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PMC:1382200 / 29556-30642 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T16229 1085-1086 . denotes .
T16228 1075-1085 NNS denotes conditions
T16227 1062-1074 JJ denotes non-standard
T16226 1059-1061 IN denotes in
T16225 1048-1058 NN denotes sequencing
T16224 1039-1047 VBN denotes repeated
T16223 1036-1038 IN denotes by
T16222 1017-1023 RB denotes firmly
T16221 1014-1016 VB denotes be
T16220 1009-1013 RB denotes only
T16219 1003-1008 MD denotes could
T16218 1024-1035 VBN denotes established
T16217 997-1002 WDT denotes which
T16216 976-986 JJ denotes repetitive
T16215 987-996 NNS denotes sequences
T16214 970-975 JJ denotes short
T16213 967-969 IN denotes to
T16212 953-966 VBG denotes corresponding
T16211 942-947 JJ denotes small
T16210 948-952 NNS denotes gaps
T16209 934-941 JJ denotes several
T16208 931-933 RP denotes in
T16207 924-930 VBN denotes filled
T16206 919-923 RB denotes also
T16205 915-918 CC denotes and
T16204 913-915 , denotes ,
T16203 897-903 JJ denotes public
T16202 904-913 NNS denotes databases
T16201 893-896 DT denotes the
T16200 888-892 IN denotes with
T16199 878-887 RB denotes precisely
T16198 871-877 VBD denotes agreed
T16197 851-860 VBN denotes submitted
T16196 861-870 NNS denotes sequences
T16195 847-850 DT denotes The
T16194 846-1086 sentence denotes The submitted sequences agreed precisely with the public databases, and also filled in several small gaps corresponding to short repetitive sequences which could only be firmly established by repeated sequencing in non-standard conditions.
T16193 845-846 . denotes .
T16192 844-845 -RRB- denotes )
T16191 832-835 NN denotes no.
T16190 822-831 NN denotes accession
T16189 836-844 NN denotes AF497625
T16188 821-822 -LRB- denotes (
T16187 813-820 NNP denotes GenBank
T16186 810-812 IN denotes to
T16185 795-799 VBD denotes were
T16184 800-809 VBN denotes submitted
T16183 790-794 NNS denotes data
T16182 786-789 DT denotes the
T16181 782-785 CC denotes and
T16180 774-781 NNS denotes strands
T16179 769-773 DT denotes both
T16178 766-768 IN denotes on
T16177 755-765 RB denotes completely
T16176 740-744 VBD denotes were
T16175 745-754 VBN denotes sequenced
T16174 733-739 NNS denotes clones
T16173 727-732 DT denotes These
T16172 726-846 sentence denotes These clones were sequenced completely on both strands and the data were submitted to GenBank (accession no. AF497625).
T16171 725-726 . denotes .
T16170 723-725 CD denotes 15
T16169 716-722 NN denotes intron
T16168 713-715 IN denotes in
T16167 702-707 NN denotes BamHI
T16166 708-712 NN denotes site
T16165 700-701 DT denotes a
T16164 697-699 IN denotes to
T16163 695-696 CD denotes 3
T16162 688-694 NN denotes intron
T16161 685-687 IN denotes in
T16160 674-679 NN denotes BamHI
T16159 680-684 NN denotes site
T16158 672-673 DT denotes a
T16157 667-671 IN denotes from
T16156 657-666 VBG denotes extending
T16155 655-657 , denotes ,
T16154 653-655 NN denotes bp
T16153 646-652 CD denotes 15,354
T16152 637-645 VBG denotes covering
T16151 623-627 VBD denotes were
T16150 628-636 VBN denotes obtained
T16149 608-615 JJ denotes genomic
T16148 616-622 NNS denotes clones
T16147 596-607 VBG denotes Overlapping
T16146 595-726 sentence denotes Overlapping genomic clones were obtained covering 15,354 bp, extending from a BamHI site in intron 3 to a BamHI site in intron 15.
T16145 594-595 . denotes .
