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PMC:1420271 / 2525-3464 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2019 22-31 CL:0000034 denotes stem cell
T2020 59-68 CHEBI:36357 denotes molecules
T2021 82-90 CL:0002322 denotes ES cells
T2022 177-182 SO:0000704 denotes genes
T2023 196-205 GO:0010467 denotes expressed
T2024 209-217 CL:0002322 denotes ES cells
T2025 222-235 UBERON:0019248 denotes early embryos
T2026 295-304 GO:0010467 denotes expressed
T2027 295-317 SO:0000345 denotes expressed sequence tag
T2028 361-372 SO:0000673 denotes transcripts
T2029 384-388 PR:000006847 denotes ESG1
T2030 414-419 PR:000006847 denotes dppa5
T2031 423-428 PR:000006847 denotes ECAT2
T2032 430-434 PR:000006847 denotes ESG1
T2033 466-476 SO:0000673 denotes transcript
T2034 477-481 PR:000006847 denotes Ph34
T2035 509-522 CHEBI:26536 denotes retinoic acid
T2036 526-535 UBERON:0000922 denotes embryonic
T2037 526-535 _FRAGMENT denotes embryonic
T2038 546-551 CL:0002321 denotes cells
T2039 562-572 GO:0010467 denotes expression
T2040 581-585 SO:0000704 denotes gene
T2041 602-606 NCBITaxon:10088 denotes mice
T2042 610-623 UBERON:0019248 denotes early embryos
T2043 628-638 CL:0000586 denotes germ cells
T2050 734-745 _FRAGMENT denotes multipotent
T2051 755-765 CL:0000048 denotes stem cells
T2052 746-765 CL:0000014 denotes germline stem cells
T2053 772-776 PR:000006847 denotes ESG1
T2054 844-850 SO:0000417 denotes domain
T2055 876-882 SO:0000417 denotes domain
T2056 921-925 PR:000006847 denotes ESG1
T2044 656-665 GO:0010467 denotes expressed
T2045 698-706 CL:0002322 denotes ES cells
T2046 708-717 UBERON:0000922 denotes embryonic
T2047 708-717 _FRAGMENT denotes embryonic
T2048 723-728 CL:0002321 denotes cells
T2049 718-728 CL:0000586 denotes germ cells
R316 T2038 T2037 _lexicallyChainedTo cells,embryonic
R317 T2048 T2047 _lexicallyChainedTo cells,embryonic
R318 T2051 T2050 _lexicallyChainedTo stem cells,multipotent

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2113 22-31 CL:0000034 denotes stem cell
T2114 27-31 CL_GO_EXT:cell denotes cell
T2115 32-39 CHEBI_GO_EXT:biological_process_or_quality_or_role denotes biology
T2116 59-68 CHEBI:36357 denotes molecules
T2117 82-90 CL:0002322 denotes ES cells
T2118 85-90 CL_GO_EXT:cell denotes cells
T2119 177-182 SO_EXT:0000704 denotes genes
T2120 196-205 GO:0010467 denotes expressed
T2121 209-217 CL:0002322 denotes ES cells
T2122 212-217 CL_GO_EXT:cell denotes cells
T2123 222-235 UBERON:0019248 denotes early embryos
T2124 263-266 CHEBI_SO_EXT:DNA denotes DNA
T2125 295-304 GO:0010467 denotes expressed
T2126 295-317 SO_EXT:0000345 denotes expressed sequence tag
T2127 314-317 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes tag
T2128 361-372 SO_EXT:0000673 denotes transcripts
T2129 384-388 PR_EXT:000006847 denotes ESG1
T2130 414-419 PR_EXT:000006847 denotes dppa5
T2131 423-428 PR_EXT:000006847 denotes ECAT2
T2132 430-434 PR_EXT:000006847 denotes ESG1
T2133 466-476 SO_EXT:0000673 denotes transcript
T2134 477-481 PR_EXT:000006847 denotes Ph34
T2135 491-505 GO_EXT:negative_regulation denotes down-regulated
T2136 509-522 CHEBI:26536 denotes retinoic acid
T2137 526-535 UBERON:0000922 denotes embryonic
