells
T2428 528-529 -LRB- denotes [
T2429 529-531 CD denotes 13
T2430 531-532 -RRB- denotes ]
T2431 532-533 . denotes .
T2432 533-620 sentence denotes The expression of this gene was confined in mice to early embryos and germ cells [14].
T2433 534-537 DT denotes The
T2434 538-548 NN denotes expression
T2435 566-574 VBN denotes confined
T2436 549-551 IN denotes of
T2437 552-556 DT denotes this
T2438 557-561 NN denotes gene
T2439 562-565 VBD denotes was
T2440 575-577 IN denotes in
T2441 578-582 NNS denotes mice
T2442 583-585 IN denotes to
T2443 586-591 JJ denotes early
T2444 592-599 NNS denotes embryos
T2445 600-603 CC denotes and
T2446 604-608 NN denotes germ
T2447 609-614 NNS denotes cells
T2448 615-616 -LRB- denotes [
T2449 616-618 CD denotes 14
T2450 618-619 -RRB- denotes ]
T2451 619-620 . denotes .
T2452 620-747 sentence denotes It is also expressed in pluripotent cells, including ES cells, embryonic germ cells, and multipotent germline stem cells [15].
T2453 621-623 PRP denotes It
T2454 632-641 VBN denotes expressed
T2455 624-626 VBZ denotes is
T2456 627-631 RB denotes also
T2457 642-644 IN denotes in
T2458 645-656 JJ denotes pluripotent
T2459 657-662 NNS denotes cells
T2460 662-664 , denotes ,
T2461 664-673 VBG denotes including
T2462 674-676 NN denotes ES
T2463 677-682 NNS denotes cells
T2464 682-684 , denotes ,
T2465 684-693 JJ denotes embryonic
T2466 699-704 NNS denotes cells
T2467 694-698 NN denotes germ
T2468 704-706 , denotes ,
T2469 706-709 CC denotes and
T2470 710-721 JJ denotes multipotent
T2471 736-741 NNS denotes cells
T2472 722-730 NN denotes germline
T2473 731-735 NN denotes stem
T2474 742-743 -LRB- denotes [
T2475 743-745 CD denotes 15
T2476 745-746 -RRB- denotes ]
T2477 746-747 . denotes .
T2478 747-864 sentence denotes ESG1 encodes a polypeptide of 118 amino acids that contains a single KH domain, which is an RNA-binding domain [16].
T2479 748-752 NN denotes ESG1
T2480 753-760 VBZ denotes encodes
T2481 761-762 DT denotes a
T2482 763-774 NN denotes polypeptide
T2483 775-777 IN denotes of
T2484 778-781 CD denotes 118
T2485 788-793 NNS denotes acids
T2486 782-787 NN denotes amino
T2487 794-798 WDT denotes that
T2488 799-807 VBZ denotes contains
T2489 808-809 DT denotes a
T2490 820-826 NN denotes domain
T2491 810-816 JJ denotes single
T2492 817-819 NN denotes KH
T2493 826-828 , denotes ,
T2494 828-833 WDT denotes which
T2495 834-836 VBZ denotes is
T2496 837-839 DT denotes an
T2497 852-858 NN denotes domain
T2498 840-843 NN denotes RNA
T2499 844-851 VBG denotes binding
T2500 843-844 HYPH denotes -
T2501 859-860 -LRB- denotes [
T2502 860-862 CD denotes 16
T2503 862-863 -RRB- denotes ]
T2504 863-864 . denotes .
