
PMC:1382200 / 8240-9523
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21151 | 0-16 | NN | denotes | Characterization |
T21152 | 17-19 | IN | denotes | of |
T21153 | 20-28 | VBN | denotes | targeted |
T21154 | 37-42 | NNS | denotes | lines |
T21155 | 29-31 | NN | denotes | ES |
T21156 | 32-36 | NN | denotes | cell |
T21157 | 42-43 | . | denotes | . |
T21158 | 43-131 | sentence | denotes | (A) Targeted disruption of the Capn2 locus was detected initially by Southern blotting. |
T21159 | 44-45 | -LRB- | denotes | ( |
T21160 | 45-46 | LS | denotes | A |
T21161 | 91-99 | VBN | denotes | detected |
T21162 | 46-47 | -RRB- | denotes | ) |
T21163 | 48-56 | VBN | denotes | Targeted |
T21164 | 57-67 | NN | denotes | disruption |
T21165 | 68-70 | IN | denotes | of |
T21166 | 71-74 | DT | denotes | the |
T21167 | 81-86 | NN | denotes | locus |
T21168 | 75-80 | NN | denotes | Capn2 |
T21169 | 87-90 | VBD | denotes | was |
T21170 | 100-109 | RB | denotes | initially |
T21171 | 110-112 | IN | denotes | by |
T21172 | 113-121 | NNP | denotes | Southern |
T21173 | 122-130 | NN | denotes | blotting |
T21174 | 130-131 | . | denotes | . |
T21175 | 131-356 | sentence | denotes | Membranes were blotted with BamHI-digested genomic DNA extracted from ES cells and hybridized with a DIG-labeled 823 bp BamHI/HindIII fragment located immediately upstream of the short arm of the targeting vector (Figure 1). |
T21176 | 132-141 | NNS | denotes | Membranes |
T21177 | 147-154 | VBN | denotes | blotted |
T21178 | 142-146 | VBD | denotes | were |
T21179 | 155-159 | IN | denotes | with |
T21180 | 160-165 | NN | denotes | BamHI |
T21181 | 166-174 | VBN | denotes | digested |
T21182 | 165-166 | HYPH | denotes | - |
T21183 | 183-186 | NN | denotes | DNA |
T21184 | 175-182 | JJ | denotes | genomic |
T21185 | 187-196 | VBN | denotes | extracted |
T21186 | 197-201 | IN | denotes | from |
T21187 | 202-204 | NN | denotes | ES |
T21188 | 205-210 | NNS | denotes | cells |
T21189 | 211-214 | CC | denotes | and |
T21190 | 215-225 | VBD | denotes | hybridized |
T21191 | 226-230 | IN | denotes | with |
T21192 | 231-232 | DT | denotes | a |
T21193 | 266-274 | NN | denotes | fragment |
T21194 | 233-236 | NN | denotes | DIG |
T21195 | 237-244 | VBN | denotes | labeled |
T21196 | 236-237 | HYPH | denotes | - |
T21197 | 245-248 | CD | denotes | 823 |
T21198 | 249-251 | NN | denotes | bp |
T21199 | 252-257 | NN | denotes | BamHI |
T21200 | 258-265 | NN | denotes | HindIII |
T21201 | 257-258 | HYPH | denotes | / |
T21202 | 275-282 | VBN | denotes | located |
T21203 | 283-294 | RB | denotes | immediately |
T21204 | 295-303 | IN | denotes | upstream |
T21205 | 304-306 | IN | denotes | of |
T21206 | 307-310 | DT | denotes | the |
T21207 | 317-320 | NN | denotes | arm |
T21208 | 311-316 | JJ | denotes | short |
T21209 | 321-323 | IN | denotes | of |
T21210 | 324-327 | DT | denotes | the |
T21211 | 338-344 | NN | denotes | vector |
T21212 | 328-337 | NN | denotes | targeting |
T21213 | 345-346 | -LRB- | denotes | ( |
T21214 | 346-352 | NN | denotes | Figure |
T21215 | 353-354 | CD | denotes | 1 |
T21216 | 354-355 | -RRB- | denotes | ) |
T21217 | 355-356 | . | denotes | . |
T21218 | 356-560 | sentence | denotes | A 3.5-kb BamHI fragment corresponding to the wild-type allele was present in all cells, whereas a 5.3-kb fragment from the mutant allele was detected in two targeted cell lines, designated ES27 and ES36. |
T21219 | 357-358 | DT | denotes | A |
T21220 | 372-380 | NN | denotes | fragment |
T21221 | 359-362 | CD | denotes | 3.5 |
T21222 | 363-365 | NN | denotes | kb |
T21223 | 362-363 | HYPH | denotes | - |