T2138 526-535 _FRAGMENT denotes embryonic
T2139 546-551 CL:0002321 denotes cells
T2140 546-551 CL_GO_EXT:cell denotes cells
T2141 562-572 GO:0010467 denotes expression
T2142 581-585 SO_EXT:0000704 denotes gene
T2143 602-606 NCBITaxon:10088 denotes mice
T2144 610-623 UBERON:0019248 denotes early embryos
T2145 628-638 CL:0000586 denotes germ cells
T2146 633-638 CL_GO_EXT:cell denotes cells
T2147 656-665 GO:0010467 denotes expressed
T2148 681-686 CL_GO_EXT:cell denotes cells
T2149 698-706 CL:0002322 denotes ES cells
T2150 701-706 CL_GO_EXT:cell denotes cells
T2151 708-717 UBERON:0000922 denotes embryonic
T2152 708-717 _FRAGMENT denotes embryonic
T2153 723-728 CL:0002321 denotes cells
T2154 718-728 CL:0000586 denotes germ cells
T2155 723-728 CL_GO_EXT:cell denotes cells
T2156 734-745 _FRAGMENT denotes multipotent
T2157 755-765 CL:0000048 denotes stem cells
T2158 746-765 CL:0000014 denotes germline stem cells
T2159 760-765 CL_GO_EXT:cell denotes cells
T2160 772-776 PR_EXT:000006847 denotes ESG1
T2161 777-784 SO_EXT:sequence_coding_function denotes encodes
T2162 787-798 CHEBI_SO_EXT:polypeptide denotes polypeptide
T2163 806-817 CHEBI_SO_EXT:amino_acid denotes amino acids
T2164 844-850 SO_EXT:0000417 denotes domain
T2165 864-867 CHEBI_SO_EXT:RNA denotes RNA
T2166 868-875 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2167 876-882 SO_EXT:0000417 denotes domain
T2168 921-925 PR_EXT:000006847 denotes ESG1
R322 T2139 T2138 _lexicallyChainedTo cells,embryonic
R323 T2153 T2152 _lexicallyChainedTo cells,embryonic
R324 T2157 T2156 _lexicallyChainedTo stem cells,multipotent

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2325 0-5 NN denotes focus
T2327 6-8 IN denotes of
T2328 9-12 DT denotes the
T2329 13-18 NN denotes field
T2330 19-21 IN denotes of
T2331 22-26 NN denotes stem
T2332 27-31 NN denotes cell
T2333 32-39 NN denotes biology
T2334 40-41 -LRB- denotes [
T2335 41-42 CD denotes 4
T2336 42-43 SYM denotes -
T2337 43-44 CD denotes 6
T2338 44-45 -RRB- denotes ]
T2339 45-46 . denotes .
T2340 46-236 sentence denotes To identify molecules essential in ES cells for these properties, several groups have utilized transcriptome analyses to identify genes specifically expressed in ES cells and early embryos.
T2341 47-49 TO denotes To
T2342 50-58 VB denotes identify
T2343 133-141 VBN denotes utilized
T2344 59-68 NNS denotes molecules
T2345 69-78 JJ denotes essential
T2346 79-81 IN denotes in
T2347 82-84 NN denotes ES
T2348 85-90 NNS denotes cells
T2349 91-94 IN denotes for
T2350 95-100 DT denotes these
T2351 101-111 NNS denotes properties
T2352 111-113 , denotes ,
T2353 113-120 JJ denotes several
T2354 121-127 NNS denotes groups
T2355 128-132 VBP denotes have
T2356 142-155 NN denotes transcriptome
T2357 156-164 NNS denotes analyses
T2358 165-167 TO denotes to
T2359 168-176 VB denotes identify
T2360 177-182 NNS denotes genes
T2361 183-195 RB denotes specifically
T2362 196-205 VBN denotes expressed
T2363 206-208 IN denotes in
T2364 209-211 NN denotes ES
T2365 212-217 NNS denotes cells
T2366 218-221 CC denotes and
T2367 222-227 JJ denotes early
T2368 228-235 NNS denotes embryos
T2369 235-236 . denotes .
