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PMC:1420271 / 12718-13168 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13911 10-14 SO:0000704 denotes Gene
T13912 10-25 GO:0010467 denotes Gene expression
T13913 38-42 PR:000006847 denotes ESG1
T13914 48-56 CL:0002322 denotes ES cells
T13915 111-119 CL:0002322 denotes ES cells
T13916 124-128 PR:000006847 denotes ESG1
T13917 134-142 CL:0002322 denotes ES cells
T13918 161-164 CHEBI:37987 denotes Cy3
T13919 169-172 CHEBI:37989 denotes Cy5
T13920 201-211 GO:0097617 denotes hybridized
T13921 223-228 NCBITaxon:10088 denotes Mouse
T13922 350-354 PR:000006847 denotes ESG1
T13923 362-366 PR:000006847 denotes ESG1
T13924 394-404 GO:0010467 denotes expression
T13925 408-412 PR:000006847 denotes ESG1
T13926 414-418 PR:000013044 denotes Oct3
T13927 425-429 PR:000005257 denotes CDK4

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13928 10-14 SO_EXT:0000704 denotes Gene
T13929 10-25 GO:0010467 denotes Gene expression
T13930 38-42 PR_EXT:000006847 denotes ESG1
T13931 43-47 SO_EXT:sequence_nullness denotes null
T13932 48-56 CL:0002322 denotes ES cells
T13933 51-56 CL_GO_EXT:cell denotes cells
T13934 61-64 CHEBI_SO_EXT:DNA denotes DNA
T13935 92-95 CHEBI_SO_EXT:RNA denotes RNA
T13936 101-110 SO_EXT:wild_type_entity_or_quality denotes wild-type
T13937 111-119 CL:0002322 denotes ES cells
T13938 114-119 CL_GO_EXT:cell denotes cells
T13939 124-128 PR_EXT:000006847 denotes ESG1
T13940 129-133 SO_EXT:sequence_nullness denotes null
T13941 134-142 CL:0002322 denotes ES cells
T13942 137-142 CL_GO_EXT:cell denotes cells
T13943 148-155 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T13944 161-164 CHEBI:37987 denotes Cy3
T13945 169-172 CHEBI:37989 denotes Cy5
T13946 201-211 GO:0097617 denotes hybridized
T13947 223-228 NCBITaxon:10088 denotes Mouse
T13948 288-294 SO_EXT:sequence_cloned_entity denotes clones
T13949 332-336 CL_GO_EXT:cell denotes Cell
T13950 350-354 PR_EXT:000006847 denotes ESG1
T13951 354-355 SO_EXT:normal_or_wild_type_or_present denotes +
T13952 356-357 SO_EXT:sequence_nullness_or_absence denotes -
T13953 362-366 PR_EXT:000006847 denotes ESG1
T13954 366-367 SO_EXT:sequence_nullness_or_absence denotes -
T13955 368-369 SO_EXT:sequence_nullness_or_absence denotes -
T13956 370-375 CL_GO_EXT:cell denotes cells
T13957 394-404 GO:0010467 denotes expression
T13958 408-412 PR_EXT:000006847 denotes ESG1
T13959 414-418 PR_EXT:000013044 denotes Oct3
T13960 425-429 PR_EXT:000005257 denotes CDK4

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13961 10-14 NN denotes Gene
T13962 15-25 NN denotes expression
T13963 26-34 NNS denotes analyses
T13964 35-37 IN denotes of
T13965 38-42 NN denotes ESG1
T13966 43-47 JJ denotes null
T13967 42-43 HYPH denotes -
T13968 51-56 NNS denotes cells
T13969 48-50 NN denotes ES
T13970 56-57 . denotes .
T13971 57-85 sentence denotes A) DNA microarray analyses.
T13972 58-59 LS denotes A
T13973 76-84 NNS denotes analyses
T13974 59-60 -RRB- denotes )
T13975 61-64 NN denotes DNA
T13976 65-75 NN denotes microarray
T13977 84-85 . denotes .
