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PMC:138691 / 45-763 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T189 233-267 GO:0000724 denotes repair of DNA double-strand breaks
T190 216-231 GO_SO_EXT:sequence_rearrangement_process denotes recombinational
T191 216-231 _FRAGMENT denotes recombinational
T192 243-246 CHEBI_SO_EXT:DNA denotes DNA
T193 350-355 PR_EXT:000004804 denotes BRCA2
T194 382-397 GO_SO_EXT:sequence_rearrangement_process denotes recombinational
T195 382-404 GO:0000725 denotes recombinational repair
T196 406-411 PR_EXT:000004804 denotes BRCA2
T197 435-448 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T198 481-491 NCBITaxon:2759 denotes eukaryotic
T199 492-503 GO_EXT:recombinase denotes recombinase
T200 504-509 PR_EXT:000013672 denotes RAD51
T201 687-692 PR_EXT:000004804 denotes BRCA2
T202 696-701 PR_EXT:000013672 denotes RAD51
T203 711-717 GO:0006281 denotes repair
T181 67-73 UBERON:0000310 denotes breast
T182 96-100 SO_EXT:0000704 denotes gene
T183 101-106 PR_EXT:000004804 denotes BRCA2
T184 110-113 CHEBI_SO_EXT:DNA denotes DNA
T185 110-120 GO:0006281 denotes DNA repair
T186 145-152 SO_EXT:0000704 denotes genetic
T187 187-192 PR_EXT:000004804 denotes BRCA2
T188 196-214 _FRAGMENT denotes homology-dependent
R133 T189 T188 _lexicallyChainedTo repair of DNA double-strand breaks,homology-dependent
R134 T189 T191 _lexicallyChainedTo repair of DNA double-strand breaks,recombinational

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19 67-73 UBERON:0000310 denotes breast
T20 96-100 SO:0000704 denotes gene
T21 101-106 PR:000004804 denotes BRCA2
T22 110-120 GO:0006281 denotes DNA repair
T23 145-152 SO:0000704 denotes genetic
T24 187-192 PR:000004804 denotes BRCA2
T25 196-214 _FRAGMENT denotes homology-dependent
T26 233-267 GO:0000724 denotes repair of DNA double-strand breaks
T27 216-231 _FRAGMENT denotes recombinational
T28 350-355 PR:000004804 denotes BRCA2
T29 382-404 GO:0000725 denotes recombinational repair
T30 406-411 PR:000004804 denotes BRCA2
T31 481-491 NCBITaxon:2759 denotes eukaryotic
T32 504-509 PR:000013672 denotes RAD51
T33 687-692 PR:000004804 denotes BRCA2
T34 696-701 PR:000013672 denotes RAD51
T35 711-717 GO:0006281 denotes repair
R1 T26 T25 _lexicallyChainedTo repair of DNA double-strand breaks,homology-dependent
R2 T26 T27 _lexicallyChainedTo repair of DNA double-strand breaks,recombinational

craft-sa-dev

Id Subject Object Predicate Lexical cue
T42 0-121 sentence denotes Two recent papers provide new evidence relevant to the role of the breast cancer susceptibility gene BRCA2 in DNA repair.
T43 0-3 CD denotes Two
T44 11-17 NNS denotes papers
T45 4-10 JJ denotes recent
T46 18-25 VBP denotes provide
T47 26-29 JJ denotes new
T48 30-38 NN denotes evidence
T49 39-47 JJ denotes relevant
T50 48-50 IN denotes to
T51 51-54 DT denotes the
T52 55-59 NN denotes role
T53 60-62 IN denotes of
T54 63-66 DT denotes the
T55 96-100 NN denotes gene
T56 67-73 NN denotes breast
T57 74-80 NN denotes cancer
T58 81-95 NN denotes susceptibility
T59 101-106 NN denotes BRCA2
T60 107-109 IN denotes in
T61 110-113 NN denotes DNA
T62 114-120 NN denotes repair
T63 120-121 . denotes .
T64 121-268 sentence denotes Moynahan et al provide genetic data indicating a requirement for BRCA2 in homology-dependent (recombinational) repair of DNA double-strand breaks.
T65 122-130 NNP denotes Moynahan
T66 137-144 VBP denotes provide
T67 131-133 FW denotes et
T68 134-136 FW denotes al
T69 145-152 JJ denotes genetic
T70 153-157 NNS denotes data
T71 158-168 VBG denotes indicating
T72 169-170 DT denotes a
T73 171-182 NN denotes requirement
T74 183-186 IN denotes for
T75 187-192 NN denotes BRCA2
T76 193-195 IN denotes in
T77 196-204 JJ denotes homology
T78 205-214 JJ denotes dependent
T79 204-205 HYPH denotes -
T80 216-231 JJ denotes recombinational
T81 215-216 -LRB- denotes (
T82 233-239 NN denotes repair
T83 231-232 -RRB- denotes )
T84 240-242 IN denotes of
T85 243-246 NN denotes DNA
T86 261-267 NNS denotes breaks
T87 247-253 JJ denotes double
T88 254-260 NN denotes strand
T89 253-254 HYPH denotes -
T90 267-268 . denotes .