T2370 236-429 sentence denotes These analyses, including DNA microarray analyses [7] and expressed sequence tag analyses [8-12], identified several common transcripts, including ESG1 that was also designated dppa5 or ECAT2.
T2371 237-242 DT denotes These
T2372 243-251 NNS denotes analyses
T2373 335-345 VBD denotes identified
T2374 251-253 , denotes ,
T2375 253-262 VBG denotes including
T2376 263-266 NN denotes DNA
T2377 278-286 NNS denotes analyses
T2378 267-277 NN denotes microarray
T2379 287-288 -LRB- denotes [
T2380 288-289 CD denotes 7
T2381 289-290 -RRB- denotes ]
T2382 291-294 CC denotes and
T2383 295-304 VBN denotes expressed
T2384 305-313 NN denotes sequence
T2385 318-326 NNS denotes analyses
T2386 314-317 NN denotes tag
T2387 327-328 -LRB- denotes [
T2388 328-329 CD denotes 8
T2389 329-330 SYM denotes -
T2390 330-332 CD denotes 12
T2391 332-333 -RRB- denotes ]
T2392 333-335 , denotes ,
T2393 346-353 JJ denotes several
T2394 361-372 NNS denotes transcripts
T2395 354-360 JJ denotes common
T2396 372-374 , denotes ,
T2397 374-383 VBG denotes including
T2398 384-388 NN denotes ESG1
T2399 389-393 WDT denotes that
T2400 403-413 VBN denotes designated
T2401 394-397 VBD denotes was
T2402 398-402 RB denotes also
T2403 414-419 NN denotes dppa5
T2404 420-422 CC denotes or
T2405 423-428 NN denotes ECAT2
T2406 428-429 . denotes .
T2407 429-557 sentence denotes ESG1 was originally identified as a transcript Ph34 that was down-regulated by retinoic acid in embryonic carcinoma cells [13].
T2408 430-434 NN denotes ESG1
T2409 450-460 VBN denotes identified
T2410 435-438 VBD denotes was
T2411 439-449 RB denotes originally
T2412 461-463 IN denotes as
T2413 464-465 DT denotes a
T2414 477-481 NN denotes Ph34
T2415 466-476 NN denotes transcript
T2416 482-486 WDT denotes that
T2417 496-505 VBN denotes regulated
T2418 487-490 VBD denotes was
T2419 491-495 RB denotes down
T2420 495-496 HYPH denotes -
T2421 506-508 IN denotes by
T2422 509-517 JJ denotes retinoic
T2423 518-522 NN denotes acid
T2424 523-525 IN denotes in
T2425 526-535 JJ denotes embryonic
T2426 536-545 NN denotes carcinoma
T2427 546-551 NNS denotes cells
T2428 552-553 -LRB- denotes [
T2429 553-555 CD denotes 13
T2430 555-556 -RRB- denotes ]
T2431 556-557 . denotes .
T2432 557-644 sentence denotes The expression of this gene was confined in mice to early embryos and germ cells [14].
T2433 558-561 DT denotes The
T2434 562-572 NN denotes expression
T2435 590-598 VBN denotes confined
T2436 573-575 IN denotes of
T2437 576-580 DT denotes this
T2438 581-585 NN denotes gene
T2439 586-589 VBD denotes was
T2440 599-601 IN denotes in
T2441 602-606 NNS denotes mice
T2442 607-609 IN denotes to
T2443 610-615 JJ denotes early
T2444 616-623 NNS denotes embryos
T2445 624-627 CC denotes and
T2446 628-632 NN denotes germ
T2447 633-638 NNS denotes cells
T2448 639-640 -LRB- denotes [
T2449 640-642 CD denotes 14
T2450 642-643 -RRB- denotes ]
T2451 643-644 . denotes .
