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PMC:1382200 / 30952-31158 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T16820 205-206 . denotes .
T16819 204-205 -RRB- denotes ]
T16818 202-204 CD denotes 48
T16817 201-202 -LRB- denotes [
T16816 187-188 HYPH denotes -
T16815 188-191 NN denotes Neo
T16814 184-187 NN denotes PGK
T16813 192-200 NN denotes cassette
T16812 180-183 DT denotes the
T16811 177-179 IN denotes of
T16810 168-176 RB denotes upstream
T16809 156-160 NN denotes pPNT
T16808 161-167 NN denotes vector
T16807 152-155 DT denotes the
T16806 147-151 IN denotes into
T16805 134-137 VBD denotes was
T16804 138-146 VBN denotes inserted
T16803 128-133 WDT denotes which
T16802 126-128 , denotes ,
T16801 125-126 CD denotes 6
T16800 121-124 CC denotes and
T16799 119-120 CD denotes 5
T16798 113-118 NNS denotes exons
T16797 102-112 VBG denotes containing
T16796 100-102 , denotes ,
T16795 85-86 HYPH denotes -
T16794 86-91 NN denotes BamHI
T16793 78-85 NN denotes HindIII
T16792 74-75 HYPH denotes -
T16791 75-77 NN denotes kb
T16790 71-74 CD denotes 2.7
T16789 92-100 NN denotes fragment
T16788 69-70 DT denotes a
T16787 66-68 IN denotes by
T16786 53-56 VBD denotes was
T16785 33-42 NN denotes targeting
T16784 43-52 NN denotes construct
T16783 29-32 DT denotes the
T16782 26-28 IN denotes of
T16781 57-65 VBN denotes provided
T16780 20-21 -RRB- denotes )
T16779 12-20 JJ denotes upstream
T16778 11-12 -LRB- denotes (
T16777 5-10 JJ denotes short
T16776 22-25 NN denotes arm
T16775 1-4 DT denotes The
T16774 0-206 sentence denotes The short (upstream) arm of the targeting construct was provided by a 2.7-kb HindIII-BamHI fragment, containing exons 5 and 6, which was inserted into the pPNT vector upstream of the PGK-Neo cassette [48].
R4972 T16775 T16776 det The,arm
R4973 T16776 T16781 nsubjpass arm,provided
R4974 T16777 T16776 amod short,arm
R4975 T16778 T16776 punct (,arm
R4976 T16779 T16776 amod upstream,arm
R4977 T16780 T16776 punct ),arm
R4978 T16782 T16776 prep of,arm
R4979 T16783 T16784 det the,construct
R4980 T16784 T16782 pobj construct,of
R4981 T16785 T16784 compound targeting,construct
R4982 T16786 T16781 auxpass was,provided
R4983 T16787 T16781 agent by,provided
R4984 T16788 T16789 det a,fragment
R4985 T16789 T16787 pobj fragment,by
R4986 T16790 T16791 nummod 2.7,kb
R4987 T16791 T16789 compound kb,fragment
R4988 T16792 T16791 punct -,kb
R4989 T16793 T16794 compound HindIII,BamHI
R4990 T16794 T16789 compound BamHI,fragment
R4991 T16795 T16794 punct -,BamHI
R4992 T16796 T16789 punct ", ",fragment
R4993 T16797 T16789 acl containing,fragment
R4994 T16798 T16799 nmod exons,5
R4995 T16799 T16797 dobj 5,containing
R4996 T16800 T16799 cc and,5
R4997 T16801 T16799 conj 6,5
R4998 T16802 T16789 punct ", ",fragment
R4999 T16803 T16804 dep which,inserted
R5000 T16804 T16789 relcl inserted,fragment
R5001 T16805 T16804 auxpass was,inserted
R5002 T16806 T16804 prep into,inserted
R5003 T16807 T16808 det the,vector
R5004 T16808 T16806 pobj vector,into
R5005 T16809 T16808 compound pPNT,vector
R5006 T16810 T16804 advmod upstream,inserted
R5007 T16811 T16810 prep of,upstream
R5008 T16812 T16813 det the,cassette
R5009 T16813 T16811 pobj cassette,of
R5010 T16814 T16815 compound PGK,Neo
R5011 T16815 T16813 compound Neo,cassette
R5012 T16816 T16815 punct -,Neo
R5013 T16817 T16818 punct [,48
R5014 T16818 T16804 parataxis 48,inserted
R5015 T16819 T16818 punct ],48
R5016 T16820 T16781 punct .,provided

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T16644 192-200 SO:0005853 denotes cassette
T16643 161-167 SO:0000440 denotes vector
T16642 113-118 SO:0000147 denotes exons
T16641 86-91 PR:P23940 denotes BamHI
T16640 78-85 PR:P43870 denotes HindIII

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T16679 138-146 SO_EXT:sequence_insertion_process denotes inserted
T16677 86-91 PR_EXT:P23940 denotes BamHI
T16676 78-85 PR_EXT:P43870 denotes HindIII
T16675 76-77 CHEBI_SO_EXT:base denotes b
T16674 43-52 SO_EXT:engineered_biological_sequence denotes construct
T16673 12-20 SO_EXT:sequence_upstreamness denotes upstream
T16684 192-200 SO_EXT:0005853 denotes cassette
T16683 188-191 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes Neo
T16682 184-187 GO_EXT:phosphoglycerate_kinase denotes PGK
T16681 168-176 SO_EXT:sequence_upstreamness denotes upstream
T16680 161-167 SO_EXT:0000440 denotes vector
T16678 113-118 SO_EXT:0000147 denotes exons