T91 268-405 sentence denotes The second paper, by Davies et al, begins to address the mechanism through which BRCA2 makes its contribution to recombinational repair.
T92 269-272 DT denotes The
T93 280-285 NN denotes paper
T94 273-279 JJ denotes second
T95 304-310 VBZ denotes begins
T96 285-287 , denotes ,
T97 287-289 IN denotes by
T98 290-296 NNP denotes Davies
T99 297-299 FW denotes et
T100 300-302 FW denotes al
T101 302-304 , denotes ,
T102 311-313 TO denotes to
T103 314-321 VB denotes address
T104 322-325 DT denotes the
T105 326-335 NN denotes mechanism
T106 336-343 IN denotes through
T107 356-361 VBZ denotes makes
T108 344-349 WDT denotes which
T109 350-355 NN denotes BRCA2
T110 362-365 PRP$ denotes its
T111 366-378 NN denotes contribution
T112 379-381 IN denotes to
T113 382-397 JJ denotes recombinational
T114 398-404 NN denotes repair
T115 404-405 . denotes .
T116 405-518 sentence denotes BRCA2 appears to function in recombination via interactions with the major eukaryotic recombinase RAD51 [1,2,3].
T117 406-411 NN denotes BRCA2
T118 412-419 VBZ denotes appears
T119 420-422 TO denotes to
T120 423-431 VB denotes function
T121 432-434 IN denotes in
T122 435-448 NN denotes recombination
T123 449-452 IN denotes via
T124 453-465 NNS denotes interactions
T125 466-470 IN denotes with
T126 471-474 DT denotes the
T127 492-503 NN denotes recombinase
T128 475-480 JJ denotes major
T129 481-491 JJ denotes eukaryotic
T130 504-509 NN denotes RAD51
T131 510-511 -LRB- denotes [
T132 515-516 CD denotes 3
T133 511-512 CD denotes 1
T134 512-513 , denotes ,
T135 513-514 CD denotes 2
T136 514-515 , denotes ,
T137 516-517 -RRB- denotes ]
T138 517-518 . denotes .
T139 518-718 sentence denotes We briefly review the context in which the two studies were carried out, we comment on the results presented, and we discuss models designed to account for the role of BRCA2 in RAD51–mediated repair.
T140 519-521 PRP denotes We
T141 530-536 VBP denotes review
T142 522-529 RB denotes briefly
T143 537-540 DT denotes the
T144 541-548 NN denotes context
T145 549-551 IN denotes in
T146 579-586 VBN denotes carried
T147 552-557 WDT denotes which
T148 558-561 DT denotes the
T149 566-573 NNS denotes studies
T150 562-565 CD denotes two
T151 574-578 VBD denotes were
T152 587-590 RP denotes out
T153 590-592 , denotes ,
T154 592-594 PRP denotes we
T155 595-602 VBP denotes comment
T156 603-605 IN denotes on
T157 606-609 DT denotes the
T158 610-617 NNS denotes results
T159 618-627 VBN denotes presented
T160 627-629 , denotes ,
T161 629-632 CC denotes and
T162 633-635 PRP denotes we
T163 636-643 VBP denotes discuss
T164 644-650 NNS denotes models
T165 651-659 VBN denotes designed
T166 660-662 TO denotes to
T167 663-670 VB denotes account
T168 671-674 IN denotes for
T169 675-678 DT denotes the
T170 679-683 NN denotes role
T171 684-686 IN denotes of
T172 687-692 NN denotes BRCA2
T173 693-695 IN denotes in
T174 696-701 NN denotes RAD51
T175 702-710 VBN denotes mediated
T176 701-702 HYPH denotes –
T177 711-717 NN denotes repair
T178 717-718 . denotes .