T21224 | 366-371 | NN | denotes | BamHI |
T21225 | 419-422 | VBD | denotes | was |
T21226 | 381-394 | VBG | denotes | corresponding |
T21227 | 395-397 | IN | denotes | to |
T21228 | 398-401 | DT | denotes | the |
T21229 | 412-418 | NN | denotes | allele |
T21230 | 402-406 | JJ | denotes | wild |
T21231 | 407-411 | NN | denotes | type |
T21232 | 406-407 | HYPH | denotes | - |
T21233 | 423-430 | JJ | denotes | present |
T21234 | 431-433 | IN | denotes | in |
T21235 | 434-437 | DT | denotes | all |
T21236 | 438-443 | NNS | denotes | cells |
T21237 | 443-445 | , | denotes | , |
T21238 | 445-452 | IN | denotes | whereas |
T21239 | 498-506 | VBN | denotes | detected |
T21240 | 453-454 | DT | denotes | a |
T21241 | 462-470 | NN | denotes | fragment |
T21242 | 455-458 | CD | denotes | 5.3 |
T21243 | 459-461 | NN | denotes | kb |
T21244 | 458-459 | HYPH | denotes | - |
T21245 | 471-475 | IN | denotes | from |
T21246 | 476-479 | DT | denotes | the |
T21247 | 487-493 | NN | denotes | allele |
T21248 | 480-486 | NN | denotes | mutant |
T21249 | 494-497 | VBD | denotes | was |
T21250 | 507-509 | IN | denotes | in |
T21251 | 510-513 | CD | denotes | two |
T21252 | 528-533 | NNS | denotes | lines |
T21253 | 514-522 | VBN | denotes | targeted |
T21254 | 523-527 | NN | denotes | cell |
T21255 | 533-535 | , | denotes | , |
T21256 | 535-545 | VBN | denotes | designated |
T21257 | 546-550 | NN | denotes | ES27 |
T21258 | 551-554 | CC | denotes | and |
T21259 | 555-559 | NN | denotes | ES36 |
T21260 | 559-560 | . | denotes | . |
T21261 | 560-741 | sentence | denotes | (B) PCR genotyping was carried out with two separate reactions designed to amplify either a 2,748 bp segment from the wild-type allele or a 2,711 bp segment from the mutant allele. |
T21262 | 561-562 | -LRB- | denotes | ( |
T21263 | 562-563 | LS | denotes | B |
T21264 | 584-591 | VBN | denotes | carried |
T21265 | 563-564 | -RRB- | denotes | ) |
T21266 | 565-568 | NN | denotes | PCR |
T21267 | 569-579 | NN | denotes | genotyping |
T21268 | 580-583 | VBD | denotes | was |
T21269 | 592-595 | RP | denotes | out |
T21270 | 596-600 | IN | denotes | with |
T21271 | 601-604 | CD | denotes | two |
T21272 | 614-623 | NNS | denotes | reactions |
T21273 | 605-613 | JJ | denotes | separate |
T21274 | 624-632 | VBN | denotes | designed |
T21275 | 633-635 | TO | denotes | to |
T21276 | 636-643 | VB | denotes | amplify |
T21277 | 644-650 | CC | denotes | either |
T21278 | 662-669 | NN | denotes | segment |
T21279 | 651-652 | DT | denotes | a |
T21280 | 653-658 | CD | denotes | 2,748 |
T21281 | 659-661 | NN | denotes | bp |
T21282 | 670-674 | IN | denotes | from |
T21283 | 675-678 | DT | denotes | the |
T21284 | 689-695 | NN | denotes | allele |
T21285 | 679-683 | JJ | denotes | wild |
T21286 | 684-688 | NN | denotes | type |
T21287 | 683-684 | HYPH | denotes | - |
T21288 | 696-698 | CC | denotes | or |
T21289 | 699-700 | DT | denotes | a |
T21290 | 710-717 | NN | denotes | segment |
T21291 | 701-706 | CD | denotes | 2,711 |
T21292 | 707-709 | NN | denotes | bp |
T21293 | 718-722 | IN | denotes | from |
T21294 | 723-726 | DT | denotes | the |
T21295 | 734-740 | NN | denotes | allele |
T21296 | 727-733 | NN | denotes | mutant |
T21297 | 740-741 | . | denotes | . |
T21298 | 741-899 | sentence | denotes | Both reactions used a common sense primer located in intron 4, outside the short arm of the targeting vector, and distinct allele-specific antisense primers. |
T21299 | 742-746 | DT | denotes | Both |
T21300 | 747-756 | NNS | denotes | reactions |
T21301 | 757-761 | VBD | denotes | used |
