PMC:1382200 / 31654-32752
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23649 | 1097-1098 | . | denotes | . |
T23648 | 1089-1097 | NNS | denotes | purposes |
T23647 | 1078-1088 | NN | denotes | genotyping |
T23646 | 1074-1077 | IN | denotes | for |
T23645 | 1069-1073 | VBN | denotes | used |
T23644 | 1064-1068 | RB | denotes | also |
T23643 | 1056-1063 | NNS | denotes | primers |
T23642 | 1052-1055 | NN | denotes | PCR |
T23641 | 1049-1051 | IN | denotes | of |
T23640 | 1039-1048 | NNS | denotes | positions |
T23639 | 1035-1038 | DT | denotes | the |
T23638 | 1020-1029 | NNS | denotes | triangles |
T23637 | 1030-1034 | VBP | denotes | mark |
T23636 | 1014-1019 | IN | denotes | while |
T23635 | 1012-1014 | , | denotes | , |
T23634 | 992-1002 | JJ | denotes | horizontal |
T23633 | 990-992 | , | denotes | , |
T23632 | 985-990 | JJ | denotes | solid |
T23631 | 1003-1012 | NN | denotes | rectangle |
T23630 | 983-984 | DT | denotes | a |
T23629 | 980-982 | IN | denotes | as |
T23628 | 971-973 | VBZ | denotes | is |
T23627 | 957-961 | NN | denotes | blot |
T23626 | 948-956 | NNP | denotes | Southern |
T23625 | 962-970 | NNS | denotes | analyses |
T23624 | 943-947 | JJS | denotes | most |
T23623 | 940-942 | IN | denotes | in |
T23622 | 935-939 | VBN | denotes | used |
T23621 | 974-979 | VBN | denotes | shown |
T23620 | 929-934 | NN | denotes | probe |
T23619 | 925-928 | DT | denotes | The |
T23618 | 924-1098 | sentence | denotes | The probe used in most Southern blot analyses is shown as a solid, horizontal rectangle, while triangles mark the positions of PCR primers also used for genotyping purposes. |
T23617 | 923-924 | . | denotes | . |
T23616 | 905-913 | JJ | denotes | vertical |
T23615 | 899-904 | JJ | denotes | solid |
T23614 | 914-923 | NN | denotes | rectangle |
T23613 | 897-898 | DT | denotes | a |
T23612 | 894-896 | IN | denotes | by |
T23611 | 879-881 | VBZ | denotes | is |
T23610 | 882-893 | VBN | denotes | represented |
T23609 | 873-878 | WDT | denotes | which |
T23608 | 871-872 | CD | denotes | 7 |
T23607 | 866-870 | NN | denotes | exon |
T23606 | 862-865 | IN | denotes | for |
T23605 | 855-861 | IN | denotes | except |
T23604 | 835-843 | JJ | denotes | vertical |
T23603 | 844-854 | NNS | denotes | rectangles |
T23602 | 830-834 | JJ | denotes | open |
T23601 | 827-829 | IN | denotes | as |
T23585 | 756-759 | CC | denotes | and |
T23584 | 743-744 | HYPH | denotes | - |
T23583 | 744-748 | NN | denotes | type |
T23582 | 739-743 | JJ | denotes | wild |
T23581 | 749-755 | NN | denotes | allele |
T23580 | 735-738 | DT | denotes | the |
T23579 | 730-734 | IN | denotes | from |
T23578 | 715-720 | NN | denotes | BamHI |
T23577 | 711-712 | HYPH | denotes | - |
T23576 | 712-714 | NN | denotes | kb |
T23575 | 708-711 | CD | denotes | 3.5 |
T23574 | 721-729 | NN | denotes | fragment |
T23573 | 706-707 | DT | denotes | a |
T23572 | 688-693 | JJ | denotes | short |
T23571 | 694-697 | NN | denotes | arm |
T23570 | 684-687 | DT | denotes | the |
T23569 | 681-683 | IN | denotes | of |
T23568 | 673-680 | JJ | denotes | outside |
T23567 | 661-672 | RB | denotes | immediately |
T23566 | 653-660 | VBN | denotes | located |
T23565 | 698-705 | VBZ | denotes | detects |