R13 T51 T52 det the,role
R14 T52 T50 pobj role,to
R15 T53 T52 prep of,role
R16 T54 T55 det the,gene
R17 T55 T53 pobj gene,of
R18 T56 T57 compound breast,cancer
R19 T57 T58 compound cancer,susceptibility
R20 T58 T55 compound susceptibility,gene
R21 T59 T55 appos BRCA2,gene
R22 T60 T52 prep in,role
R23 T61 T62 compound DNA,repair
R24 T62 T60 pobj repair,in
R25 T63 T46 punct .,provide
R26 T65 T66 nsubj Moynahan,provide
R27 T67 T68 advmod et,al
R28 T68 T65 advmod al,Moynahan
R29 T69 T70 amod genetic,data
R30 T70 T66 dobj data,provide
R31 T71 T70 acl indicating,data
R32 T72 T73 det a,requirement
R33 T73 T71 dobj requirement,indicating
R34 T74 T73 prep for,requirement
R35 T75 T74 pobj BRCA2,for
R36 T76 T73 prep in,requirement
R37 T77 T78 amod homology,dependent
R38 T78 T80 amod dependent,recombinational
R39 T79 T78 punct -,dependent
R40 T80 T82 amod recombinational,repair
R41 T81 T80 punct (,recombinational
R42 T82 T76 pobj repair,in
R43 T83 T82 punct ),repair
R44 T84 T82 prep of,repair
R45 T85 T86 nmod DNA,breaks
R46 T86 T84 pobj breaks,of
R47 T87 T88 amod double,strand
R48 T88 T86 compound strand,breaks
R49 T89 T88 punct -,strand
R50 T90 T66 punct .,provide
R51 T92 T93 det The,paper
R52 T93 T95 nsubj paper,begins
R53 T94 T93 amod second,paper
R54 T96 T93 punct ", ",paper
R55 T97 T93 prep by,paper
R56 T98 T97 pobj Davies,by
R57 T99 T100 advmod et,al
R58 T100 T98 advmod al,Davies
R59 T101 T95 punct ", ",begins
R60 T102 T103 aux to,address
R61 T103 T95 xcomp address,begins
R62 T104 T105 det the,mechanism
R63 T105 T103 dobj mechanism,address
R64 T106 T107 prep through,makes
R66 T108 T106 pobj which,through
R67 T109 T107 nsubj BRCA2,makes
R68 T110 T111 poss its,contribution
R69 T111 T107 dobj contribution,makes
R70 T112 T111 prep to,contribution
R71 T113 T114 amod recombinational,repair
R72 T114 T112 pobj repair,to
R73 T115 T95 punct .,begins
R74 T117 T118 nsubj BRCA2,appears
R75 T119 T120 aux to,function
R76 T120 T118 xcomp function,appears
R77 T121 T120 prep in,function
R78 T122 T121 pobj recombination,in
R79 T123 T120 prep via,function
R80 T124 T123 pobj interactions,via
R81 T125 T124 prep with,interactions
R82 T126 T127 det the,recombinase
R84 T128 T127 amod major,recombinase
R85 T129 T127 amod eukaryotic,recombinase
R86 T130 T127 appos RAD51,recombinase
R87 T131 T132 punct [,3
R88 T132 T118 parataxis 3,appears
R89 T133 T132 nummod 1,3
R90 T134 T132 punct ",",3
R91 T135 T132 nummod 2,3
R92 T136 T132 punct ",",3
R93 T137 T132 punct ],3
R94 T138 T118 punct .,appears
R95 T140 T141 nsubj We,review
R96 T142 T141 advmod briefly,review
R97 T143 T144 det the,context
R98 T144 T141 dobj context,review
R99 T145 T146 prep in,carried
R100 T146 T144 relcl carried,context
R101 T147 T145 pobj which,in
R102 T148 T149 det the,studies
R103 T149 T146 nsubjpass studies,carried
R104 T150 T149 nummod two,studies
R105 T151 T146 auxpass were,carried
R106 T152 T146 prt out,carried
R107 T153 T141 punct ", ",review
R108 T154 T155 nsubj we,comment
R109 T155 T141 conj comment,review
R110 T156 T155 prep on,comment
R111 T157 T158 det the,results
R112 T158 T156 pobj results,on
R113 T159 T158 acl presented,results
R114 T160 T155 punct ", ",comment
R115 T161 T155 cc and,comment
R116 T162 T163 nsubj we,discuss
R117 T163 T155 conj discuss,comment
R118 T164 T163 dobj models,discuss
R119 T165 T164 acl designed,models
R120 T166 T167 aux to,account
R121 T167 T165 advcl account,designed
R122 T168 T167 prep for,account
R123 T169 T170 det the,role
R124 T170 T168 pobj role,for
R125 T171 T170 prep of,role
R126 T172 T171 pobj BRCA2,of
R127 T173 T170 prep in,role
R128 T174 T175 npadvmod RAD51,mediated
R129 T175 T177 amod mediated,repair
R130 T176 T175 punct –,mediated
R131 T177 T173 pobj repair,in
R132 T178 T163 punct .,discuss
R6 T43 T44 nummod Two,papers
R7 T44 T46 nsubj papers,provide
R8 T45 T44 amod recent,papers
R9 T47 T48 amod new,evidence
R10 T48 T46 dobj evidence,provide
R11 T49 T48 amod relevant,evidence
R12 T50 T49 prep to,relevant
R65 T107 T105 relcl makes,mechanism
R83 T127 T125 pobj recombinase,with