T13978 85-187 sentence denotes Total RNA from wild-type ES cells and ESG1-null ES cells were labeled with Cy3 and Cy5, respectively.
T13979 86-91 JJ denotes Total
T13980 92-95 NN denotes RNA
T13981 148-155 VBN denotes labeled
T13982 96-100 IN denotes from
T13983 101-105 JJ denotes wild
T13984 106-110 NN denotes type
T13985 105-106 HYPH denotes -
T13986 114-119 NNS denotes cells
T13987 111-113 NN denotes ES
T13988 120-123 CC denotes and
T13989 124-128 NN denotes ESG1
T13990 129-133 JJ denotes null
T13991 128-129 HYPH denotes -
T13992 137-142 NNS denotes cells
T13993 134-136 NN denotes ES
T13994 143-147 VBD denotes were
T13995 156-160 IN denotes with
T13996 161-164 NN denotes Cy3
T13997 165-168 CC denotes and
T13998 169-172 NN denotes Cy5
T13999 172-174 , denotes ,
T14000 174-186 RB denotes respectively
T14001 186-187 . denotes .
T14002 187-255 sentence denotes Samples were hybridized to Agilent Mouse Developmental Microarrays.
T14003 188-195 NNS denotes Samples
T14004 201-211 VBN denotes hybridized
T14005 196-200 VBD denotes were
T14006 212-214 IN denotes to
T14007 215-222 NNP denotes Agilent
T14008 243-254 NNS denotes Microarrays
T14009 223-228 NN denotes Mouse
T14010 229-242 JJ denotes Developmental
T14011 254-255 . denotes .
T14012 255-305 sentence denotes The averages of two independent clones are shown.
T14013 256-259 DT denotes The
T14014 260-268 NNS denotes averages
T14015 299-304 VBN denotes shown
T14016 269-271 IN denotes of
T14017 272-275 CD denotes two
T14018 288-294 NNS denotes clones
T14019 276-287 JJ denotes independent
T14020 295-298 VBP denotes are
T14021 304-305 . denotes .
T14022 305-331 sentence denotes B) Western blot analyses.
T14023 306-307 LS denotes B
T14024 322-330 NNS denotes analyses
T14025 307-308 -RRB- denotes )
T14026 309-316 NNP denotes Western
T14027 317-321 NN denotes blot
T14028 330-331 . denotes .
T14029 331-450 sentence denotes Cell lysates from ESG1+/- and ESG1-/- cells were examined for expression of ESG1, Oct3/4 and CDK4 with immunoblotting.
T14030 332-336 NN denotes Cell
T14031 337-344 NNS denotes lysates
T14032 381-389 VBN denotes examined
T14033 345-349 IN denotes from
T14034 350-354 NN denotes ESG1
T14035 370-375 NNS denotes cells
T14036 354-355 SYM denotes +
T14037 355-356 HYPH denotes /
T14038 356-357 SYM denotes -
T14039 358-361 CC denotes and
T14040 362-366 NN denotes ESG1
T14041 366-367 SYM denotes -
T14042 367-368 HYPH denotes /
T14043 368-369 SYM denotes -
T14044 376-380 VBD denotes were
T14045 390-393 IN denotes for
T14046 394-404 NN denotes expression
T14047 405-407 IN denotes of
T14048 408-412 NN denotes ESG1
T14049 412-414 , denotes ,
T14050 414-418 NN denotes Oct3
T14051 418-419 HYPH denotes /
T14052 419-420 CD denotes 4
T14053 421-424 CC denotes and
T14054 425-429 NN denotes CDK4
T14055 430-434 IN denotes with
T14056 435-449 NN denotes immunoblotting
T14057 449-450 . denotes .