T2452 644-771 sentence denotes It is also expressed in pluripotent cells, including ES cells, embryonic germ cells, and multipotent germline stem cells [15].
T2453 645-647 PRP denotes It
T2454 656-665 VBN denotes expressed
T2455 648-650 VBZ denotes is
T2456 651-655 RB denotes also
T2457 666-668 IN denotes in
T2458 669-680 JJ denotes pluripotent
T2459 681-686 NNS denotes cells
T2460 686-688 , denotes ,
T2461 688-697 VBG denotes including
T2462 698-700 NN denotes ES
T2463 701-706 NNS denotes cells
T2464 706-708 , denotes ,
T2465 708-717 JJ denotes embryonic
T2466 723-728 NNS denotes cells
T2467 718-722 NN denotes germ
T2468 728-730 , denotes ,
T2469 730-733 CC denotes and
T2470 734-745 JJ denotes multipotent
T2471 760-765 NNS denotes cells
T2472 746-754 NN denotes germline
T2473 755-759 NN denotes stem
T2474 766-767 -LRB- denotes [
T2475 767-769 CD denotes 15
T2476 769-770 -RRB- denotes ]
T2477 770-771 . denotes .
T2478 771-888 sentence denotes ESG1 encodes a polypeptide of 118 amino acids that contains a single KH domain, which is an RNA-binding domain [16].
T2479 772-776 NN denotes ESG1
T2480 777-784 VBZ denotes encodes
T2481 785-786 DT denotes a
T2482 787-798 NN denotes polypeptide
T2483 799-801 IN denotes of
T2484 802-805 CD denotes 118
T2485 812-817 NNS denotes acids
T2486 806-811 NN denotes amino
T2487 818-822 WDT denotes that
T2488 823-831 VBZ denotes contains
T2489 832-833 DT denotes a
T2490 844-850 NN denotes domain
T2491 834-840 JJ denotes single
T2492 841-843 NN denotes KH
T2493 850-852 , denotes ,
T2494 852-857 WDT denotes which
T2495 858-860 VBZ denotes is
T2496 861-863 DT denotes an
T2497 876-882 NN denotes domain
T2498 864-867 NN denotes RNA
T2499 868-875 VBG denotes binding
T2500 867-868 HYPH denotes -
T2501 883-884 -LRB- denotes [
T2502 884-886 CD denotes 16
T2503 886-887 -RRB- denotes ]
T2504 887-888 . denotes .
