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PMC:1382200 / 855-1332 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T557 110-115 NCBITaxon:10088 denotes mouse
T558 116-121 PR:000005015 denotes Capn2
T559 122-126 SO:0000704 denotes gene
T560 130-139 UBERON:0000922 denotes embryonic
T561 130-151 CL:0002322 denotes embryonic stems cells
T562 180-186 SO:0001023 denotes allele
T563 199-204 NCBITaxon:10088 denotes mouse
T564 240-247 NCBITaxon:33208 denotes animals
T565 302-311 GO:0007566 denotes implanted
T566 312-319 UBERON:0000922 denotes embryos
T567 389-401 GO:0007566 denotes implantation
T568 409-416 UBERON:0000922 denotes embryos
T569 438-444 UBERON:0000085 denotes morula
T570 460-470 UBERON:0000358 denotes blastocyts

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T629 68-75 SO_EXT:sequence_deletion_process denotes deleted
T630 89-102 SO_EXT:coding_sequence denotes coding region
T631 110-115 NCBITaxon:10088 denotes mouse
T632 116-121 PR_EXT:000005015 denotes Capn2
T633 122-126 SO_EXT:0000704 denotes gene
T634 130-139 UBERON:0000922 denotes embryonic
T635 130-151 CL:0002322 denotes embryonic stems cells
T636 146-151 CL_GO_EXT:cell denotes cells
T637 173-179 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T638 180-186 SO_EXT:0001023 denotes allele
T639 199-204 NCBITaxon:10088 denotes mouse
T640 215-223 GO_EXT:breeding denotes Breeding
T641 240-247 NCBITaxon:33208 denotes animals
T642 277-283 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T643 302-311 GO:0007566 denotes implanted
T644 312-319 UBERON:0000922 denotes embryos
T645 389-401 GO:0007566 denotes implantation
T646 402-408 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T647 409-416 UBERON:0000922 denotes embryos
T648 438-444 UBERON:0000085 denotes morula
T649 460-470 UBERON:0000358 denotes blastocyts