T21302 | 762-763 | DT | denotes | a |
T21303 | 777-783 | NN | denotes | primer |
T21304 | 764-770 | JJ | denotes | common |
T21305 | 771-776 | NN | denotes | sense |
T21306 | 784-791 | VBN | denotes | located |
T21307 | 792-794 | IN | denotes | in |
T21308 | 795-801 | NN | denotes | intron |
T21309 | 802-803 | CD | denotes | 4 |
T21310 | 803-805 | , | denotes | , |
T21311 | 805-812 | IN | denotes | outside |
T21312 | 813-816 | DT | denotes | the |
T21313 | 823-826 | NN | denotes | arm |
T21314 | 817-822 | JJ | denotes | short |
T21315 | 827-829 | IN | denotes | of |
T21316 | 830-833 | DT | denotes | the |
T21317 | 844-850 | NN | denotes | vector |
T21318 | 834-843 | NN | denotes | targeting |
T21319 | 850-852 | , | denotes | , |
T21320 | 852-855 | CC | denotes | and |
T21321 | 856-864 | JJ | denotes | distinct |
T21322 | 891-898 | NNS | denotes | primers |
T21323 | 865-871 | NN | denotes | allele |
T21324 | 872-880 | JJ | denotes | specific |
T21325 | 871-872 | HYPH | denotes | - |
T21326 | 881-890 | NN | denotes | antisense |
T21327 | 898-899 | . | denotes | . |
T21328 | 899-1092 | sentence | denotes | The reaction to detect the wild-type allele used an antisense primer located in exon 7 while the amplification of the mutant sequence was done with an antisense primer in the PGK-Neo cassette. |
T21329 | 900-903 | DT | denotes | The |
T21330 | 904-912 | NN | denotes | reaction |
T21331 | 944-948 | VBD | denotes | used |
T21332 | 913-915 | TO | denotes | to |
T21333 | 916-922 | VB | denotes | detect |
T21334 | 923-926 | DT | denotes | the |
T21335 | 937-943 | NN | denotes | allele |
T21336 | 927-931 | JJ | denotes | wild |
T21337 | 932-936 | NN | denotes | type |
T21338 | 931-932 | HYPH | denotes | - |
T21339 | 949-951 | DT | denotes | an |
T21340 | 962-968 | NN | denotes | primer |
T21341 | 952-961 | NN | denotes | antisense |
T21342 | 969-976 | VBN | denotes | located |
T21343 | 977-979 | IN | denotes | in |
T21344 | 980-984 | NN | denotes | exon |
T21345 | 985-986 | CD | denotes | 7 |
T21346 | 987-992 | IN | denotes | while |
T21347 | 1038-1042 | VBN | denotes | done |
T21348 | 993-996 | DT | denotes | the |
T21349 | 997-1010 | NN | denotes | amplification |
T21350 | 1011-1013 | IN | denotes | of |
T21351 | 1014-1017 | DT | denotes | the |
T21352 | 1025-1033 | NN | denotes | sequence |
T21353 | 1018-1024 | NN | denotes | mutant |
T21354 | 1034-1037 | VBD | denotes | was |
T21355 | 1043-1047 | IN | denotes | with |
T21356 | 1048-1050 | DT | denotes | an |
T21357 | 1061-1067 | NN | denotes | primer |
T21358 | 1051-1060 | NN | denotes | antisense |
T21359 | 1068-1070 | IN | denotes | in |
T21360 | 1071-1074 | DT | denotes | the |
T21361 | 1083-1091 | NN | denotes | cassette |
T21362 | 1075-1078 | NN | denotes | PGK |
T21363 | 1079-1082 | NN | denotes | Neo |
T21364 | 1078-1079 | HYPH | denotes | - |
T21365 | 1091-1092 | . | denotes | . |
T21366 | 1092-1242 | sentence | denotes | The results confirm the presence of the wild-type allele in all cells, whereas the mutant allele signal was observed only in the two targeted clones. |
T21367 | 1093-1096 | DT | denotes | The |
T21368 | 1097-1104 | NNS | denotes | results |
T21369 | 1105-1112 | VBP | denotes | confirm |
T21370 | 1113-1116 | DT | denotes | the |
T21371 | 1117-1125 | NN | denotes | presence |
T21372 | 1126-1128 | IN | denotes | of |
T21373 | 1129-1132 | DT | denotes | the |
T21374 | 1143-1149 | NN | denotes | allele |
T21375 | 1133-1137 | JJ | denotes | wild |
T21376 | 1138-1142 | NN | denotes | type |
T21377 | 1137-1138 | HYPH | denotes | - |
T21378 | 1150-1152 | IN | denotes | in |
T21379 | 1153-1156 | DT | denotes | all |