T2506 889-891 PRP denotes It
T2507 892-899 VBZ denotes remains
T2508 900-907 JJ denotes unclear
T2509 907-909 , denotes ,
T2510 909-916 RB denotes however
T2511 916-918 , denotes ,
T2512 918-920 IN denotes if
T2513 926-935 VBZ denotes functions
T2514 921-925 NN denotes ESG1
T2515 936-938 IN denotes as
R435 T2327 T2325 prep of,focus
R436 T2328 T2329 det the,field
R437 T2329 T2327 pobj field,of
R438 T2330 T2329 prep of,field
R439 T2331 T2332 compound stem,cell
R440 T2332 T2333 compound cell,biology
R441 T2333 T2330 pobj biology,of
R442 T2334 T2335 punct [,4
R444 T2336 T2337 punct -,6
R445 T2337 T2335 prep 6,4
R446 T2338 T2335 punct ],4
R448 T2341 T2342 aux To,identify
R449 T2342 T2343 advcl identify,utilized
R450 T2344 T2342 dobj molecules,identify
R451 T2345 T2344 relcl essential,molecules
R452 T2346 T2345 prep in,essential
R453 T2347 T2348 compound ES,cells
R454 T2348 T2346 pobj cells,in
R455 T2349 T2345 prep for,essential
R456 T2350 T2351 det these,properties
R457 T2351 T2349 pobj properties,for
R458 T2352 T2343 punct ", ",utilized
R459 T2353 T2354 amod several,groups
R460 T2354 T2343 nsubj groups,utilized
R461 T2355 T2343 aux have,utilized
R462 T2356 T2357 compound transcriptome,analyses
R463 T2357 T2343 dobj analyses,utilized
R464 T2358 T2359 aux to,identify
R465 T2359 T2343 advcl identify,utilized
R466 T2360 T2359 dobj genes,identify
R467 T2361 T2362 advmod specifically,expressed
R468 T2362 T2360 acl expressed,genes
R469 T2363 T2362 prep in,expressed
R470 T2364 T2365 compound ES,cells
R471 T2365 T2363 pobj cells,in
R472 T2366 T2365 cc and,cells
R473 T2367 T2368 amod early,embryos
R474 T2368 T2365 conj embryos,cells
R475 T2369 T2343 punct .,utilized
R476 T2371 T2372 det These,analyses
R477 T2372 T2373 nsubj analyses,identified
R478 T2374 T2372 punct ", ",analyses
R479 T2375 T2372 prep including,analyses
R480 T2376 T2377 compound DNA,analyses
R481 T2377 T2375 pobj analyses,including
R482 T2378 T2377 compound microarray,analyses
R483 T2379 T2380 punct [,7
R484 T2380 T2377 parataxis 7,analyses
R485 T2381 T2380 punct ],7
R486 T2382 T2377 cc and,analyses
R487 T2383 T2384 amod expressed,sequence
R488 T2384 T2385 compound sequence,analyses
R489 T2385 T2377 conj analyses,analyses
R490 T2386 T2385 compound tag,analyses
R491 T2387 T2388 punct [,8
R492 T2388 T2385 parataxis 8,analyses
R493 T2389 T2390 punct -,12
R494 T2390 T2388 prep 12,8
R495 T2391 T2388 punct ],8
R496 T2392 T2373 punct ", ",identified
R497 T2393 T2394 amod several,transcripts
R498 T2394 T2373 dobj transcripts,identified
R499 T2395 T2394 amod common,transcripts
R500 T2396 T2394 punct ", ",transcripts
R501 T2397 T2394 prep including,transcripts
R502 T2398 T2397 pobj ESG1,including
R503 T2399 T2400 dep that,designated
R504 T2400 T2394 relcl designated,transcripts
R505 T2401 T2400 auxpass was,designated
R506 T2402 T2400 advmod also,designated
R507 T2403 T2400 oprd dppa5,designated
R508 T2404 T2403 cc or,dppa5
R509 T2405 T2403 conj ECAT2,dppa5
R510 T2406 T2373 punct .,identified
R511 T2408 T2409 nsubjpass ESG1,identified
R512 T2410 T2409 auxpass was,identified
R513 T2411 T2409 advmod originally,identified
R514 T2412 T2409 prep as,identified
R515 T2413 T2414 det a,Ph34
R516 T2414 T2412 pobj Ph34,as
R517 T2415 T2414 compound transcript,Ph34