T16144 592-594 CD denotes II
T16143 586-587 HYPH denotes -
T16142 587-591 NN denotes Dash
T16141 585-586 NN denotes λ
T16140 582-584 IN denotes in
T16139 566-573 JJ denotes genomic
T16138 560-565 NN denotes mouse
T16137 554-559 CD denotes 129Sv
T16136 574-581 NN denotes library
T16135 552-553 DT denotes a
T16134 545-551 VB denotes screen
T16133 542-544 TO denotes to
T16132 537-541 VBN denotes used
T16131 533-536 CC denotes and
T16130 519-522 VBD denotes was
T16129 514-518 NN denotes cDNA
T16128 509-513 DT denotes this
T16127 506-508 IN denotes of
T16126 523-532 VBN denotes subcloned
T16125 497-505 NN denotes fragment
T16124 495-496 DT denotes A
T16123 494-595 sentence denotes A fragment of this cDNA was subcloned and used to screen a 129Sv mouse genomic library in λ-Dash II.
T16122 493-494 . denotes .
T16121 481-486 NN denotes polyA
T16120 487-493 NN denotes signal
T16119 477-480 DT denotes the
T16118 474-476 IN denotes to
T16117 469-470 HYPH denotes -
T16116 468-469 SYM denotes '
T16115 467-468 CD denotes 3
T16114 470-473 NN denotes UTR
T16113 463-466 DT denotes the
T16112 453-462 IN denotes including
T16111 451-453 , denotes ,
T16110 446-451 CD denotes 2,101
T16109 437-445 NN denotes position
T16108 434-436 IN denotes at
T16107 423-427 NN denotes stop
T16106 428-433 NN denotes codon
T16105 419-422 DT denotes the
T16104 416-418 IN denotes to
T16103 400-406 NN denotes coding
T16102 407-415 NN denotes sequence
T16101 396-399 DT denotes the
T16100 393-395 IN denotes of
T16099 389-392 CD denotes 247
T16098 380-388 NN denotes position
T16097 375-379 IN denotes from
T16096 366-374 NN denotes sequence
T16095 363-365 IN denotes of
T16094 359-360 HYPH denotes -
T16093 360-362 NN denotes kb
T16092 356-359 CD denotes 2.8
T16091 348-355 VB denotes contain
T16090 345-347 TO denotes to
T16089 335-338 VBD denotes was
T16088 339-344 VBN denotes found
T16087 332-334 PRP denotes It
T16086 331-494 sentence denotes It was found to contain 2.8-kb of sequence from position 247 of the coding sequence to the stop codon at position 2,101, including the 3'-UTR to the polyA signal.
T16085 330-331 . denotes .
T16084 329-330 -RRB- denotes )
T16083 323-325 , denotes ,
T16082 313-323 NNP denotes Consortium
T16081 307-312 NNP denotes Image
T16080 305-307 , denotes ,
T16079 299-305 CD denotes 606689
T16078 298-299 : denotes :
T16077 293-298 NNP denotes Image
T16076 291-293 , denotes ,
T16075 285-291 CD denotes 807416
T16074 283-285 , denotes ,
T16073 281-283 NN denotes Id
T16072 275-280 NN denotes dbEST
T16071 325-329 NNP denotes LLNL
T16070 274-275 -LRB- denotes (
T16069 260-263 VBD denotes was
T16068 247-249 CD denotes 80
T16067 246-247 HYPH denotes -
T16066 250-251 NN denotes k
T16065 245-246 NN denotes m
T16064 239-244 NN denotes mouse
T16063 252-259 NN denotes subunit
T16062 235-238 DT denotes the
T16061 232-234 IN denotes of
T16060 224-231 NN denotes portion
T16059 222-223 DT denotes a
T16058 213-221 VBG denotes encoding
T16057 264-273 VBN denotes purchased
T16056 202-206 NN denotes cDNA
T16055 207-212 NN denotes clone
T16054 200-201 DT denotes A
T16053 199-331 sentence denotes A cDNA clone encoding a portion of the mouse m-80 k subunit was purchased (dbEST Id, 807416, Image:606689, Image Consortium, LLNL).
T16052 198-199 . denotes .