T21380 | 1157-1162 | NNS | denotes | cells |
T21381 | 1162-1164 | , | denotes | , |
T21382 | 1164-1171 | IN | denotes | whereas |
T21383 | 1201-1209 | VBN | denotes | observed |
T21384 | 1172-1175 | DT | denotes | the |
T21385 | 1190-1196 | NN | denotes | signal |
T21386 | 1176-1182 | NN | denotes | mutant |
T21387 | 1183-1189 | NN | denotes | allele |
T21388 | 1197-1200 | VBD | denotes | was |
T21389 | 1210-1214 | RB | denotes | only |
T21390 | 1215-1217 | IN | denotes | in |
T21391 | 1218-1221 | DT | denotes | the |
T21392 | 1235-1241 | NNS | denotes | clones |
T21393 | 1222-1225 | CD | denotes | two |
T21394 | 1226-1234 | VBN | denotes | targeted |
T21395 | 1241-1242 | . | denotes | . |
T21396 | 1242-1283 | sentence | denotes | (M) denotes the molecular weight marker. |
T21397 | 1243-1244 | -LRB- | denotes | ( |
T21398 | 1247-1254 | VBZ | denotes | denotes |
T21399 | 1244-1245 | NN | denotes | M |
T21400 | 1245-1246 | -RRB- | denotes | ) |
T21401 | 1255-1258 | DT | denotes | the |
T21402 | 1276-1282 | NN | denotes | marker |
T21403 | 1259-1268 | JJ | denotes | molecular |
T21404 | 1269-1275 | NN | denotes | weight |
T21405 | 1282-1283 | . | denotes | . |
R6232 | T21152 | T21151 | prep | of,Characterization |
R6233 | T21153 | T21154 | amod | targeted,lines |
R6234 | T21154 | T21152 | pobj | lines,of |
R6235 | T21155 | T21156 | compound | ES,cell |
R6236 | T21156 | T21154 | compound | cell,lines |
R6237 | T21157 | T21151 | punct | .,Characterization |
R6238 | T21159 | T21160 | punct | (,A |
R6239 | T21160 | T21161 | meta | A,detected |
R6240 | T21162 | T21160 | punct | ),A |
R6241 | T21163 | T21164 | amod | Targeted,disruption |
R6242 | T21164 | T21161 | nsubjpass | disruption,detected |
R6243 | T21165 | T21164 | prep | of,disruption |
R6244 | T21166 | T21167 | det | the,locus |
R6245 | T21167 | T21165 | pobj | locus,of |
R6246 | T21168 | T21167 | compound | Capn2,locus |
R6247 | T21169 | T21161 | auxpass | was,detected |
R6248 | T21170 | T21161 | advmod | initially,detected |
R6249 | T21171 | T21161 | agent | by,detected |
R6250 | T21172 | T21173 | compound | Southern,blotting |
R6251 | T21173 | T21171 | pobj | blotting,by |
R6252 | T21174 | T21161 | punct | .,detected |
R6253 | T21176 | T21177 | nsubjpass | Membranes,blotted |
R6254 | T21178 | T21177 | auxpass | were,blotted |
R6255 | T21179 | T21177 | prep | with,blotted |
R6256 | T21180 | T21181 | npadvmod | BamHI,digested |
R6257 | T21181 | T21183 | amod | digested,DNA |
R6258 | T21182 | T21181 | punct | -,digested |
R6259 | T21183 | T21179 | pobj | DNA,with |
R6260 | T21184 | T21183 | amod | genomic,DNA |
R6261 | T21185 | T21183 | acl | extracted,DNA |
R6262 | T21186 | T21185 | prep | from,extracted |
R6263 | T21187 | T21188 | compound | ES,cells |
R6264 | T21188 | T21186 | pobj | cells,from |
R6265 | T21189 | T21177 | cc | and,blotted |
R6266 | T21190 | T21177 | conj | hybridized,blotted |
R6267 | T21191 | T21190 | prep | with,hybridized |
R6268 | T21192 | T21193 | det | a,fragment |
R6269 | T21193 | T21191 | pobj | fragment,with |
R6270 | T21194 | T21195 | npadvmod | DIG,labeled |
R6271 | T21195 | T21193 | amod | labeled,fragment |
R6272 | T21196 | T21195 | punct | -,labeled |
R6273 | T21197 | T21198 | nummod | 823,bp |
R6274 | T21198 | T21193 | compound | bp,fragment |
R6275 | T21199 | T21200 | compound | BamHI,HindIII |
R6276 | T21200 | T21193 | compound | HindIII,fragment |
R6277 | T21201 | T21200 | punct | /,HindIII |
R6278 | T21202 | T21193 | acl | located,fragment |
R6279 | T21203 | T21202 | advmod | immediately,located |
R6280 | T21204 | T21203 | advmod | upstream,immediately |