R518 T2416 T2417 dep that,regulated
R519 T2417 T2414 relcl regulated,Ph34
R520 T2418 T2417 auxpass was,regulated
R521 T2419 T2417 advmod down,regulated
R522 T2420 T2417 punct -,regulated
R523 T2421 T2417 agent by,regulated
R524 T2422 T2423 amod retinoic,acid
R525 T2423 T2421 pobj acid,by
R526 T2424 T2417 prep in,regulated
R527 T2425 T2426 amod embryonic,carcinoma
R528 T2426 T2427 compound carcinoma,cells
R529 T2427 T2424 pobj cells,in
R530 T2428 T2429 punct [,13
R531 T2429 T2417 parataxis 13,regulated
R532 T2430 T2429 punct ],13
R533 T2431 T2409 punct .,identified
R534 T2433 T2434 det The,expression
R535 T2434 T2435 nsubjpass expression,confined
R536 T2436 T2434 prep of,expression
R537 T2437 T2438 det this,gene
R538 T2438 T2436 pobj gene,of
R539 T2439 T2435 auxpass was,confined
R540 T2440 T2435 prep in,confined
R541 T2441 T2440 pobj mice,in
R542 T2442 T2435 prep to,confined
R543 T2443 T2444 amod early,embryos
R544 T2444 T2442 pobj embryos,to
R545 T2445 T2444 cc and,embryos
R546 T2446 T2447 compound germ,cells
R547 T2447 T2444 conj cells,embryos
R548 T2448 T2449 punct [,14
R549 T2449 T2435 parataxis 14,confined
R550 T2450 T2449 punct ],14
R551 T2451 T2435 punct .,confined
R552 T2453 T2454 nsubjpass It,expressed
R553 T2455 T2454 auxpass is,expressed
R554 T2456 T2454 advmod also,expressed
R555 T2457 T2454 prep in,expressed
R556 T2458 T2459 amod pluripotent,cells
R557 T2459 T2457 pobj cells,in
R558 T2460 T2459 punct ", ",cells
R559 T2461 T2459 prep including,cells
R560 T2462 T2463 compound ES,cells
R561 T2463 T2461 pobj cells,including
R562 T2464 T2463 punct ", ",cells
R563 T2465 T2466 amod embryonic,cells
R564 T2466 T2463 conj cells,cells
R565 T2467 T2466 compound germ,cells
R566 T2468 T2466 punct ", ",cells
R567 T2469 T2466 cc and,cells
R568 T2470 T2471 amod multipotent,cells
R569 T2471 T2466 conj cells,cells
R570 T2472 T2471 compound germline,cells
R571 T2473 T2471 compound stem,cells
R572 T2474 T2475 punct [,15
R573 T2475 T2454 parataxis 15,expressed
R574 T2476 T2475 punct ],15
R575 T2477 T2454 punct .,expressed
R576 T2479 T2480 nsubj ESG1,encodes
R577 T2481 T2482 det a,polypeptide
R578 T2482 T2480 dobj polypeptide,encodes
R579 T2483 T2482 prep of,polypeptide
R580 T2484 T2485 nummod 118,acids
R581 T2485 T2483 pobj acids,of
R582 T2486 T2485 compound amino,acids
R583 T2487 T2488 dep that,contains
R584 T2488 T2482 relcl contains,polypeptide
R585 T2489 T2490 det a,domain
R586 T2490 T2488 dobj domain,contains
R587 T2491 T2490 amod single,domain
R588 T2492 T2490 compound KH,domain
R589 T2493 T2490 punct ", ",domain
R590 T2494 T2495 dep which,is
R591 T2495 T2490 relcl is,domain
R592 T2496 T2497 det an,domain
R593 T2497 T2495 attr domain,is
R594 T2498 T2499 npadvmod RNA,binding
R595 T2499 T2497 amod binding,domain
R596 T2500 T2499 punct -,binding
R597 T2501 T2502 punct [,16
R598 T2502 T2495 parataxis 16,is
R599 T2503 T2502 punct ],16
R600 T2504 T2480 punct .,encodes
R601 T2506 T2507 nsubj It,remains
R602 T2508 T2507 acomp unclear,remains
R603 T2509 T2507 punct ", ",remains
R604 T2510 T2507 advmod however,remains
R605 T2511 T2507 punct ", ",remains
R606 T2512 T2513 mark if,functions
R607 T2513 T2507 ccomp functions,remains
R608 T2514 T2513 nsubj ESG1,functions
R609 T2515 T2513 prep as,functions