
PMC:1382200 / 26730-27385
Annnotations
craft-sa-dev
{"project":"craft-sa-dev","denotations":[{"id":"T14885","span":{"begin":507,"end":655},"obj":"sentence"},{"id":"T14884","span":{"begin":506,"end":507},"obj":"."},{"id":"T14883","span":{"begin":501,"end":506},"obj":"NNS"},{"id":"T14882","span":{"begin":497,"end":500},"obj":"DT"},{"id":"T14881","span":{"begin":494,"end":496},"obj":"IN"},{"id":"T14880","span":{"begin":484,"end":493},"obj":"NN"},{"id":"T14879","span":{"begin":480,"end":483},"obj":"DT"},{"id":"T14878","span":{"begin":468,"end":479},"obj":"VBG"},{"id":"T14877","span":{"begin":464,"end":467},"obj":"IN"},{"id":"T14876","span":{"begin":453,"end":463},"obj":"JJ"},{"id":"T14875","span":{"begin":450,"end":452},"obj":"VBZ"},{"id":"T14874","span":{"begin":447,"end":449},"obj":"PRP"},{"id":"T14873","span":{"begin":443,"end":446},"obj":"CC"},{"id":"T14872","span":{"begin":441,"end":443},"obj":","},{"id":"T14871","span":{"begin":429,"end":434},"obj":"NN"},{"id":"T14870","span":{"begin":422,"end":428},"obj":"NN"},{"id":"T14869","span":{"begin":435,"end":441},"obj":"NN"},{"id":"T14868","span":{"begin":417,"end":421},"obj":"DT"},{"id":"T14867","span":{"begin":412,"end":416},"obj":"IN"},{"id":"T14866","span":{"begin":400,"end":402},"obj":"VBZ"},{"id":"T14865","span":{"begin":398,"end":400},"obj":","},{"id":"T14864","span":{"begin":391,"end":398},"obj":"NNS"},{"id":"T14863","span":{"begin":385,"end":390},"obj":"DT"},{"id":"T14862","span":{"begin":382,"end":384},"obj":"IN"},{"id":"T14861","span":{"begin":371,"end":381},"obj":"JJ"},{"id":"T14860","span":{"begin":364,"end":370},"obj":"NNS"},{"id":"T14859","span":{"begin":356,"end":363},"obj":"IN"},{"id":"T14858","span":{"begin":354,"end":356},"obj":","},{"id":"T14857","span":{"begin":346,"end":354},"obj":"NN"},{"id":"T14856","span":{"begin":338,"end":345},"obj":"NN"},{"id":"T14855","span":{"begin":335,"end":337},"obj":"IN"},{"id":"T14854","span":{"begin":322,"end":327},"obj":"NN"},{"id":"T14853","span":{"begin":328,"end":334},"obj":"NN"},{"id":"T14852","span":{"begin":320,"end":321},"obj":"DT"},{"id":"T14851","span":{"begin":403,"end":411},"obj":"VBN"},{"id":"T14850","span":{"begin":315,"end":319},"obj":"IN"},{"id":"T14849","span":{"begin":313,"end":315},"obj":","},{"id":"T14848","span":{"begin":306,"end":313},"obj":"RBR"},{"id":"T14847","span":{"begin":296,"end":305},"obj":"VBN"},{"id":"T14846","span":{"begin":293,"end":295},"obj":"IN"},{"id":"T14845","span":{"begin":291,"end":293},"obj":","},{"id":"T14844","span":{"begin":280,"end":291},"obj":"JJ"},{"id":"T14843","span":{"begin":277,"end":279},"obj":"VBZ"},{"id":"T14842","span":{"begin":274,"end":276},"obj":"PRP"},{"id":"T14841","span":{"begin":273,"end":507},"obj":"sentence"},{"id":"T14840","span":{"begin":272,"end":273},"obj":"."