R6281 | T21205 | T21203 | prep | of,immediately |
R6282 | T21206 | T21207 | det | the,arm |
R6283 | T21207 | T21205 | pobj | arm,of |
R6284 | T21208 | T21207 | amod | short,arm |
R6285 | T21209 | T21207 | prep | of,arm |
R6286 | T21210 | T21211 | det | the,vector |
R6287 | T21211 | T21209 | pobj | vector,of |
R6288 | T21212 | T21211 | compound | targeting,vector |
R6289 | T21213 | T21214 | punct | (,Figure |
R6290 | T21214 | T21190 | parataxis | Figure,hybridized |
R6291 | T21215 | T21214 | nummod | 1,Figure |
R6292 | T21216 | T21214 | punct | ),Figure |
R6293 | T21217 | T21177 | punct | .,blotted |
R6294 | T21219 | T21220 | det | A,fragment |
R6295 | T21220 | T21225 | nsubj | fragment,was |
R6296 | T21221 | T21222 | nummod | 3.5,kb |
R6297 | T21222 | T21220 | compound | kb,fragment |
R6298 | T21223 | T21222 | punct | -,kb |
R6299 | T21224 | T21220 | compound | BamHI,fragment |
R6300 | T21226 | T21220 | acl | corresponding,fragment |
R6301 | T21227 | T21226 | prep | to,corresponding |
R6302 | T21228 | T21229 | det | the,allele |
R6303 | T21229 | T21227 | pobj | allele,to |
R6304 | T21230 | T21231 | amod | wild,type |
R6305 | T21231 | T21229 | compound | type,allele |
R6306 | T21232 | T21231 | punct | -,type |
R6307 | T21233 | T21225 | acomp | present,was |
R6308 | T21234 | T21225 | prep | in,was |
R6309 | T21235 | T21236 | det | all,cells |
R6310 | T21236 | T21234 | pobj | cells,in |
R6311 | T21237 | T21225 | punct | ", ",was |
R6312 | T21238 | T21239 | mark | whereas,detected |
R6313 | T21239 | T21225 | advcl | detected,was |
R6314 | T21240 | T21241 | det | a,fragment |
R6315 | T21241 | T21239 | nsubjpass | fragment,detected |
R6316 | T21242 | T21243 | nummod | 5.3,kb |
R6317 | T21243 | T21241 | compound | kb,fragment |
R6318 | T21244 | T21243 | punct | -,kb |
R6319 | T21245 | T21241 | prep | from,fragment |
R6320 | T21246 | T21247 | det | the,allele |
R6321 | T21247 | T21245 | pobj | allele,from |
R6322 | T21248 | T21247 | compound | mutant,allele |
R6323 | T21249 | T21239 | auxpass | was,detected |
R6324 | T21250 | T21239 | prep | in,detected |
R6325 | T21251 | T21252 | nummod | two,lines |
R6326 | T21252 | T21250 | pobj | lines,in |
R6327 | T21253 | T21252 | amod | targeted,lines |
R6328 | T21254 | T21252 | compound | cell,lines |
R6329 | T21255 | T21239 | punct | ", ",detected |
R6330 | T21256 | T21239 | dep | designated,detected |
R6331 | T21257 | T21256 | oprd | ES27,designated |
R6332 | T21258 | T21257 | cc | and,ES27 |
R6333 | T21259 | T21257 | conj | ES36,ES27 |
R6334 | T21260 | T21225 | punct | .,was |
R6335 | T21262 | T21263 | punct | (,B |
R6336 | T21263 | T21264 | meta | B,carried |
R6337 | T21265 | T21263 | punct | ),B |
R6338 | T21266 | T21267 | compound | PCR,genotyping |
R6339 | T21267 | T21264 | nsubjpass | genotyping,carried |
R6340 | T21268 | T21264 | auxpass | was,carried |
R6341 | T21269 | T21264 | prt | out,carried |
R6342 | T21270 | T21264 | prep | with,carried |
R6343 | T21271 | T21272 | nummod | two,reactions |
R6344 | T21272 | T21270 | pobj | reactions,with |
R6345 | T21273 | T21272 | amod | separate,reactions |
R6346 | T21274 | T21272 | acl | designed,reactions |
R6347 | T21275 | T21276 | aux | to,amplify |
R6348 | T21276 | T21274 | advcl | amplify,designed |
R6349 | T21277 | T21278 | preconj | either,segment |
R6350 | T21278 | T21276 | dobj | segment,amplify |
R6351 | T21279 | T21278 | det | a,segment |
R6352 | T21280 | T21281 | nummod | "2,748",bp |
R6353 | T21281 | T21278 | compound | bp,segment |
R6354 | T21282 | T21278 | prep | from,segment |
R6355 | T21283 | T21284 | det | the,allele |