T2506 865-867 PRP denotes It
T2507 868-875 VBZ denotes remains
T2508 876-883 JJ denotes unclear
T2509 883-885 , denotes ,
T2510 885-892 RB denotes however
T2511 892-894 , denotes ,
T2512 894-896 IN denotes if
T2513 902-911 VBZ denotes functions
T2514 897-901 NN denotes ESG1
T2515 912-914 IN denotes as
T2516 915-917 DT denotes an
T2517 930-937 NN denotes protein
T2518 918-921 NN denotes RNA
T2519 922-929 VBG denotes binding
T2520 921-922 HYPH denotes -
R440 T2332 T2333 compound cell,biology
R442 T2334 T2335 punct [,4
R444 T2336 T2337 punct -,6
R445 T2337 T2335 prep 6,4
R446 T2338 T2335 punct ],4
R448 T2341 T2342 aux To,identify
R449 T2342 T2343 advcl identify,utilized
R450 T2344 T2342 dobj molecules,identify
R451 T2345 T2344 relcl essential,molecules
R452 T2346 T2345 prep in,essential
R453 T2347 T2348 compound ES,cells
R454 T2348 T2346 pobj cells,in
R455 T2349 T2345 prep for,essential
R456 T2350 T2351 det these,properties
R457 T2351 T2349 pobj properties,for
R458 T2352 T2343 punct ", ",utilized
R459 T2353 T2354 amod several,groups
R460 T2354 T2343 nsubj groups,utilized
R461 T2355 T2343 aux have,utilized
R462 T2356 T2357 compound transcriptome,analyses
R463 T2357 T2343 dobj analyses,utilized
R464 T2358 T2359 aux to,identify
R465 T2359 T2343 advcl identify,utilized
R466 T2360 T2359 dobj genes,identify
R467 T2361 T2362 advmod specifically,expressed
R468 T2362 T2360 acl expressed,genes
R469 T2363 T2362 prep in,expressed
R470 T2364 T2365 compound ES,cells
R471 T2365 T2363 pobj cells,in
R472 T2366 T2365 cc and,cells
R473 T2367 T2368 amod early,embryos
R474 T2368 T2365 conj embryos,cells
R475 T2369 T2343 punct .,utilized
R476 T2371 T2372 det These,analyses
R477 T2372 T2373 nsubj analyses,identified
R478 T2374 T2372 punct ", ",analyses
R479 T2375 T2372 prep including,analyses
R480 T2376 T2377 compound DNA,analyses
R481 T2377 T2375 pobj analyses,including
R482 T2378 T2377 compound microarray,analyses
R483 T2379 T2380 punct [,7
R484 T2380 T2377 parataxis 7,analyses
R485 T2381 T2380 punct ],7
R486 T2382 T2377 cc and,analyses
R487 T2383 T2384 amod expressed,sequence
R488 T2384 T2385 compound sequence,analyses
R489 T2385 T2377 conj analyses,analyses
R490 T2386 T2385 compound tag,analyses
R491 T2387 T2388 punct [,8
R492 T2388 T2385 parataxis 8,analyses
R493 T2389 T2390 punct -,12
R494 T2390 T2388 prep 12,8
R495 T2391 T2388 punct ],8
R496 T2392 T2373 punct ", ",identified
R497 T2393 T2394 amod several,transcripts
R498 T2394 T2373 dobj transcripts,identified
R499 T2395 T2394 amod common,transcripts
R500 T2396 T2394 punct ", ",transcripts
R501 T2397 T2394 prep including,transcripts
R502 T2398 T2397 pobj ESG1,including
R503 T2399 T2400 dep that,designated
R504 T2400 T2394 relcl designated,transcripts
R505 T2401 T2400 auxpass was,designated
R506 T2402 T2400 advmod also,designated
R507 T2403 T2400 oprd dppa5,designated
R508 T2404 T2403 cc or,dppa5
R509 T2405 T2403 conj ECAT2,dppa5
R510 T2406 T2373 punct .,identified
R511 T2408 T2409 nsubjpass ESG1,identified
R512 T2410 T2409 auxpass was,identified
R513 T2411 T2409 advmod originally,identified
R514 T2412 T2409 prep as,identified
R515 T2413 T2414 det a,Ph34
R516 T2414 T2412 pobj Ph34,as
R517 T2415 T2414 compound transcript,Ph34
R518 T2416 T2417 dep that,regulated
R519 T2417 T2414 relcl regulated,Ph34
R520 T2418 T2417 auxpass was,regulated
