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PMC:1420271 / 21058-21475 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11858 37-45 CL:0002322 denotes ES cells
T11859 50-54 PR:000006847 denotes ESG1
T11860 58-66 CL:0002322 denotes ES cells
T11861 84-87 CHEBI:37987 denotes Cy3
T11862 92-95 CHEBI:37989 denotes Cy5
T11863 128-138 GO:0097617 denotes hybridized
T11864 144-149 NCBITaxon:10088 denotes Mouse
T11865 298-311 GO:0097617 denotes Hybridization

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11866 18-21 CHEBI_SO_EXT:RNA denotes RNA
T11867 27-36 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11868 37-45 CL:0002322 denotes ES cells
T11869 40-45 CL_GO_EXT:cell denotes cells
T11870 50-54 PR_EXT:000006847 denotes ESG1
T11871 54-55 SO_EXT:sequence_nullness_or_absence denotes -
T11872 56-57 SO_EXT:sequence_nullness_or_absence denotes -
T11873 58-66 CL:0002322 denotes ES cells
T11874 61-66 CL_GO_EXT:cell denotes cells
T11875 71-78 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T11876 84-87 CHEBI:37987 denotes Cy3
T11877 92-95 CHEBI:37989 denotes Cy5
T11878 128-138 GO:0097617 denotes hybridized
T11879 144-149 NCBITaxon:10088 denotes Mouse
T11880 298-311 GO:0097617 denotes Hybridization
T11881 346-352 SO_EXT:sequence_cloned_entity denotes clones
T11882 407-415 OBI_SO_EXT:gene_or_genetic_investigation_or_genetic_process denotes Genetics