T16051 197-198 CD denotes 1
T16050 186-196 NN denotes chromosome
T16049 183-185 IN denotes on
T16048 179-180 HYPH denotes -
T16047 180-182 NN denotes kb
T16046 177-179 CD denotes 50
T16045 172-176 IN denotes over
T16044 162-171 VBG denotes extending
T16043 156-161 NNS denotes exons
T16042 153-155 CD denotes 21
T16041 150-152 IN denotes of
T16040 141-149 VBZ denotes consists
T16039 137-140 CC denotes and
T16038 135-136 -RRB- denotes )
T16037 131-133 CD denotes 80
T16036 130-131 HYPH denotes -
T16035 129-130 NN denotes m
T16034 134-135 NN denotes k
T16033 128-129 -LRB- denotes (
T16032 114-119 JJ denotes large
T16031 105-106 HYPH denotes -
T16030 106-113 NN denotes calpain
T16029 104-105 NN denotes m
T16028 120-127 NN denotes subunit
T16027 100-103 DT denotes the
T16026 97-99 IN denotes of
T16025 85-90 NN denotes amino
T16024 81-84 CD denotes 700
T16023 91-96 NNS denotes acids
T16022 77-80 DT denotes the
T16021 69-76 VBZ denotes encodes
T16020 58-63 NN denotes Capn2
T16019 52-57 NN denotes mouse
T16018 64-68 NN denotes gene
T16017 48-51 DT denotes The
T16016 47-199 sentence denotes The mouse Capn2 gene encodes the 700 amino acids of the m-calpain large subunit (m-80 k) and consists of 21 exons extending over 50-kb on chromosome 1.
T16015 36-41 NN denotes Capn2
T16014 30-35 NN denotes mouse
T16013 42-47 NN denotes locus
T16012 26-29 DT denotes the
T16011 23-25 IN denotes of
T16010 12-22 NN denotes sequencing
T16009 8-11 CC denotes and
T16008 0-7 NN denotes Cloning
R4705 T16009 T16008 cc and,Cloning
R4706 T16010 T16008 conj sequencing,Cloning
R4707 T16011 T16008 prep of,Cloning
R4708 T16012 T16013 det the,locus
R4709 T16013 T16011 pobj locus,of
R4710 T16014 T16013 compound mouse,locus
R4711 T16015 T16013 compound Capn2,locus
R4712 T16017 T16018 det The,gene
R4713 T16018 T16021 nsubj gene,encodes
R4714 T16019 T16018 compound mouse,gene
R4715 T16020 T16018 compound Capn2,gene
R4716 T16022 T16023 det the,acids
R4717 T16023 T16021 dobj acids,encodes
R4718 T16024 T16023 nummod 700,acids
R4719 T16025 T16023 compound amino,acids
R4720 T16026 T16023 prep of,acids
R4721 T16027 T16028 det the,subunit
R4722 T16028 T16026 pobj subunit,of
R4723 T16029 T16030 nmod m,calpain
R4724 T16030 T16028 nmod calpain,subunit
R4725 T16031 T16030 punct -,calpain
R4726 T16032 T16028 amod large,subunit
R4727 T16033 T16034 punct (,k
R4728 T16034 T16028 parataxis k,subunit
R4729 T16035 T16034 nmod m,k
R4730 T16036 T16034 punct -,k
R4731 T16037 T16034 nummod 80,k
R4732 T16038 T16034 punct ),k
R4733 T16039 T16021 cc and,encodes
R4734 T16040 T16021 conj consists,encodes
R4735 T16041 T16040 prep of,consists
R4736 T16042 T16043 nummod 21,exons
R4737 T16043 T16041 pobj exons,of
R4738 T16044 T16043 acl extending,exons
R4739 T16045 T16044 prep over,extending
R4740 T16046 T16047 nummod 50,kb
R4741 T16047 T16045 pobj kb,over
R4742 T16048 T16047 punct -,kb
R4743 T16049 T16044 prep on,extending
R4744 T16050 T16049 pobj chromosome,on
R4745 T16051 T16050 nummod 1,chromosome
R4746 T16052 T16021 punct .,encodes
R4747 T16054 T16055 det A,clone
R4748 T16055 T16057 nsubjpass clone,purchased
R4749 T16056 T16055 compound cDNA,clone