R6356 | T21284 | T21282 | pobj | allele,from |
R6357 | T21285 | T21286 | amod | wild,type |
R6358 | T21286 | T21284 | compound | type,allele |
R6359 | T21287 | T21286 | punct | -,type |
R6360 | T21288 | T21278 | cc | or,segment |
R6361 | T21289 | T21290 | det | a,segment |
R6362 | T21290 | T21278 | conj | segment,segment |
R6363 | T21291 | T21292 | nummod | "2,711",bp |
R6364 | T21292 | T21290 | compound | bp,segment |
R6365 | T21293 | T21290 | prep | from,segment |
R6366 | T21294 | T21295 | det | the,allele |
R6367 | T21295 | T21293 | pobj | allele,from |
R6368 | T21296 | T21295 | compound | mutant,allele |
R6369 | T21297 | T21264 | punct | .,carried |
R6370 | T21299 | T21300 | det | Both,reactions |
R6371 | T21300 | T21301 | nsubj | reactions,used |
R6372 | T21302 | T21303 | det | a,primer |
R6373 | T21303 | T21301 | dobj | primer,used |
R6374 | T21304 | T21305 | amod | common,sense |
R6375 | T21305 | T21303 | compound | sense,primer |
R6376 | T21306 | T21303 | acl | located,primer |
R6377 | T21307 | T21306 | prep | in,located |
R6378 | T21308 | T21307 | pobj | intron,in |
R6379 | T21309 | T21308 | nummod | 4,intron |
R6380 | T21310 | T21306 | punct | ", ",located |
R6381 | T21311 | T21306 | prep | outside,located |
R6382 | T21312 | T21313 | det | the,arm |
R6383 | T21313 | T21311 | pobj | arm,outside |
R6384 | T21314 | T21313 | amod | short,arm |
R6385 | T21315 | T21313 | prep | of,arm |
R6386 | T21316 | T21317 | det | the,vector |
R6387 | T21317 | T21315 | pobj | vector,of |
R6388 | T21318 | T21317 | compound | targeting,vector |
R6389 | T21319 | T21313 | punct | ", ",arm |
R6390 | T21320 | T21313 | cc | and,arm |
R6391 | T21321 | T21322 | amod | distinct,primers |
R6392 | T21322 | T21313 | conj | primers,arm |
R6393 | T21323 | T21324 | npadvmod | allele,specific |
R6394 | T21324 | T21322 | amod | specific,primers |
R6395 | T21325 | T21324 | punct | -,specific |
R6396 | T21326 | T21322 | compound | antisense,primers |
R6397 | T21327 | T21301 | punct | .,used |
R6398 | T21329 | T21330 | det | The,reaction |
R6399 | T21330 | T21331 | nsubj | reaction,used |
R6400 | T21332 | T21333 | aux | to,detect |
R6401 | T21333 | T21330 | advcl | detect,reaction |
R6402 | T21334 | T21335 | det | the,allele |
R6403 | T21335 | T21333 | dobj | allele,detect |
R6404 | T21336 | T21337 | amod | wild,type |
R6405 | T21337 | T21335 | compound | type,allele |
R6406 | T21338 | T21337 | punct | -,type |
R6407 | T21339 | T21340 | det | an,primer |
R6408 | T21340 | T21331 | dobj | primer,used |
R6409 | T21341 | T21340 | compound | antisense,primer |
R6410 | T21342 | T21340 | acl | located,primer |
R6411 | T21343 | T21342 | prep | in,located |
R6412 | T21344 | T21343 | pobj | exon,in |
R6413 | T21345 | T21344 | nummod | 7,exon |
R6414 | T21346 | T21347 | mark | while,done |
R6415 | T21347 | T21331 | advcl | done,used |
R6416 | T21348 | T21349 | det | the,amplification |
R6417 | T21349 | T21347 | nsubjpass | amplification,done |
R6418 | T21350 | T21349 | prep | of,amplification |
R6419 | T21351 | T21352 | det | the,sequence |
R6420 | T21352 | T21350 | pobj | sequence,of |
R6421 | T21353 | T21352 | compound | mutant,sequence |
R6422 | T21354 | T21347 | auxpass | was,done |
R6423 | T21355 | T21347 | prep | with,done |
R6424 | T21356 | T21357 | det | an,primer |
R6425 | T21357 | T21355 | pobj | primer,with |
R6426 | T21358 | T21357 | compound | antisense,primer |
R6427 | T21359 | T21357 | prep | in,primer |
R6428 | T21360 | T21361 | det | the,cassette |
R6429 | T21361 | T21359 | pobj | cassette,in |
R6430 | T21362 | T21363 | compound | PGK,Neo |
R6431 | T21363 | T21361 | compound | Neo,cassette |