T23564 | 647-652 | NN | denotes | probe |
T23563 | 645-646 | DT | denotes | A |
T23562 | 644-807 | sentence | denotes | A probe located immediately outside of the short arm detects a 3.5-kb BamHI fragment from the wild-type allele and a 5.3-kb BamHI fragment from the mutant allele. |
T23561 | 643-644 | . | denotes | . |
T23560 | 638-639 | -RRB- | denotes | ) |
T23559 | 634-638 | JJ | denotes | long |
T23558 | 633-634 | -LRB- | denotes | ( |
T23557 | 622-632 | JJ | denotes | downstream |
T23556 | 640-643 | NN | denotes | arm |
T23555 | 618-621 | DT | denotes | the |
T23554 | 615-617 | IN | denotes | in |
T23553 | 606-614 | NN | denotes | homology |
T23552 | 603-605 | IN | denotes | of |
T23551 | 599-600 | HYPH | denotes | - |
T23550 | 600-602 | NN | denotes | kb |
T23549 | 596-599 | CD | denotes | 7.9 |
T23548 | 592-595 | CC | denotes | and |
T23547 | 586-587 | -RRB- | denotes | ) |
T23546 | 581-586 | JJ | denotes | short |
T23545 | 580-581 | -LRB- | denotes | ( |
T23544 | 571-579 | JJ | denotes | upstream |
T23543 | 588-591 | NN | denotes | arm |
T23542 | 567-570 | DT | denotes | the |
T23541 | 564-566 | IN | denotes | in |
T23540 | 544-554 | JJ | denotes | homologous |
T23539 | 555-563 | NN | denotes | sequence |
T23538 | 538-543 | NN | denotes | Capn2 |
T23537 | 535-537 | IN | denotes | of |
T23536 | 531-532 | HYPH | denotes | - |
T23535 | 532-534 | NN | denotes | kb |
T23534 | 528-531 | CD | denotes | 2.7 |
T23533 | 525-527 | IN | denotes | by |
T23532 | 514-516 | VBZ | denotes | is |
T23531 | 500-501 | HYPH | denotes | - |
T23530 | 501-504 | NN | denotes | Neo |
T23529 | 497-500 | NN | denotes | PGK |
T23528 | 505-513 | NN | denotes | cassette |
T23527 | 493-496 | DT | denotes | the |
T23526 | 491-493 | , | denotes | , |
T23525 | 475-484 | NN | denotes | targeting |
T23524 | 485-491 | NN | denotes | vector |
T23523 | 471-474 | DT | denotes | the |
T23522 | 468-470 | IN | denotes | In |
T23521 | 466-467 | -RRB- | denotes | ) |
T23520 | 460-466 | NN | denotes | Asn286 |
T23519 | 459-460 | -LRB- | denotes | ( |
T23518 | 440-450 | NN | denotes | asparagine |
T23517 | 435-439 | NN | denotes | site |
T23516 | 428-434 | JJ | denotes | active |
T23515 | 451-458 | NN | denotes | residue |
T23514 | 424-427 | DT | denotes | the |
T23513 | 416-423 | VBZ | denotes | encodes |
T23512 | 410-415 | WDT | denotes | which |
T23511 | 408-409 | -RRB- | denotes | ) |
T23510 | 394-398 | JJ | denotes | grey |
T23509 | 399-408 | NN | denotes | rectangle |
T23508 | 393-394 | -LRB- | denotes | ( |
T23507 | 391-392 | CD | denotes | 7 |
T23506 | 386-390 | NN | denotes | exon |
T23505 | 375-385 | VBG | denotes | containing |
T23504 | 358-365 | JJ | denotes | genomic |
T23503 | 354-355 | HYPH | denotes | - |
T23502 | 355-357 | NN | denotes | kb |
T23501 | 351-354 | CD | denotes | 0.8 |
T23500 | 366-374 | NN | denotes | fragment |
T23499 | 349-350 | DT | denotes | a |
T23498 | 517-524 | VBN | denotes | flanked |
T23497 | 326-327 | HYPH | denotes | - |
T23496 | 327-330 | NN | denotes | Neo |
T23495 | 323-326 | NN | denotes | PGK |
T23494 | 331-339 | NN | denotes | cassette |
T23493 | 321-322 | DT | denotes | a |
T23492 | 319-321 | , | denotes | , |