craft-sa-dev

Id Subject Object Predicate Lexical cue
T829 0-7 NNS denotes Results
T830 7-214 sentence denotes To distinguish between the alternatives described above, we deleted an essential coding region in the mouse Capn2 gene in embryonic stems cells and transmitted this mutant allele through the mouse germline.
T831 8-10 TO denotes To
T832 11-22 VB denotes distinguish
T833 68-75 VBD denotes deleted
T834 23-30 IN denotes between
T835 31-34 DT denotes the
T836 35-47 NNS denotes alternatives
T837 48-57 VBN denotes described
T838 58-63 RB denotes above
T839 63-65 , denotes ,
T840 65-67 PRP denotes we
T841 76-78 DT denotes an
T842 96-102 NN denotes region
T843 79-88 JJ denotes essential
T844 89-95 NN denotes coding
T845 103-105 IN denotes in
T846 106-109 DT denotes the
T847 122-126 NN denotes gene
T848 110-115 NN denotes mouse
T849 116-121 NN denotes Capn2
T850 127-129 IN denotes in
T851 130-139 JJ denotes embryonic
T852 146-151 NNS denotes cells
T853 140-145 VBZ denotes stems
T854 152-155 CC denotes and
T855 156-167 VBN denotes transmitted
T856 168-172 DT denotes this
T857 180-186 NN denotes allele
T858 173-179 NN denotes mutant
T859 187-194 IN denotes through
T860 195-198 DT denotes the
T861 205-213 NN denotes germline
T862 199-204 NN denotes mouse
T863 213-214 . denotes .
T864 214-320 sentence denotes Breeding of heterozygous animals failed to produce homozygous mutant live offspring or implanted embryos.
T865 215-223 NN denotes Breeding
T866 248-254 VBD denotes failed
T867 224-226 IN denotes of
T868 227-239 JJ denotes heterozygous
T869 240-247 NNS denotes animals
T870 255-257 TO denotes to
T871 258-265 VB denotes produce
T872 266-276 JJ denotes homozygous
T873 289-298 NN denotes offspring
T874 277-283 NN denotes mutant
T875 284-288 JJ denotes live
T876 299-301 CC denotes or
T877 302-311 VBN denotes implanted
T878 312-319 NNS denotes embryos
T879 319-320 . denotes .
T880 320-477 sentence denotes A nested PCR genotyping protocol was established, and homozygous preimplantation mutant embryos were detected at the morula but not at the blastocyts stage.
T881 321-322 DT denotes A
T882 345-353 NN denotes protocol
T883 323-329 VBN denotes nested
T884 330-333 NN denotes PCR
T885 334-344 NN denotes genotyping
T886 358-369 VBN denotes established
T887 354-357 VBD denotes was
T888 369-371 , denotes ,
T889 371-374 CC denotes and
T890 375-385 JJ denotes homozygous
T891 409-416 NNS denotes embryos
T892 386-401 NN denotes preimplantation
T893 402-408 NN denotes mutant
T894 422-430 VBN denotes detected
T895 417-421 VBD denotes were
T896 431-433 IN denotes at
T897 434-437 DT denotes the
T898 438-444 NN denotes morula
T899 445-448 CC denotes but
T900 449-452 RB denotes not
T901 453-455 IN denotes at
T902 456-459 DT denotes the
T903 460-470 NNS denotes blastocyts
T904 471-476 NN denotes stage
T905 476-477 . denotes .
R152 T831 T832 aux To,distinguish
R153 T832 T833 advcl distinguish,deleted
R154 T834 T832 prep between,distinguish
R155 T835 T836 det the,alternatives
R156 T836 T834 pobj alternatives,between
R157 T837 T836 acl described,alternatives
R158 T838 T837 advmod above,described
R159 T839 T833 punct ", ",deleted
R160 T840 T833 nsubj we,deleted
R161 T841 T842 det an,region
R162 T842 T833 dobj region,deleted
R163 T843 T842 amod essential,region
R164 T844 T842 compound coding,region
R165 T845 T842 prep in,region
R166 T846 T847 det the,gene
R167 T847 T845 pobj gene,in
R168 T848 T847 compound mouse,gene
R169 T849 T847 compound Capn2,gene
R170 T850 T833 prep in,deleted
R171 T851 T852 amod embryonic,cells
R173 T853 T852 nmod stems,cells
R174 T854 T833 cc and,deleted
R175 T855 T833 conj transmitted,deleted
R176 T856 T857 det this,allele
R178 T858 T857 compound mutant,allele
R179 T859 T855 prep through,transmitted
R180 T860 T861 det the,germline
R182 T862 T861 compound mouse,germline
R183 T863 T833 punct .,deleted
R184 T865 T866 nsubj Breeding,failed
R185 T867 T865 prep of,Breeding
R186 T868 T869 amod heterozygous,animals
R187 T869 T867 pobj animals,of
R188 T870 T871 aux to,produce
R189 T871 T866 xcomp produce,failed
R190 T872 T873 amod homozygous,offspring
R191 T873 T871 dobj offspring,produce
R192 T874 T873 nmod mutant,offspring
R193 T875 T873 amod live,offspring
R194 T876 T873 cc or,offspring
R195 T877 T878 amod implanted,embryos
R196 T878 T873 conj embryos,offspring
R197 T879 T866 punct .,failed
R198 T881 T882 det A,protocol
R199 T882 T886 nsubjpass protocol,established
R200 T883 T882 amod nested,protocol
R201 T884 T882 compound PCR,protocol
R202 T885 T882 compound genotyping,protocol
R203 T887 T886 auxpass was,established
R204 T888 T886 punct ", ",established
R205 T889 T886 cc and,established
R206 T890 T891 amod homozygous,embryos
R207 T891 T894 nsubjpass embryos,detected
R208 T892 T891 compound preimplantation,embryos
R209 T893 T891 compound mutant,embryos
R211 T895 T894 auxpass were,detected
R212 T896 T894 prep at,detected
R213 T897 T898 det the,morula
R214 T898 T896 pobj morula,at
R215 T899 T894 cc but,detected
R216 T900 T894 conj not,detected
R217 T901 T900 prep at,not
R218 T902 T903 det the,blastocyts
R219 T903 T901 pobj blastocyts,at
R220 T904 T900 dobj stage,not
R221 T905 T894 punct .,detected
R172 T852 T850 pobj cells,in
R177 T857 T855 dobj allele,transmitted
R181 T861 T859 pobj germline,through
R210 T894 T886 conj detected,established