R4750 T16058 T16055 acl encoding,clone
R4751 T16059 T16060 det a,portion
R4752 T16060 T16058 dobj portion,encoding
R4753 T16061 T16060 prep of,portion
R4754 T16062 T16063 det the,subunit
R4755 T16063 T16061 pobj subunit,of
R4756 T16064 T16063 nmod mouse,subunit
R4757 T16065 T16066 nmod m,k
R4758 T16066 T16063 compound k,subunit
R4759 T16067 T16066 punct -,k
R4760 T16068 T16066 nummod 80,k
R4761 T16069 T16057 auxpass was,purchased
R4762 T16070 T16071 punct (,LLNL
R4763 T16071 T16057 parataxis LLNL,purchased
R4764 T16072 T16073 compound dbEST,Id
R4765 T16073 T16071 dep Id,LLNL
R4766 T16074 T16071 punct ", ",LLNL
R4767 T16075 T16071 dep 807416,LLNL
R4768 T16076 T16071 punct ", ",LLNL
R4769 T16077 T16071 dep Image,LLNL
R4770 T16078 T16071 punct :,LLNL
R4771 T16079 T16071 dep 606689,LLNL
R4772 T16080 T16071 punct ", ",LLNL
R4773 T16081 T16082 compound Image,Consortium
R4774 T16082 T16071 dep Consortium,LLNL
R4775 T16083 T16071 punct ", ",LLNL
R4776 T16084 T16071 punct ),LLNL
R4777 T16085 T16057 punct .,purchased
R4778 T16087 T16088 nsubjpass It,found
R4779 T16089 T16088 auxpass was,found
R4780 T16090 T16091 aux to,contain
R4781 T16091 T16088 xcomp contain,found
R4782 T16092 T16093 nummod 2.8,kb
R4783 T16093 T16091 dobj kb,contain
R4784 T16094 T16093 punct -,kb
R4785 T16095 T16093 prep of,kb
R4786 T16096 T16095 pobj sequence,of
R4787 T16097 T16096 prep from,sequence
R4788 T16098 T16097 pobj position,from
R4789 T16099 T16098 nummod 247,position
R4790 T16100 T16098 prep of,position
R4791 T16101 T16102 det the,sequence
R4792 T16102 T16100 pobj sequence,of
R4793 T16103 T16102 compound coding,sequence
R4794 T16104 T16097 prep to,from
R4795 T16105 T16106 det the,codon
R4796 T16106 T16104 pobj codon,to
R4797 T16107 T16106 compound stop,codon
R4798 T16108 T16106 prep at,codon
R4799 T16109 T16108 pobj position,at
R4800 T16110 T16109 nummod "2,101",position
R4801 T16111 T16096 punct ", ",sequence
R4802 T16112 T16096 prep including,sequence
R4803 T16113 T16114 det the,UTR
R4804 T16114 T16112 pobj UTR,including
R4805 T16115 T16114 nummod 3,UTR
R4806 T16116 T16115 punct ',3
R4807 T16117 T16114 punct -,UTR
R4808 T16118 T16114 prep to,UTR
R4809 T16119 T16120 det the,signal
R4810 T16120 T16118 pobj signal,to
R4811 T16121 T16120 compound polyA,signal
R4812 T16122 T16088 punct .,found
R4813 T16124 T16125 det A,fragment
R4814 T16125 T16126 nsubjpass fragment,subcloned
R4815 T16127 T16125 prep of,fragment
R4816 T16128 T16129 det this,cDNA
R4817 T16129 T16127 pobj cDNA,of
R4818 T16130 T16126 auxpass was,subcloned
R4819 T16131 T16126 cc and,subcloned
R4820 T16132 T16126 conj used,subcloned
R4821 T16133 T16134 aux to,screen
R4822 T16134 T16132 advcl screen,used
R4823 T16135 T16136 det a,library
R4824 T16136 T16134 dobj library,screen
R4825 T16137 T16136 nummod 129Sv,library
R4826 T16138 T16136 nmod mouse,library
R4827 T16139 T16136 amod genomic,library
R4828 T16140 T16134 prep in,screen
R4829 T16141 T16142 compound λ,Dash
R4830 T16142 T16140 pobj Dash,in
R4831 T16143 T16142 punct -,Dash
R4832 T16144 T16142 nummod II,Dash
R4833 T16145 T16126 punct .,subcloned
R4834 T16147 T16148 amod Overlapping,clones
