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PMC:1382200 / 27386-27964 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T15017 577-578 . denotes .
T15016 569-577 NNS denotes attempts
T15015 563-568 DT denotes these
T15014 550-553 RB denotes far
T15013 545-549 RB denotes thus
T15012 541-544 VBZ denotes has
T15011 524-530 NN denotes rescue
T15010 531-540 NN denotes transgene
T15009 520-523 DT denotes the
T15008 517-519 IN denotes of
T15007 506-516 NN denotes expression
T15006 499-505 JJ denotes stable
T15005 489-498 VBG denotes achieving
T15004 486-488 IN denotes in
T15003 475-485 NN denotes difficulty
T15002 473-475 , denotes ,
T15001 554-562 VBN denotes hampered
T15000 466-473 RB denotes However
T14999 465-578 sentence denotes However, difficulty in achieving stable expression of the rescue transgene has thus far hampered these attempts.
T14998 464-465 . denotes .
T14997 457-459 VBZ denotes is
T14996 444-445 HYPH denotes -
T14995 445-449 NN denotes type
T14994 440-444 JJ denotes wild
T14993 429-439 JJ denotes endogenous
T14992 419-428 VBG denotes remaining
T14991 450-456 NN denotes allele
T14990 415-418 DT denotes the
T14989 460-464 VBN denotes lost
T14988 408-414 IN denotes before
T14987 399-407 NN denotes activity
T14986 390-391 HYPH denotes -
T14985 391-398 NN denotes calpain
T14984 389-390 NN denotes m
T14983 369-381 RB denotes preemptively
T14982 382-388 VB denotes rescue
T14981 366-368 TO denotes to
T14980 360-365 NN denotes order
T14979 357-359 IN denotes in
T14978 346-356 NN denotes conversion
T14977 341-345 NN denotes gene
T14976 338-340 IN denotes to
T14975 332-337 JJ denotes prior
T14974 315-321 NN denotes rescue
T14973 310-314 NN denotes cDNA
T14972 304-309 NN denotes Capn2
T14971 322-331 NN denotes transgene
T14970 302-303 DT denotes a
T14969 297-301 IN denotes from
T14968 287-288 NN denotes k
T14967 284-286 CD denotes 80
T14966 283-284 HYPH denotes -
T14965 282-283 NN denotes m
T14964 289-296 NN denotes subunit
T14963 278-281 DT denotes the
T14962 270-277 VB denotes express
T14961 267-269 TO denotes to
T14960 263-266 RB denotes way
T14959 257-262 RB denotes under
T14958 253-256 VBP denotes are
T14957 245-252 NNS denotes Efforts
T14956 244-465 sentence denotes Efforts are under way to express the m-80 k subunit from a Capn2 cDNA rescue transgene prior to gene conversion in order to preemptively rescue m-calpain activity before the remaining endogenous wild-type allele is lost.
T14955 243-244 . denotes .
T14954 238-243 NNS denotes cells
T14953 235-237 NN denotes ES
T14952 232-234 IN denotes of
T14951 222-231 NN denotes selection
T14950 215-221 JJ denotes clonal
T14949 212-214 CC denotes or
T14948 202-211 NN denotes viability
T14947 197-201 NN denotes cell
T14946 177-184 RB denotes somehow
T14945 164-170 NN denotes mutant
T14944 153-163 JJ denotes homozygous
T14943 171-176 NN denotes state
T14942 149-152 DT denotes the
T14941 185-196 VBZ denotes compromises
T14940 144-148 IN denotes that
T14939 130-134 NN denotes G418
T14938 127-129 IN denotes of
T14937 112-126 NNS denotes concentrations
T14936 107-111 JJ denotes high
T14935 104-106 IN denotes in
T14934 97-103 NNS denotes clones
T14933 94-96 IN denotes of
T14932 84-93 NN denotes selection
T14931 81-83 IN denotes by
T14930 75-80 NNS denotes cells
T14929 72-74 NN denotes ES
T14928 70-71 SYM denotes -
T14927 69-70 HYPH denotes /
T14926 68-69 SYM denotes -
T14925 63-68 NN denotes Capn2