T23491 | 306-312 | NN | denotes | mutant |
T23490 | 313-319 | NN | denotes | allele |
T23489 | 302-305 | DT | denotes | the |
T23488 | 340-348 | VBZ | denotes | replaces |
T23487 | 299-301 | IN | denotes | In |
T23486 | 298-644 | sentence | denotes | In the mutant allele, a PGK-Neo cassette replaces a 0.8-kb genomic fragment containing exon 7 (grey rectangle) which encodes the active site asparagine residue (Asn286) In the targeting vector, the PGK-Neo cassette is flanked by 2.7-kb of Capn2 homologous sequence in the upstream (short) arm and 7.9-kb of homology in the downstream (long) arm. |
T23485 | 297-298 | . | denotes | . |
T23484 | 285-288 | VBP | denotes | are |
T23483 | 283-284 | -RRB- | denotes | ) |
T23482 | 277-283 | JJ | denotes | bottom |
T23481 | 276-277 | -LRB- | denotes | ( |
T23480 | 262-268 | NN | denotes | mutant |
T23479 | 269-275 | NN | denotes | allele |
T23478 | 258-261 | DT | denotes | the |
T23477 | 254-257 | CC | denotes | and |
T23476 | 252-254 | , | denotes | , |
T23475 | 251-252 | -RRB- | denotes | ) |
T23474 | 245-251 | JJ | denotes | middle |
T23473 | 244-245 | -LRB- | denotes | ( |
T23472 | 227-236 | NN | denotes | targeting |
T23471 | 237-243 | NN | denotes | vector |
T23470 | 223-226 | DT | denotes | the |
T23469 | 221-223 | , | denotes | , |
T23468 | 220-221 | -RRB- | denotes | ) |
T23467 | 217-220 | JJ | denotes | top |
T23466 | 216-217 | -LRB- | denotes | ( |
T23465 | 203-204 | HYPH | denotes | - |
T23464 | 204-208 | NN | denotes | type |
T23463 | 199-203 | JJ | denotes | wild |
T23462 | 209-215 | NN | denotes | allele |
T23461 | 195-198 | DT | denotes | the |
T23460 | 192-194 | IN | denotes | of |
T23459 | 289-297 | VBN | denotes | depicted |
T23458 | 181-191 | NNS | denotes | structures |
T23457 | 177-180 | DT | denotes | The |
T23456 | 176-298 | sentence | denotes | The structures of the wild-type allele (top), the targeting vector (middle), and the mutant allele (bottom) are depicted. |
T23455 | 175-176 | . | denotes | . |
T23454 | 162-175 | NN | denotes | recombination |
T23453 | 151-161 | JJ | denotes | homologous |
T23452 | 148-150 | IN | denotes | by |
T23451 | 142-147 | NNS | denotes | cells |
T23450 | 139-141 | NN | denotes | ES |
T23449 | 136-138 | IN | denotes | in |
T23448 | 122-125 | VBD | denotes | was |
T23447 | 120-122 | , | denotes | , |
T23446 | 108-110 | CD | denotes | 80 |
T23445 | 107-108 | HYPH | denotes | - |
T23444 | 111-112 | NN | denotes | k |
T23443 | 106-107 | NN | denotes | m |
T23442 | 113-120 | NN | denotes | subunit |
T23441 | 102-105 | DT | denotes | the |
T23440 | 93-101 | VBG | denotes | encoding |
T23439 | 91-93 | , | denotes | , |
T23438 | 126-135 | VBN | denotes | disrupted |
T23437 | 81-86 | NN | denotes | Capn2 |
T23436 | 74-80 | JJ | denotes | murine |
T23435 | 87-91 | NN | denotes | gene |
T23434 | 70-73 | DT | denotes | The |
T23433 | 69-176 | sentence | denotes | The murine Capn2 gene, encoding the m-80 k subunit, was disrupted in ES cells by homologous recombination. |
T23432 | 68-69 | . | denotes | . |
T23431 | 58-63 | NN | denotes | Capn2 |
T23430 | 51-57 | JJ | denotes | murine |
T23429 | 64-68 | NN | denotes | gene |
T23428 | 47-50 | DT | denotes | the |