R4835 T16148 T16150 nsubjpass clones,obtained
R4836 T16149 T16148 amod genomic,clones
R4837 T16151 T16150 auxpass were,obtained
R4838 T16152 T16150 advcl covering,obtained
R4839 T16153 T16154 nummod "15,354",bp
R4840 T16154 T16152 dobj bp,covering
R4841 T16155 T16150 punct ", ",obtained
R4842 T16156 T16150 advcl extending,obtained
R4843 T16157 T16156 prep from,extending
R4844 T16158 T16159 det a,site
R4845 T16159 T16157 pobj site,from
R4846 T16160 T16159 compound BamHI,site
R4847 T16161 T16159 prep in,site
R4848 T16162 T16161 pobj intron,in
R4849 T16163 T16162 nummod 3,intron
R4850 T16164 T16157 prep to,from
R4851 T16165 T16166 det a,site
R4852 T16166 T16164 pobj site,to
R4853 T16167 T16166 compound BamHI,site
R4854 T16168 T16166 prep in,site
R4855 T16169 T16168 pobj intron,in
R4856 T16170 T16169 nummod 15,intron
R4857 T16171 T16150 punct .,obtained
R4858 T16173 T16174 det These,clones
R4859 T16174 T16175 nsubjpass clones,sequenced
R4860 T16176 T16175 auxpass were,sequenced
R4861 T16177 T16175 advmod completely,sequenced
R4862 T16178 T16175 prep on,sequenced
R4863 T16179 T16180 det both,strands
R4864 T16180 T16178 pobj strands,on
R4865 T16181 T16175 cc and,sequenced
R4866 T16182 T16183 det the,data
R4867 T16183 T16184 nsubjpass data,submitted
R4868 T16184 T16175 conj submitted,sequenced
R4869 T16185 T16184 auxpass were,submitted
R4870 T16186 T16184 prep to,submitted
R4871 T16187 T16186 pobj GenBank,to
R4872 T16188 T16189 punct (,AF497625
R4873 T16189 T16184 parataxis AF497625,submitted
R4874 T16190 T16189 compound accession,AF497625
R4875 T16191 T16189 compound no.,AF497625
R4876 T16192 T16189 punct ),AF497625
R4877 T16193 T16184 punct .,submitted
R4878 T16195 T16196 det The,sequences
R4879 T16196 T16198 nsubj sequences,agreed
R4880 T16197 T16196 amod submitted,sequences
R4881 T16199 T16198 advmod precisely,agreed
R4882 T16200 T16198 prep with,agreed
R4883 T16201 T16202 det the,databases
R4884 T16202 T16200 pobj databases,with
R4885 T16203 T16202 amod public,databases
R4886 T16204 T16198 punct ", ",agreed
R4887 T16205 T16198 cc and,agreed
R4888 T16206 T16207 advmod also,filled
R4889 T16207 T16198 conj filled,agreed
R4890 T16208 T16207 prt in,filled
R4891 T16209 T16210 amod several,gaps
R4892 T16210 T16207 dobj gaps,filled
R4893 T16211 T16210 amod small,gaps
R4894 T16212 T16210 acl corresponding,gaps
R4895 T16213 T16212 prep to,corresponding
R4896 T16214 T16215 amod short,sequences
R4897 T16215 T16213 pobj sequences,to
R4898 T16216 T16215 amod repetitive,sequences
R4899 T16217 T16218 dep which,established
R4900 T16218 T16215 relcl established,sequences
R4901 T16219 T16218 aux could,established
R4902 T16220 T16218 advmod only,established
R4903 T16221 T16218 auxpass be,established
R4904 T16222 T16218 advmod firmly,established
R4905 T16223 T16218 prep by,established
R4906 T16224 T16225 amod repeated,sequencing
R4907 T16225 T16223 pobj sequencing,by
R4908 T16226 T16225 prep in,sequencing
R4909 T16227 T16228 amod non-standard,conditions
R4910 T16228 T16226 pobj conditions,in
R4911 T16229 T16198 punct .,agreed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T15967 948-952 SO:0000730 denotes gaps