T14924 60-62 IN denotes to
T14923 58-59 SYM denotes -
T14922 57-58 HYPH denotes /
T14921 56-57 SYM denotes +
T14920 51-56 NN denotes Capn2
T14919 48-50 IN denotes of
T14918 37-47 NN denotes conversion
T14917 32-36 NN denotes gene
T14916 24-31 VB denotes achieve
T14915 21-23 TO denotes to
T14914 135-143 VBZ denotes suggests
T14913 4-12 VBN denotes repeated
T14912 13-20 NN denotes failure
T14911 0-3 DT denotes The
R4274 T14911 T14912 det The,failure
R4275 T14912 T14914 nsubj failure,suggests
R4277 T14913 T14912 amod repeated,failure
R4278 T14915 T14916 aux to,achieve
R4279 T14916 T14912 acl achieve,failure
R4280 T14917 T14918 compound gene,conversion
R4282 T14918 T14916 dobj conversion,achieve
R4283 T14919 T14918 prep of,conversion
R4284 T14920 T14919 pobj Capn2,of
R4286 T14921 T14920 punct +,Capn2
R4287 T14922 T14920 punct /,Capn2
R4288 T14923 T14920 punct -,Capn2
R4290 T14924 T14918 prep to,conversion
R4291 T14925 T14924 pobj Capn2,to
R4293 T14926 T14925 punct -,Capn2
R4294 T14927 T14925 punct /,Capn2
R4295 T14928 T14925 punct -,Capn2
R4297 T14929 T14930 compound ES,cells
R4298 T14930 T14918 appos cells,conversion
R4300 T14931 T14918 prep by,conversion
R4301 T14932 T14931 pobj selection,by
R4302 T14933 T14932 prep of,selection
R4304 T14934 T14933 pobj clones,of
R4305 T14935 T14932 prep in,selection
R4307 T14936 T14937 amod high,concentrations
R4308 T14937 T14935 pobj concentrations,in
R4309 T14938 T14937 prep of,concentrations
R4311 T14939 T14938 pobj G418,of
R4312 T14940 T14941 mark that,compromises
R4314 T14941 T14914 ccomp compromises,suggests
R4315 T14942 T14943 det the,state
R4316 T14943 T14941 nsubj state,compromises
R4318 T14944 T14943 amod homozygous,state
R4319 T14945 T14943 compound mutant,state
R4320 T14946 T14941 advmod somehow,compromises
R4322 T14947 T14948 compound cell,viability
R4323 T14948 T14941 dobj viability,compromises
R4325 T14949 T14948 cc or,viability
R4326 T14950 T14951 amod clonal,selection
R4327 T14951 T14948 conj selection,viability
R4329 T14952 T14951 prep of,selection
R4330 T14953 T14954 compound ES,cells
R4331 T14954 T14952 pobj cells,of
R4332 T14955 T14914 punct .,suggests
R4334 T14957 T14958 nsubj Efforts,are
R4335 T14959 T14960 advmod under,way
R4337 T14960 T14958 advmod way,are
R4338 T14961 T14962 aux to,express
R4340 T14962 T14958 xcomp express,are
R4341 T14963 T14964 det the,subunit
R4344 T14964 T14962 dobj subunit,express
R4345 T14965 T14964 nmod m,subunit
R4346 T14966 T14965 punct -,m
R4348 T14967 T14965 nummod 80,m
R4349 T14968 T14964 compound k,subunit
R4350 T14969 T14964 prep from,subunit
R4352 T14970 T14971 det a,transgene
R4353 T14971 T14969 pobj transgene,from
R4355 T14972 T14971 compound Capn2,transgene
R4356 T14973 T14971 compound cDNA,transgene
R4358 T14974 T14971 compound rescue,transgene
R4359 T14975 T14976 amod prior,to
R4360 T14976 T14962 prep to,express
R4362 T14977 T14978 compound gene,conversion
R4363 T14978 T14976 pobj conversion,to
R4364 T14979 T14962 prep in,express
R4366 T14980 T14979 pobj order,in
R4367 T14981 T14982 aux to,rescue
R4369 T14982 T14980 acl rescue,order
R4370 T14983 T14982 advmod preemptively,rescue
R4371 T14984 T14985 compound m,calpain
R4373 T14985 T14987 compound calpain,activity
R4374 T14986 T14985 punct -,calpain
R4375 T14987 T14982 dobj activity,rescue
R4377 T14988 T14989 mark before,lost
R4378 T14989 T14982 advcl lost,rescue
R4379 T14990 T14991 det the,allele