R6432 | T21364 | T21363 | punct | -,Neo |
R6433 | T21365 | T21331 | punct | .,used |
R6434 | T21367 | T21368 | det | The,results |
R6435 | T21368 | T21369 | nsubj | results,confirm |
R6436 | T21370 | T21371 | det | the,presence |
R6437 | T21371 | T21369 | dobj | presence,confirm |
R6438 | T21372 | T21371 | prep | of,presence |
R6439 | T21373 | T21374 | det | the,allele |
R6440 | T21374 | T21372 | pobj | allele,of |
R6441 | T21375 | T21376 | amod | wild,type |
R6442 | T21376 | T21374 | compound | type,allele |
R6443 | T21377 | T21376 | punct | -,type |
R6444 | T21378 | T21371 | prep | in,presence |
R6445 | T21379 | T21380 | det | all,cells |
R6446 | T21380 | T21378 | pobj | cells,in |
R6447 | T21381 | T21369 | punct | ", ",confirm |
R6448 | T21382 | T21383 | mark | whereas,observed |
R6449 | T21383 | T21369 | advcl | observed,confirm |
R6450 | T21384 | T21385 | det | the,signal |
R6451 | T21385 | T21383 | nsubjpass | signal,observed |
R6452 | T21386 | T21385 | compound | mutant,signal |
R6453 | T21387 | T21385 | compound | allele,signal |
R6454 | T21388 | T21383 | auxpass | was,observed |
R6455 | T21389 | T21390 | advmod | only,in |
R6456 | T21390 | T21383 | prep | in,observed |
R6457 | T21391 | T21392 | det | the,clones |
R6458 | T21392 | T21390 | pobj | clones,in |
R6459 | T21393 | T21392 | nummod | two,clones |
R6460 | T21394 | T21392 | amod | targeted,clones |
R6461 | T21395 | T21369 | punct | .,confirm |
R6462 | T21397 | T21398 | punct | (,denotes |
R6463 | T21399 | T21398 | nsubj | M,denotes |
R6464 | T21400 | T21398 | punct | ),denotes |
R6465 | T21401 | T21402 | det | the,marker |
R6466 | T21402 | T21398 | dobj | marker,denotes |
R6467 | T21403 | T21404 | amod | molecular,weight |
R6468 | T21404 | T21402 | compound | weight,marker |
R6469 | T21405 | T21398 | punct | .,denotes |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21060 | 29-36 | CL:0002322 | denotes | ES cell |
T21061 | 75-80 | PR:000005015 | denotes | Capn2 |
T21062 | 160-165 | PR:P23940 | denotes | BamHI |
T21063 | 175-182 | SO:0001026 | denotes | genomic |
T21064 | 202-210 | CL:0002322 | denotes | ES cells |
T21065 | 215-225 | GO:0097617 | denotes | hybridized |
T21066 | 233-236 | CHEBI:42098 | denotes | DIG |
T21067 | 249-251 | SO:0000028 | denotes | bp |
T21068 | 252-257 | PR:P23940 | denotes | BamHI |
T21069 | 258-265 | PR:P43870 | denotes | HindIII |
T21070 | 328-344 | SO:0001644 | denotes | targeting vector |
T21071 | 366-371 | PR:P23940 | denotes | BamHI |
T21072 | 412-418 | SO:0001023 | denotes | allele |
T21073 | 487-493 | SO:0001023 | denotes | allele |
T21074 | 659-661 | SO:0000028 | denotes | bp |
T21075 | 689-695 | SO:0001023 | denotes | allele |
T21076 | 707-709 | SO:0000028 | denotes | bp |
T21077 | 734-740 | SO:0001023 | denotes | allele |
T21078 | 777-783 | SO:0000112 | denotes | primer |
T21079 | 795-801 | SO:0000188 | denotes | intron |
T21080 | 834-850 | SO:0001644 | denotes | targeting vector |
T21081 | 865-871 | SO:0001023 | denotes | allele |
T21082 | 881-890 | SO:0000077 | denotes | antisense |
T21083 | 891-898 | SO:0000112 | denotes | primers |
T21084 | 937-943 | SO:0001023 | denotes | allele |
T21085 | 952-961 | SO:0000077 | denotes | antisense |
T21086 | 962-968 | SO:0000112 | denotes | primer |
T21087 | 980-984 | SO:0000147 | denotes | exon |
T21088 | 1051-1060 | SO:0000077 | denotes | antisense |
T21089 | 1061-1067 | SO:0000112 | denotes | primer |
T21090 | 1083-1091 | SO:0005853 | denotes | cassette |
T21091 | 1143-1149 | SO:0001023 | denotes | allele |