T23427 | 44-46 | IN | denotes | of |
T23426 | 33-43 | NN | denotes | disruption |
T23425 | 29-32 | IN | denotes | for |
T23424 | 20-28 | NN | denotes | strategy |
T23423 | 10-19 | NN | denotes | Targeting |
T23600 | 814-817 | VBP | denotes | are |
T23599 | 818-826 | VBN | denotes | depicted |
T23598 | 808-813 | NNS | denotes | Exons |
T23597 | 807-924 | sentence | denotes | Exons are depicted as open vertical rectangles except for exon 7 which is represented by a solid vertical rectangle. |
T23596 | 806-807 | . | denotes | . |
T23595 | 793-799 | NN | denotes | mutant |
T23594 | 800-806 | NN | denotes | allele |
T23593 | 789-792 | DT | denotes | the |
T23592 | 784-788 | IN | denotes | from |
T23591 | 769-774 | NN | denotes | BamHI |
T23590 | 765-766 | HYPH | denotes | - |
T23589 | 766-768 | NN | denotes | kb |
T23588 | 762-765 | CD | denotes | 5.3 |
T23587 | 775-783 | NN | denotes | fragment |
T23586 | 760-761 | DT | denotes | a |
R6939 | T23423 | T23424 | compound | Targeting,strategy |
R6940 | T23425 | T23424 | prep | for,strategy |
R6941 | T23426 | T23425 | pobj | disruption,for |
R6942 | T23427 | T23426 | prep | of,disruption |
R6943 | T23428 | T23429 | det | the,gene |
R6944 | T23429 | T23427 | pobj | gene,of |
R6945 | T23430 | T23429 | amod | murine,gene |
R6946 | T23431 | T23429 | compound | Capn2,gene |
R6947 | T23432 | T23424 | punct | .,strategy |
R6948 | T23434 | T23435 | det | The,gene |
R6949 | T23435 | T23438 | nsubjpass | gene,disrupted |
R6950 | T23436 | T23435 | amod | murine,gene |
R6951 | T23437 | T23435 | compound | Capn2,gene |
R6952 | T23439 | T23435 | punct | ", ",gene |
R6953 | T23440 | T23435 | acl | encoding,gene |
R6954 | T23441 | T23442 | det | the,subunit |
R6955 | T23442 | T23440 | dobj | subunit,encoding |
R6956 | T23443 | T23444 | nmod | m,k |
R6957 | T23444 | T23442 | compound | k,subunit |
R6958 | T23445 | T23444 | punct | -,k |
R6959 | T23446 | T23444 | nummod | 80,k |
R6960 | T23447 | T23438 | punct | ", ",disrupted |
R6961 | T23448 | T23438 | auxpass | was,disrupted |
R6962 | T23449 | T23438 | prep | in,disrupted |
R6963 | T23450 | T23451 | compound | ES,cells |
R6964 | T23451 | T23449 | pobj | cells,in |
R6965 | T23452 | T23438 | agent | by,disrupted |
R6966 | T23453 | T23454 | amod | homologous,recombination |
R6967 | T23454 | T23452 | pobj | recombination,by |
R6968 | T23455 | T23438 | punct | .,disrupted |
R6969 | T23457 | T23458 | det | The,structures |
R6970 | T23458 | T23459 | nsubjpass | structures,depicted |
R6971 | T23460 | T23458 | prep | of,structures |
R6972 | T23461 | T23462 | det | the,allele |
R6973 | T23462 | T23460 | pobj | allele,of |
R6974 | T23463 | T23464 | amod | wild,type |
R6975 | T23464 | T23462 | compound | type,allele |
R6976 | T23465 | T23464 | punct | -,type |
R6977 | T23466 | T23467 | punct | (,top |
R6978 | T23467 | T23462 | parataxis | top,allele |
R6979 | T23468 | T23467 | punct | ),top |
R6980 | T23469 | T23462 | punct | ", ",allele |
R6981 | T23470 | T23471 | det | the,vector |
R6982 | T23471 | T23462 | conj | vector,allele |
R6983 | T23472 | T23471 | compound | targeting,vector |
R6984 | T23473 | T23474 | punct | (,middle |
R6985 | T23474 | T23471 | parataxis | middle,vector |