R4381 T14991 T14989 nsubjpass allele,lost
R4382 T14992 T14991 amod remaining,allele
R4383 T14993 T14991 amod endogenous,allele
R4386 T14994 T14995 amod wild,type
R4387 T14995 T14991 compound type,allele
R4388 T14996 T14995 punct -,type
R4390 T14997 T14989 auxpass is,lost
R4391 T14998 T14958 punct .,are
R4393 T15000 T15001 advmod However,hampered
R4395 T15002 T15001 punct ", ",hampered
R4396 T15003 T15001 nsubj difficulty,hampered
R4398 T15004 T15003 prep in,difficulty
R4399 T15005 T15004 pcomp achieving,in
R4400 T15006 T15007 amod stable,expression
R4402 T15007 T15005 dobj expression,achieving
R4403 T15008 T15007 prep of,expression
R4404 T15009 T15010 det the,transgene
R4406 T15010 T15008 pobj transgene,of
R4407 T15011 T15010 compound rescue,transgene
R4409 T15012 T15001 aux has,hampered
R4410 T15013 T15014 advmod thus,far
R4411 T15014 T15001 advmod far,hampered
R4413 T15015 T15016 det these,attempts
R4414 T15016 T15001 dobj attempts,hampered
R4416 T15017 T15001 punct .,hampered

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12390 72-80 CL:0002322 denotes ES cells
T12389 63-68 PR:000005015 denotes Capn2
T12388 51-56 PR:000005015 denotes Capn2
T12387 32-47 GO:0035822 denotes gene conversion
T12386 32-36 SO:0000704 denotes gene
T12396 322-331 SO:0000902 denotes transgene
T12395 304-309 PR:000005015 denotes Capn2
T12394 282-296 PR:000005015 denotes m-80 k subunit
T12393 270-277 GO:0010467 denotes express
T12392 235-243 CL:0002322 denotes ES cells
T12391 130-134 CHEBI:42768 denotes G418
T12401 531-540 SO:0000902 denotes transgene
T12400 506-516 GO:0010467 denotes expression
T12399 450-456 SO:0001023 denotes allele
T12398 341-356 GO:0035822 denotes gene conversion
T12397 341-345 SO:0000704 denotes gene

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12799 531-540 SO_EXT:0000902 denotes transgene
T12798 524-530 SO_EXT:sequence_rescue_process denotes rescue
T12797 506-516 GO:0010467 denotes expression
T12796 450-456 SO_EXT:0001023 denotes allele
T12795 440-449 SO_EXT:wild_type_entity_or_quality denotes wild-type
T12794 389-398 GO_PR_EXT:calpain_2_complex denotes m-calpain
T12793 382-388 SO_EXT:sequence_rescue_process denotes rescue
T12792 341-356 GO:0035822 denotes gene conversion
T12791 341-345 SO_EXT:0000704 denotes gene
T12790 322-331 SO_EXT:0000902 denotes transgene
T12789 315-321 SO_EXT:sequence_rescue_process denotes rescue
T12788 310-314 SO_EXT:cDNA denotes cDNA
T12787 304-309 PR_EXT:000005015 denotes Capn2
T12786 282-296 PR_EXT:000005015 denotes m-80 k subunit
T12785 270-277 GO:0010467 denotes express
T12784 238-243 CL_GO_EXT:cell denotes cells
T12783 235-243 CL:0002322 denotes ES cells
T12782 215-221 SO_EXT:sequence_cloned_entity denotes clonal
T12781 197-201 CL_GO_EXT:cell denotes cell
T12780 164-170 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12779 130-134 CHEBI:42768 denotes G418
T12778 97-103 SO_EXT:sequence_cloned_entity denotes clones
T12777 75-80 CL_GO_EXT:cell denotes cells
T12776 72-80 CL:0002322 denotes ES cells
T12775 70-71 SO_EXT:sequence_nullness_or_absence denotes -
T12774 68-69 SO_EXT:sequence_nullness_or_absence denotes -
T12773 63-68 PR_EXT:000005015 denotes Capn2
T12772 58-59 SO_EXT:sequence_nullness_or_absence denotes -
T12771 56-57 SO_EXT:normal_or_wild_type_or_present denotes +
T12770 51-56 PR_EXT:000005015 denotes Capn2
T12769 32-47 GO:0035822 denotes gene conversion
T12768 32-36 SO_EXT:0000704 denotes gene