R3959 T13961 T13962 compound Gene,expression
R3960 T13962 T13963 compound expression,analyses
R3961 T13964 T13963 prep of,analyses
R3962 T13965 T13966 npadvmod ESG1,null
R3963 T13966 T13968 amod null,cells
R3964 T13967 T13966 punct -,null
R3965 T13968 T13964 pobj cells,of
R3966 T13969 T13968 compound ES,cells
R3967 T13970 T13963 punct .,analyses
R3968 T13972 T13973 meta A,analyses
R3969 T13974 T13972 punct ),A
R3970 T13975 T13973 compound DNA,analyses
R3971 T13976 T13973 compound microarray,analyses
R3972 T13977 T13973 punct .,analyses
R3973 T13979 T13980 amod Total,RNA
R3974 T13980 T13981 nsubjpass RNA,labeled
R3975 T13982 T13980 prep from,RNA
R3976 T13983 T13984 amod wild,type
R3977 T13984 T13986 compound type,cells
R3978 T13985 T13984 punct -,type
R3979 T13986 T13982 pobj cells,from
R3980 T13987 T13986 compound ES,cells
R3981 T13988 T13986 cc and,cells
R3982 T13989 T13990 npadvmod ESG1,null
R3983 T13990 T13992 amod null,cells
R3984 T13991 T13990 punct -,null
R3985 T13992 T13986 conj cells,cells
R3986 T13993 T13992 compound ES,cells
R3987 T13994 T13981 auxpass were,labeled
R3988 T13995 T13981 prep with,labeled
R3989 T13996 T13995 pobj Cy3,with
R3990 T13997 T13996 cc and,Cy3
R3991 T13998 T13996 conj Cy5,Cy3
R3992 T13999 T13981 punct ", ",labeled
R3993 T14000 T13981 advmod respectively,labeled
R3994 T14001 T13981 punct .,labeled
R3995 T14003 T14004 nsubjpass Samples,hybridized
R3996 T14005 T14004 auxpass were,hybridized
R3997 T14006 T14004 prep to,hybridized
R3998 T14007 T14008 nmod Agilent,Microarrays
R3999 T14008 T14006 pobj Microarrays,to
R4000 T14009 T14008 nmod Mouse,Microarrays
R4001 T14010 T14008 amod Developmental,Microarrays
R4002 T14011 T14004 punct .,hybridized
R4003 T14013 T14014 det The,averages
R4004 T14014 T14015 nsubjpass averages,shown
R4005 T14016 T14014 prep of,averages
R4006 T14017 T14018 nummod two,clones
R4007 T14018 T14016 pobj clones,of
R4008 T14019 T14018 amod independent,clones
R4009 T14020 T14015 auxpass are,shown
R4010 T14021 T14015 punct .,shown
R4011 T14023 T14024 meta B,analyses
R4012 T14025 T14023 punct ),B
R4013 T14026 T14027 compound Western,blot
R4014 T14027 T14024 compound blot,analyses
R4015 T14028 T14024 punct .,analyses
R4016 T14030 T14031 compound Cell,lysates
R4017 T14031 T14032 nsubjpass lysates,examined
R4018 T14033 T14031 prep from,lysates
R4019 T14034 T14035 nmod ESG1,cells
R4020 T14035 T14033 pobj cells,from
R4021 T14036 T14034 punct +,ESG1
R4022 T14037 T14034 punct /,ESG1
R4023 T14038 T14034 punct -,ESG1
R4024 T14039 T14034 cc and,ESG1
R4025 T14040 T14034 conj ESG1,ESG1
R4026 T14041 T14040 punct -,ESG1
R4027 T14042 T14040 punct /,ESG1
R4028 T14043 T14040 punct -,ESG1
R4029 T14044 T14032 auxpass were,examined
R4030 T14045 T14032 prep for,examined
R4031 T14046 T14045 pobj expression,for
R4032 T14047 T14046 prep of,expression
R4033 T14048 T14047 pobj ESG1,of
R4034 T14049 T14048 punct ", ",ESG1
R4035 T14050 T14048 conj Oct3,ESG1
R4036 T14051 T14050 punct /,Oct3
R4037 T14052 T14050 nummod 4,Oct3
R4038 T14053 T14050 cc and,Oct3
R4039 T14054 T14050 conj CDK4,Oct3
R4040 T14055 T14032 prep with,examined
R4041 T14056 T14055 pobj immunoblotting,with
R4042 T14057 T14032 punct .,examined