R521 T2419 T2417 advmod down,regulated
R522 T2420 T2417 punct -,regulated
R523 T2421 T2417 agent by,regulated
R524 T2422 T2423 amod retinoic,acid
R525 T2423 T2421 pobj acid,by
R526 T2424 T2417 prep in,regulated
R527 T2425 T2426 amod embryonic,carcinoma
R528 T2426 T2427 compound carcinoma,cells
R529 T2427 T2424 pobj cells,in
R530 T2428 T2429 punct [,13
R531 T2429 T2417 parataxis 13,regulated
R532 T2430 T2429 punct ],13
R533 T2431 T2409 punct .,identified
R534 T2433 T2434 det The,expression
R535 T2434 T2435 nsubjpass expression,confined
R536 T2436 T2434 prep of,expression
R537 T2437 T2438 det this,gene
R538 T2438 T2436 pobj gene,of
R539 T2439 T2435 auxpass was,confined
R540 T2440 T2435 prep in,confined
R541 T2441 T2440 pobj mice,in
R542 T2442 T2435 prep to,confined
R543 T2443 T2444 amod early,embryos
R544 T2444 T2442 pobj embryos,to
R545 T2445 T2444 cc and,embryos
R546 T2446 T2447 compound germ,cells
R547 T2447 T2444 conj cells,embryos
R548 T2448 T2449 punct [,14
R549 T2449 T2435 parataxis 14,confined
R550 T2450 T2449 punct ],14
R551 T2451 T2435 punct .,confined
R552 T2453 T2454 nsubjpass It,expressed
R553 T2455 T2454 auxpass is,expressed
R554 T2456 T2454 advmod also,expressed
R555 T2457 T2454 prep in,expressed
R556 T2458 T2459 amod pluripotent,cells
R557 T2459 T2457 pobj cells,in
R558 T2460 T2459 punct ", ",cells
R559 T2461 T2459 prep including,cells
R560 T2462 T2463 compound ES,cells
R561 T2463 T2461 pobj cells,including
R562 T2464 T2463 punct ", ",cells
R563 T2465 T2466 amod embryonic,cells
R564 T2466 T2463 conj cells,cells
R565 T2467 T2466 compound germ,cells
R566 T2468 T2466 punct ", ",cells
R567 T2469 T2466 cc and,cells
R568 T2470 T2471 amod multipotent,cells
R569 T2471 T2466 conj cells,cells
R570 T2472 T2471 compound germline,cells
R571 T2473 T2471 compound stem,cells
R572 T2474 T2475 punct [,15
R573 T2475 T2454 parataxis 15,expressed
R574 T2476 T2475 punct ],15
R575 T2477 T2454 punct .,expressed
R576 T2479 T2480 nsubj ESG1,encodes
R577 T2481 T2482 det a,polypeptide
R578 T2482 T2480 dobj polypeptide,encodes
R579 T2483 T2482 prep of,polypeptide
R580 T2484 T2485 nummod 118,acids
R581 T2485 T2483 pobj acids,of
R582 T2486 T2485 compound amino,acids
R583 T2487 T2488 dep that,contains
R584 T2488 T2482 relcl contains,polypeptide
R585 T2489 T2490 det a,domain
R586 T2490 T2488 dobj domain,contains
R587 T2491 T2490 amod single,domain
R588 T2492 T2490 compound KH,domain
R589 T2493 T2490 punct ", ",domain
R590 T2494 T2495 dep which,is
R591 T2495 T2490 relcl is,domain
R592 T2496 T2497 det an,domain
R593 T2497 T2495 attr domain,is
R594 T2498 T2499 npadvmod RNA,binding
R595 T2499 T2497 amod binding,domain
R596 T2500 T2499 punct -,binding
R597 T2501 T2502 punct [,16
R598 T2502 T2495 parataxis 16,is
R599 T2503 T2502 punct ],16
R600 T2504 T2480 punct .,encodes
R601 T2506 T2507 nsubj It,remains
R602 T2508 T2507 acomp unclear,remains
R603 T2509 T2507 punct ", ",remains
R604 T2510 T2507 advmod however,remains
R605 T2511 T2507 punct ", ",remains
R606 T2512 T2513 mark if,functions
R607 T2513 T2507 ccomp functions,remains
R608 T2514 T2513 nsubj ESG1,functions
R609 T2515 T2513 prep as,functions
R610 T2516 T2517 det an,protein
R611 T2517 T2515 pobj protein,as
R612 T2518 T2519 npadvmod RNA,binding
R613 T2519 T2517 amod binding,protein
R614 T2520 T2519 punct -,binding