R6986 | T23475 | T23474 | punct | ),middle |
R6987 | T23476 | T23471 | punct | ", ",vector |
R6988 | T23477 | T23471 | cc | and,vector |
R6989 | T23478 | T23479 | det | the,allele |
R6990 | T23479 | T23471 | conj | allele,vector |
R6991 | T23480 | T23479 | compound | mutant,allele |
R6992 | T23481 | T23482 | punct | (,bottom |
R6993 | T23482 | T23479 | parataxis | bottom,allele |
R6994 | T23483 | T23482 | punct | ),bottom |
R6995 | T23484 | T23459 | auxpass | are,depicted |
R6996 | T23485 | T23459 | punct | .,depicted |
R6997 | T23487 | T23488 | prep | In,replaces |
R6998 | T23488 | T23498 | ccomp | replaces,flanked |
R6999 | T23489 | T23490 | det | the,allele |
R7000 | T23490 | T23487 | pobj | allele,In |
R7001 | T23491 | T23490 | compound | mutant,allele |
R7002 | T23492 | T23488 | punct | ", ",replaces |
R7003 | T23493 | T23494 | det | a,cassette |
R7004 | T23494 | T23488 | nsubj | cassette,replaces |
R7005 | T23495 | T23496 | compound | PGK,Neo |
R7006 | T23496 | T23494 | compound | Neo,cassette |
R7007 | T23497 | T23496 | punct | -,Neo |
R7008 | T23499 | T23500 | det | a,fragment |
R7009 | T23500 | T23488 | dobj | fragment,replaces |
R7010 | T23501 | T23502 | nummod | 0.8,kb |
R7011 | T23502 | T23500 | nmod | kb,fragment |
R7012 | T23503 | T23502 | punct | -,kb |
R7013 | T23504 | T23500 | amod | genomic,fragment |
R7014 | T23505 | T23500 | acl | containing,fragment |
R7015 | T23506 | T23505 | dobj | exon,containing |
R7016 | T23507 | T23506 | nummod | 7,exon |
R7017 | T23508 | T23509 | punct | (,rectangle |
R7018 | T23509 | T23506 | parataxis | rectangle,exon |
R7019 | T23510 | T23509 | amod | grey,rectangle |
R7020 | T23511 | T23509 | punct | ),rectangle |
R7021 | T23512 | T23513 | dep | which,encodes |
R7022 | T23513 | T23500 | relcl | encodes,fragment |
R7023 | T23514 | T23515 | det | the,residue |
R7024 | T23515 | T23513 | dobj | residue,encodes |
R7025 | T23516 | T23515 | amod | active,residue |
R7026 | T23517 | T23515 | compound | site,residue |
R7027 | T23518 | T23515 | compound | asparagine,residue |
R7028 | T23519 | T23515 | punct | (,residue |
R7029 | T23520 | T23515 | appos | Asn286,residue |
R7030 | T23521 | T23498 | punct | ),flanked |
R7031 | T23522 | T23498 | prep | In,flanked |
R7032 | T23523 | T23524 | det | the,vector |
R7033 | T23524 | T23522 | pobj | vector,In |
R7034 | T23525 | T23524 | compound | targeting,vector |
R7035 | T23526 | T23498 | punct | ", ",flanked |
R7036 | T23527 | T23528 | det | the,cassette |
R7037 | T23528 | T23498 | nsubjpass | cassette,flanked |
R7038 | T23529 | T23530 | compound | PGK,Neo |
R7039 | T23530 | T23528 | compound | Neo,cassette |
R7040 | T23531 | T23530 | punct | -,Neo |
R7041 | T23532 | T23498 | auxpass | is,flanked |
R7042 | T23533 | T23498 | agent | by,flanked |
R7043 | T23534 | T23535 | nummod | 2.7,kb |
R7044 | T23535 | T23533 | pobj | kb,by |
R7045 | T23536 | T23535 | punct | -,kb |
R7046 | T23537 | T23535 | prep | of,kb |
R7047 | T23538 | T23539 | nmod | Capn2,sequence |
R7048 | T23539 | T23537 | pobj | sequence,of |
R7049 | T23540 | T23539 | amod | homologous,sequence |
R7050 | T23541 | T23498 | prep | in,flanked |
R7051 | T23542 | T23543 | det | the,arm |