craft-sa-dev

Id Subject Object Predicate Lexical cue
T11883 0-11 NNS denotes Microarrays
T11884 11-110 sentence denotes Total RNA from wild-type ES cells and ESG1-/- ES cells was labeled with Cy3 and Cy5, respectively.
T11885 12-17 JJ denotes Total
T11886 18-21 NN denotes RNA
T11887 71-78 VBN denotes labeled
T11888 22-26 IN denotes from
T11889 27-31 JJ denotes wild
T11890 32-36 NN denotes type
T11891 31-32 HYPH denotes -
T11892 40-45 NNS denotes cells
T11893 37-39 NN denotes ES
T11894 46-49 CC denotes and
T11895 50-54 NN denotes ESG1
T11896 61-66 NNS denotes cells
T11897 54-55 SYM denotes -
T11898 55-56 HYPH denotes /
T11899 56-57 SYM denotes -
T11900 58-60 NN denotes ES
T11901 67-70 VBD denotes was
T11902 79-83 IN denotes with
T11903 84-87 NN denotes Cy3
T11904 88-91 CC denotes and
T11905 92-95 NN denotes Cy5
T11906 95-97 , denotes ,
T11907 97-109 RB denotes respectively
T11908 109-110 . denotes .
T11909 110-225 sentence denotes The samples were hybridized to a Mouse Development Microarray (Algilent) according to the manufacturer's protocol.
T11910 111-114 DT denotes The
T11911 115-122 NNS denotes samples
T11912 128-138 VBN denotes hybridized
T11913 123-127 VBD denotes were
T11914 139-141 IN denotes to
T11915 142-143 DT denotes a
T11916 162-172 NN denotes Microarray
T11917 144-149 NN denotes Mouse
T11918 150-161 NN denotes Development
T11919 173-174 -LRB- denotes (
T11920 174-182 NNP denotes Algilent
T11921 182-183 -RRB- denotes )
T11922 184-193 VBG denotes according
T11923 194-196 IN denotes to
T11924 197-200 DT denotes the
T11925 201-213 NN denotes manufacturer
T11926 216-224 NN denotes protocol
T11927 213-215 POS denotes 's
T11928 224-225 . denotes .
T11929 225-297 sentence denotes Arrays were scanned with a G2565BA Microarray Scanner System (Agilent).
T11930 226-232 NNS denotes Arrays
T11931 238-245 VBN denotes scanned
T11932 233-237 VBD denotes were
T11933 246-250 IN denotes with
T11934 251-252 DT denotes a
T11935 280-286 NN denotes System
T11936 253-260 NN denotes G2565BA
T11937 261-271 NN denotes Microarray
T11938 272-279 NN denotes Scanner
T11939 287-288 -LRB- denotes (
T11940 288-295 NNP denotes Agilent
T11941 295-296 -RRB- denotes )
T11942 296-297 . denotes .
T11943 297-353 sentence denotes Hybridization was repeated with two independent clones.
T11944 298-311 NN denotes Hybridization
T11945 316-324 VBN denotes repeated
T11946 312-315 VBD denotes was
T11947 325-329 IN denotes with
T11948 330-333 CD denotes two
T11949 346-352 NNS denotes clones
T11950 334-345 JJ denotes independent
T11951 352-353 . denotes .
T11952 353-417 sentence denotes Data were analyzed with GeneSprings software (Silico Genetics).
T11953 354-358 NNS denotes Data
T11954 364-372 VBN denotes analyzed
T11955 359-363 VBD denotes were
T11956 373-377 IN denotes with
T11957 378-389 NNP denotes GeneSprings
T11958 390-398 NN denotes software
T11959 399-400 -LRB- denotes (
T11960 407-415 NNP denotes Genetics
T11961 400-406 NNP denotes Silico
T11962 415-416 -RRB- denotes )
T11963 416-417 . denotes .
R3392 T11885 T11886 amod Total,RNA
R3393 T11886 T11887 nsubjpass RNA,labeled
R3394 T11888 T11886 prep from,RNA
R3395 T11889 T11890 amod wild,type
R3396 T11890 T11892 compound type,cells
R3397 T11891 T11890 punct -,type
R3398 T11892 T11888 pobj cells,from
R3399 T11893 T11892 compound ES,cells
R3400 T11894 T11892 cc and,cells
R3401 T11895 T11896 nmod ESG1,cells
R3402 T11896 T11892 conj cells,cells
R3403 T11897 T11895 punct -,ESG1
R3404 T11898 T11895 punct /,ESG1
R3405 T11899 T11895 punct -,ESG1
R3406 T11900 T11896 compound ES,cells
R3407 T11901 T11887 auxpass was,labeled
R3408 T11902 T11887 prep with,labeled
R3409 T11903 T11902 pobj Cy3,with
R3410 T11904 T11903 cc and,Cy3
R3411 T11905 T11903 conj Cy5,Cy3
R3412 T11906 T11887 punct ", ",labeled
R3413 T11907 T11887 advmod respectively,labeled
R3414 T11908 T11887 punct .,labeled
R3415 T11910 T11911 det The,samples
R3416 T11911 T11912 nsubjpass samples,hybridized
R3417 T11913 T11912 auxpass were,hybridized
R3418 T11914 T11912 prep to,hybridized
R3419 T11915 T11916 det a,Microarray
R3420 T11916 T11914 pobj Microarray,to
R3421 T11917 T11916 compound Mouse,Microarray
R3422 T11918 T11916 compound Development,Microarray
R3423 T11919 T11920 punct (,Algilent
R3424 T11920 T11916 parataxis Algilent,Microarray
R3425 T11921 T11920 punct ),Algilent
R3426 T11922 T11912 prep according,hybridized
R3427 T11923 T11922 prep to,according
R3428 T11924 T11925 det the,manufacturer
R3429 T11925 T11926 poss manufacturer,protocol
R3430 T11926 T11923 pobj protocol,to
R3431 T11927 T11925 case 's,manufacturer
R3432 T11928 T11912 punct .,hybridized
R3433 T11930 T11931 nsubjpass Arrays,scanned
R3434 T11932 T11931 auxpass were,scanned
R3435 T11933 T11931 prep with,scanned
R3436 T11934 T11935 det a,System
R3437 T11935 T11933 pobj System,with
R3438 T11936 T11935 compound G2565BA,System
R3439 T11937 T11935 compound Microarray,System
R3440 T11938 T11935 compound Scanner,System
R3441 T11939 T11940 punct (,Agilent
R3442 T11940 T11935 parataxis Agilent,System
R3443 T11941 T11940 punct ),Agilent
R3444 T11942 T11931 punct .,scanned
R3445 T11944 T11945 nsubjpass Hybridization,repeated
R3446 T11946 T11945 auxpass was,repeated
R3447 T11947 T11945 prep with,repeated
R3448 T11948 T11949 nummod two,clones
R3449 T11949 T11947 pobj clones,with
R3450 T11950 T11949 amod independent,clones
R3451 T11951 T11945 punct .,repeated
R3452 T11953 T11954 nsubjpass Data,analyzed
R3453 T11955 T11954 auxpass were,analyzed
R3454 T11956 T11954 prep with,analyzed
R3455 T11957 T11958 compound GeneSprings,software
R3456 T11958 T11956 pobj software,with
R3457 T11959 T11960 punct (,Genetics
R3458 T11960 T11958 parataxis Genetics,software
R3459 T11961 T11960 compound Silico,Genetics
R3460 T11962 T11960 punct ),Genetics
R3461 T11963 T11954 punct .,analyzed