T21092 | 1183-1189 | SO:0001023 | denotes | allele |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21093 | 29-36 | CL:0002322 | denotes | ES cell |
T21094 | 32-36 | CL_GO_EXT:cell | denotes | cell |
T21095 | 75-80 | PR_EXT:000005015 | denotes | Capn2 |
T21096 | 160-165 | PR_EXT:P23940 | denotes | BamHI |
T21097 | 175-186 | SO_EXT:genomic_DNA | denotes | genomic DNA |
T21098 | 183-186 | CHEBI_SO_EXT:DNA | denotes | DNA |
T21099 | 202-210 | CL:0002322 | denotes | ES cells |
T21100 | 205-210 | CL_GO_EXT:cell | denotes | cells |
T21101 | 215-225 | GO:0097617 | denotes | hybridized |
T21102 | 233-236 | CHEBI:42098 | denotes | DIG |
T21103 | 237-244 | CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process | denotes | labeled |
T21104 | 249-251 | SO_EXT:0000028 | denotes | bp |
T21105 | 252-257 | PR_EXT:P23940 | denotes | BamHI |
T21106 | 258-265 | PR_EXT:P43870 | denotes | HindIII |
T21107 | 295-303 | SO_EXT:sequence_upstreamness | denotes | upstream |
T21108 | 328-344 | SO_EXT:0001644 | denotes | targeting vector |
T21109 | 364-365 | CHEBI_SO_EXT:base | denotes | b |
T21110 | 366-371 | PR_EXT:P23940 | denotes | BamHI |
T21111 | 402-411 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T21112 | 412-418 | SO_EXT:0001023 | denotes | allele |
T21113 | 438-443 | CL_GO_EXT:cell | denotes | cells |
T21114 | 460-461 | CHEBI_SO_EXT:base | denotes | b |
T21115 | 480-486 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T21116 | 487-493 | SO_EXT:0001023 | denotes | allele |
T21117 | 523-527 | CL_GO_EXT:cell | denotes | cell |
T21118 | 659-661 | SO_EXT:0000028 | denotes | bp |
T21119 | 679-688 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T21120 | 689-695 | SO_EXT:0001023 | denotes | allele |
T21121 | 707-709 | SO_EXT:0000028 | denotes | bp |
T21122 | 727-733 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T21123 | 734-740 | SO_EXT:0001023 | denotes | allele |
T21124 | 777-783 | SO_EXT:0000112 | denotes | primer |
T21125 | 795-801 | SO_EXT:0000188 | denotes | intron |
T21126 | 834-850 | SO_EXT:0001644 | denotes | targeting vector |
T21127 | 865-871 | SO_EXT:0001023 | denotes | allele |
T21128 | 881-890 | SO:0000077 | denotes | antisense |
T21129 | 891-898 | SO_EXT:0000112 | denotes | primers |
T21130 | 927-936 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T21131 | 937-943 | SO_EXT:0001023 | denotes | allele |
T21132 | 952-961 | SO:0000077 | denotes | antisense |
T21133 | 962-968 | SO_EXT:0000112 | denotes | primer |
T21134 | 980-984 | SO_EXT:0000147 | denotes | exon |
T21135 | 1018-1024 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T21136 | 1025-1033 | SO_EXT:biological_sequence | denotes | sequence |
T21137 | 1051-1060 | SO:0000077 | denotes | antisense |
T21138 | 1061-1067 | SO_EXT:0000112 | denotes | primer |
T21139 | 1075-1078 | GO_EXT:phosphoglycerate_kinase | denotes | PGK |
T21140 | 1079-1082 | CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase | denotes | Neo |
T21141 | 1083-1091 | SO_EXT:0005853 | denotes | cassette |
T21142 | 1133-1142 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T21143 | 1143-1149 | SO_EXT:0001023 | denotes | allele |
T21144 | 1157-1162 | CL_GO_EXT:cell | denotes | cells |
T21145 | 1176-1182 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T21146 | 1183-1189 | SO_EXT:0001023 | denotes | allele |
T21147 | 1235-1241 | SO_EXT:sequence_cloned_entity | denotes | clones |
T21148 | 1244-1245 | CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag | denotes | M |
T21149 | 1259-1268 | CHEBI_EXT:polyatomic_entity_or_group | denotes | molecular |
T21150 | 1276-1282 | CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag | denotes | marker |