R7052 | T23543 | T23541 | pobj | arm,in |
R7053 | T23544 | T23543 | amod | upstream,arm |
R7054 | T23545 | T23543 | punct | (,arm |
R7055 | T23546 | T23543 | amod | short,arm |
R7056 | T23547 | T23543 | punct | ),arm |
R7057 | T23548 | T23498 | cc | and,flanked |
R7058 | T23549 | T23550 | nummod | 7.9,kb |
R7059 | T23550 | T23498 | conj | kb,flanked |
R7060 | T23551 | T23550 | punct | -,kb |
R7061 | T23552 | T23550 | prep | of,kb |
R7062 | T23553 | T23552 | pobj | homology,of |
R7063 | T23554 | T23550 | prep | in,kb |
R7064 | T23555 | T23556 | det | the,arm |
R7065 | T23556 | T23554 | pobj | arm,in |
R7066 | T23557 | T23556 | amod | downstream,arm |
R7067 | T23558 | T23556 | punct | (,arm |
R7068 | T23559 | T23556 | amod | long,arm |
R7069 | T23560 | T23556 | punct | ),arm |
R7070 | T23561 | T23498 | punct | .,flanked |
R7071 | T23563 | T23564 | det | A,probe |
R7072 | T23564 | T23565 | nsubj | probe,detects |
R7073 | T23566 | T23564 | acl | located,probe |
R7074 | T23567 | T23568 | advmod | immediately,outside |
R7075 | T23568 | T23566 | advmod | outside,located |
R7076 | T23569 | T23568 | prep | of,outside |
R7077 | T23570 | T23571 | det | the,arm |
R7078 | T23571 | T23569 | pobj | arm,of |
R7079 | T23572 | T23571 | amod | short,arm |
R7080 | T23573 | T23574 | det | a,fragment |
R7081 | T23574 | T23565 | dobj | fragment,detects |
R7082 | T23575 | T23576 | nummod | 3.5,kb |
R7083 | T23576 | T23574 | compound | kb,fragment |
R7084 | T23577 | T23576 | punct | -,kb |
R7085 | T23578 | T23574 | compound | BamHI,fragment |
R7086 | T23579 | T23565 | prep | from,detects |
R7087 | T23580 | T23581 | det | the,allele |
R7088 | T23581 | T23579 | pobj | allele,from |
R7089 | T23582 | T23583 | amod | wild,type |
R7090 | T23583 | T23581 | compound | type,allele |
R7091 | T23584 | T23583 | punct | -,type |
R7092 | T23585 | T23565 | cc | and,detects |
R7093 | T23586 | T23587 | det | a,fragment |
R7094 | T23587 | T23565 | conj | fragment,detects |
R7095 | T23588 | T23589 | nummod | 5.3,kb |
R7096 | T23589 | T23587 | compound | kb,fragment |
R7097 | T23590 | T23589 | punct | -,kb |
R7098 | T23591 | T23587 | compound | BamHI,fragment |
R7099 | T23592 | T23587 | prep | from,fragment |
R7100 | T23593 | T23594 | det | the,allele |
R7101 | T23594 | T23592 | pobj | allele,from |
R7102 | T23595 | T23594 | compound | mutant,allele |
R7103 | T23596 | T23565 | punct | .,detects |
R7104 | T23598 | T23599 | nsubjpass | Exons,depicted |
R7105 | T23600 | T23599 | auxpass | are,depicted |
R7106 | T23601 | T23599 | prep | as,depicted |
R7107 | T23602 | T23603 | amod | open,rectangles |
R7108 | T23603 | T23601 | pobj | rectangles,as |
R7109 | T23604 | T23603 | amod | vertical,rectangles |
R7110 | T23605 | T23599 | prep | except,depicted |
R7111 | T23606 | T23605 | prep | for,except |
R7112 | T23607 | T23606 | pobj | exon,for |
R7113 | T23608 | T23607 | nummod | 7,exon |
R7114 | T23609 | T23610 | dep | which,represented |
R7115 | T23610 | T23607 | relcl | represented,exon |
R7116 | T23611 | T23610 | auxpass | is,represented |
R7117 | T23612 | T23610 | agent | by,represented |
R7118 | T23613 | T23614 | det | a,rectangle |
R7119 | T23614 | T23612 | pobj | rectangle,by |