T15966 708-722 SO:0001014 denotes site in intron
T15965 702-707 PR:P23940 denotes BamHI
T15964 680-694 SO:0001014 denotes site in intron
T15963 674-679 PR:P23940 denotes BamHI
T15962 653-655 SO:0000028 denotes bp
T15961 608-622 SO:0000040 denotes genomic clones
T15960 585-586 SO:0000754 denotes λ
T15959 566-573 SO:0001026 denotes genomic
T15958 560-565 NCBITaxon:10088 denotes mouse
T15957 481-493 SO:0000551 denotes polyA signal
T15956 467-473 SO:0000204 denotes 3'-UTR
T15955 423-433 SO:0000319 denotes stop codon
T15954 245-259 PR:000005015 denotes m-80 k subunit
T15953 239-244 NCBITaxon:10088 denotes mouse
T15952 202-212 SO:0000317 denotes cDNA clone
T15951 156-161 SO:0000147 denotes exons
T15950 129-135 PR:000005015 denotes m-80 k
T15949 104-127 PR:000005015 denotes m-calpain large subunit
T15948 64-68 SO:0000704 denotes gene
T15947 58-63 PR:000005015 denotes Capn2
T15946 52-57 NCBITaxon:10088 denotes mouse
T15945 36-41 PR:000005015 denotes Capn2
T15944 30-35 NCBITaxon:10088 denotes mouse

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T16007 987-996 SO_EXT:biological_sequence denotes sequences
T16006 976-986 SO_EXT:sequence_repeat_unit_or_region denotes repetitive
T16005 948-952 SO_EXT:0000730 denotes gaps
T16004 861-870 SO_EXT:biological_sequence denotes sequences
T16003 733-739 SO_EXT:sequence_cloned_entity denotes clones
T16002 708-722 SO_EXT:0001014 denotes site in intron
T16001 702-707 PR_EXT:P23940 denotes BamHI
T16000 680-694 SO_EXT:0001014 denotes site in intron
T15999 674-679 PR_EXT:P23940 denotes BamHI
T15998 653-655 SO_EXT:0000028 denotes bp
T15997 608-622 SO_EXT:0000040 denotes genomic clones
T15996 585-586 SO_EXT:0000754 denotes λ
T15995 566-573 SO_EXT:0001026 denotes genomic
T15994 560-565 NCBITaxon:10088 denotes mouse
T15992 485-486 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T15991 481-493 SO_EXT:0000551 denotes polyA signal
T15990 467-473 SO_EXT:0000204 denotes 3'-UTR
T15989 423-433 SO_EXT:0000319 denotes stop codon
T15988 400-415 SO_EXT:coding_sequence denotes coding sequence
T15987 366-374 SO_EXT:biological_sequence denotes sequence
T15986 361-362 CHEBI_SO_EXT:base denotes b
T15985 245-259 PR_EXT:000005015 denotes m-80 k subunit
T15984 239-244 NCBITaxon:10088 denotes mouse
T15983 213-221 SO_EXT:sequence_coding_function denotes encoding
T15982 202-212 SO_EXT:0000317 denotes cDNA clone
T15981 186-196 GO_SO_EXT:chromosome denotes chromosome
T15980 181-182 CHEBI_SO_EXT:base denotes b
T15979 156-161 SO_EXT:0000147 denotes exons
T15978 129-135 PR_EXT:000005015 denotes m-80 k
T15977 104-127 PR_EXT:000005015 denotes m-calpain large subunit
T15976 104-113 GO_PR_EXT:calpain_2_complex denotes m-calpain
T15975 85-96 CHEBI_SO_EXT:amino_acid denotes amino acids
T15974 69-76 SO_EXT:sequence_coding_function denotes encodes
T15973 64-68 SO_EXT:0000704 denotes gene
T15972 58-63 PR_EXT:000005015 denotes Capn2
T15971 52-57 NCBITaxon:10088 denotes mouse
T15970 36-41 PR_EXT:000005015 denotes Capn2
T15969 30-35 NCBITaxon:10088 denotes mouse
T15968 0-7 SO_EXT:sequence_cloning_process denotes Cloning
T15993 514-518 SO_EXT:cDNA denotes cDNA