R7120 | T23615 | T23614 | amod | solid,rectangle |
R7121 | T23616 | T23614 | amod | vertical,rectangle |
R7122 | T23617 | T23599 | punct | .,depicted |
R7123 | T23619 | T23620 | det | The,probe |
R7124 | T23620 | T23621 | nsubjpass | probe,shown |
R7125 | T23622 | T23620 | acl | used,probe |
R7126 | T23623 | T23622 | prep | in,used |
R7127 | T23624 | T23625 | amod | most,analyses |
R7128 | T23625 | T23623 | pobj | analyses,in |
R7129 | T23626 | T23627 | compound | Southern,blot |
R7130 | T23627 | T23625 | compound | blot,analyses |
R7131 | T23628 | T23621 | auxpass | is,shown |
R7132 | T23629 | T23621 | prep | as,shown |
R7133 | T23630 | T23631 | det | a,rectangle |
R7134 | T23631 | T23629 | pobj | rectangle,as |
R7135 | T23632 | T23631 | amod | solid,rectangle |
R7136 | T23633 | T23631 | punct | ", ",rectangle |
R7137 | T23634 | T23631 | amod | horizontal,rectangle |
R7138 | T23635 | T23621 | punct | ", ",shown |
R7139 | T23636 | T23637 | mark | while,mark |
R7140 | T23637 | T23621 | advcl | mark,shown |
R7141 | T23638 | T23637 | nsubj | triangles,mark |
R7142 | T23639 | T23640 | det | the,positions |
R7143 | T23640 | T23637 | dobj | positions,mark |
R7144 | T23641 | T23640 | prep | of,positions |
R7145 | T23642 | T23643 | compound | PCR,primers |
R7146 | T23643 | T23641 | pobj | primers,of |
R7147 | T23644 | T23645 | advmod | also,used |
R7148 | T23645 | T23643 | acl | used,primers |
R7149 | T23646 | T23645 | prep | for,used |
R7150 | T23647 | T23648 | compound | genotyping,purposes |
R7151 | T23648 | T23646 | pobj | purposes,for |
R7152 | T23649 | T23621 | punct | .,shown |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23369 | 1056-1063 | SO:0000112 | denotes | primers |
T23368 | 866-870 | SO:0000147 | denotes | exon |
T23367 | 808-813 | SO:0000147 | denotes | Exons |
T23366 | 800-806 | SO:0001023 | denotes | allele |
T23365 | 769-774 | PR:P23940 | denotes | BamHI |
T23364 | 749-755 | SO:0001023 | denotes | allele |
T23363 | 715-720 | PR:P23940 | denotes | BamHI |
T23362 | 538-543 | PR:000005015 | denotes | Capn2 |
T23361 | 517-524 | SO:0000357 | denotes | flanked |
T23360 | 505-513 | SO:0005853 | denotes | cassette |
T23359 | 475-491 | SO:0001644 | denotes | targeting vector |
T23358 | 428-439 | SO:0100019 | denotes | active site |
T23357 | 386-390 | SO:0000147 | denotes | exon |
T23356 | 358-365 | SO:0001026 | denotes | genomic |
T23355 | 331-339 | SO:0005853 | denotes | cassette |
T23354 | 313-319 | SO:0001023 | denotes | allele |
T23353 | 269-275 | SO:0001023 | denotes | allele |
T23352 | 227-243 | SO:0001644 | denotes | targeting vector |
T23351 | 209-215 | SO:0001023 | denotes | allele |
T23350 | 139-147 | CL:0002322 | denotes | ES cells |
T23349 | 106-120 | PR:000005015 | denotes | m-80 k subunit |
T23348 | 87-91 | SO:0000704 | denotes | gene |
T23347 | 81-86 | PR:000005015 | denotes | Capn2 |
T23346 | 74-80 | NCBITaxon:39107 | denotes | murine |
T23345 | 64-68 | SO:0000704 | denotes | gene |
T23344 | 58-63 | PR:000005015 | denotes | Capn2 |
T23343 | 51-57 | NCBITaxon:39107 | denotes | murine |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23395 | 416-423 | SO_EXT:sequence_coding_function | denotes | encodes |
T23394 | 386-390 | SO_EXT:0000147 | denotes | exon |
T23393 | 358-365 | SO_EXT:0001026 | denotes | genomic |
T23392 | 356-357 | CHEBI_SO_EXT:base | denotes | b |
T23391 | 340-348 | SO_EXT:sequence_substitution_process | denotes | replaces |
T23390 | 331-339 | SO_EXT:0005853 | denotes | cassette |
T23389 | 327-330 | CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase | denotes | Neo |
T23388 | 323-326 | GO_EXT:phosphoglycerate_kinase | denotes | PGK |
T23387 | 313-319 | SO_EXT:0001023 | denotes | allele |
T23386 | 306-312 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T23385 | 269-275 | SO_EXT:0001023 | denotes | allele |
T23384 | 262-268 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T23383 | 227-243 | SO_EXT:0001644 | denotes | targeting vector |
T23382 | 209-215 | SO_EXT:0001023 | denotes | allele |
T23381 | 199-208 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T23380 | 162-175 | GO_SO_EXT:sequence_rearrangement_process | denotes | recombination |
T23379 | 142-147 | CL_GO_EXT:cell | denotes | cells |
T23378 | 139-147 | CL:0002322 | denotes | ES cells |
T23377 | 106-120 | PR_EXT:000005015 | denotes | m-80 k subunit |
T23376 | 93-101 | SO_EXT:sequence_coding_function | denotes | encoding |
T23375 | 87-91 | SO_EXT:0000704 | denotes | gene |
T23374 | 81-86 | PR_EXT:000005015 | denotes | Capn2 |
T23373 | 74-80 | NCBITaxon:39107 | denotes | murine |
T23372 | 64-68 | SO_EXT:0000704 | denotes | gene |
T23371 | 58-63 | PR_EXT:000005015 | denotes | Capn2 |
T23370 | 51-57 | NCBITaxon:39107 | denotes | murine |
T23422 | 1056-1063 | SO_EXT:0000112 | denotes | primers |
T23421 | 929-934 | CHEBI_SO_EXT:molecular_probe | denotes | probe |
T23420 | 866-870 | SO_EXT:0000147 | denotes | exon |
T23419 | 808-813 | SO_EXT:0000147 | denotes | Exons |
T23418 | 800-806 | SO_EXT:0001023 | denotes | allele |
T23417 | 793-799 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
T23416 | 769-774 | PR_EXT:P23940 | denotes | BamHI |
T23415 | 767-768 | CHEBI_SO_EXT:base | denotes | b |
T23414 | 749-755 | SO_EXT:0001023 | denotes | allele |
T23413 | 739-748 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T23412 | 715-720 | PR_EXT:P23940 | denotes | BamHI |
T23411 | 713-714 | CHEBI_SO_EXT:base | denotes | b |
T23410 | 647-652 | CHEBI_SO_EXT:molecular_probe | denotes | probe |
T23409 | 622-632 | SO_EXT:sequence_downstreamness | denotes | downstream |
T23408 | 601-602 | CHEBI_SO_EXT:base | denotes | b |
T23407 | 571-579 | SO_EXT:sequence_upstreamness | denotes | upstream |
T23406 | 555-563 | SO_EXT:biological_sequence | denotes | sequence |
T23405 | 538-543 | PR_EXT:000005015 | denotes | Capn2 |
T23404 | 533-534 | CHEBI_SO_EXT:base | denotes | b |
T23403 | 517-524 | SO:0000357 | denotes | flanked |
T23402 | 505-513 | SO_EXT:0005853 | denotes | cassette |
T23401 | 501-504 | CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase | denotes | Neo |
T23400 | 497-500 | GO_EXT:phosphoglycerate_kinase | denotes | PGK |
T23399 | 475-491 | SO_EXT:0001644 | denotes | targeting vector |
T23398 | 451-458 | CHEBI_EXT:residue | denotes | residue |
T23397 | 440-450 | CHEBI_SO_EXT:asparagine | denotes | asparagine |
T23396 | 428-439 | SO_EXT:0100019 | denotes | active site |