},{"id":"T14839","span":{"begin":254,"end":263},"obj":"NN"},{"id":"T14838","span":{"begin":245,"end":253},"obj":"NN"},{"id":"T14837","span":{"begin":264,"end":272},"obj":"NNS"},{"id":"T14836","span":{"begin":230,"end":244},"obj":"JJ"},{"id":"T14835","span":{"begin":227,"end":229},"obj":"IN"},{"id":"T14834","span":{"begin":216,"end":226},"obj":"NN"},{"id":"T14833","span":{"begin":212,"end":215},"obj":"DT"},{"id":"T14832","span":{"begin":209,"end":211},"obj":"IN"},{"id":"T14831","span":{"begin":206,"end":208},"obj":"CC"},{"id":"T14830","span":{"begin":195,"end":205},"obj":"NN"},{"id":"T14829","span":{"begin":188,"end":194},"obj":"NN"},{"id":"T14828","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T14827","span":{"begin":176,"end":184},"obj":"VBN"},{"id":"T14826","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T14825","span":{"begin":171,"end":173},"obj":","},{"id":"T14824","span":{"begin":163,"end":171},"obj":"NN"},{"id":"T14823","span":{"begin":155,"end":162},"obj":"NN"},{"id":"T14822","span":{"begin":152,"end":154},"obj":"IN"},{"id":"T14821","span":{"begin":138,"end":146},"obj":"JJ"},{"id":"T14820","span":{"begin":147,"end":151},"obj":"NN"},{"id":"T14819","span":{"begin":135,"end":137},"obj":"DT"},{"id":"T14818","span":{"begin":127,"end":134},"obj":"IN"},{"id":"T14817","span":{"begin":119,"end":126},"obj":"NN"},{"id":"T14816","span":{"begin":116,"end":118},"obj":"IN"},{"id":"T14815","span":{"begin":102,"end":104},"obj":"VB"},{"id":"T14814","span":{"begin":98,"end":101},"obj":"MD"},{"id":"T14813","span":{"begin":79,"end":90},"obj":"JJ"},{"id":"T14812","span":{"begin":67,"end":78},"obj":"JJ"},{"id":"T14811","span":{"begin":91,"end":97},"obj":"NN"},{"id":"T14810","span":{"begin":63,"end":66},"obj":"DT"},{"id":"T14809","span":{"begin":58,"end":62},"obj":"IN"},{"id":"T14808","span":{"begin":48,"end":51},"obj":"NN"},{"id":"T14807","span":{"begin":44,"end":47},"obj":"CC"},{"id":"T14806","span":{"begin":41,"end":43},"obj":"NN"},{"id":"T14805","span":{"begin":39,"end":40},"obj":"SYM"},{"id":"T14804","span":{"begin":38,"end":39},"obj":"HYPH"},{"id":"T14803","span":{"begin":37,"end":38},"obj":"SYM"},{"id":"T14802","span":{"begin":52,"end":57},"obj":"NNS"},{"id":"T14801","span":{"begin":32,"end":37},"obj":"NN"},{"id":"T14800","span":{"begin":105,"end":115},"obj":"VBN"},{"id":"T14799","span":{"begin":27,"end":31},"obj":"IN"},{"id":"T14798","span":{"begin":15,"end":17},"obj":"VB"},{"id":"T14797","span":{"begin":10,"end":14},"obj":"RB"},{"id":"T14796","span":{"begin":3,"end":9},"obj":"MD"},{"id":"T14795","span":{"begin":18,"end":26},"obj":"VBN"},{"id":"T14794","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T14909","span":{"begin":654,"end":655},"obj":"."},{"id":"T14908","span":{"begin":639,"end":648},"obj":"JJ"},{"id":"T14907","span":{"begin":649,"end":654},"obj":"NNS"},{"id":"T14906","span":{"begin":633,"end":638},"obj":"JJ"},{"id":"T14905","span":{"begin":630,"end":632},"obj":"IN"},{"id":"T14904","span":{"begin":623,"end":629},"obj":"JJ"},{"id":"T14903","span":{"begin":619,"end":622},"obj":"VBP"},{"id":"T14902","span":{"begin":614,"end":618},"obj":"WDT"},{"id":"T14901","span":{"begin":603,"end":607},"obj":"NN"},{"id":"T14900","span":{"begin":608,"end":613},"obj":"NNS"},{"id":"T14899","span":{"begin":597,"end":602},"obj":"DT"},{"id":"T14898","span":{"begin":594,"end":596},"obj":"IN"},{"id":"T14897","span":{"begin":582,"end":587},"obj":"MD"},{"id":"T14896","span":{"begin":572,"end":581},"obj":"NN"},{"id":"T14895","span":{"begin":567,"end":571},"obj":"NN"},{"id":"T14894","span":{"begin":556,"end":566},"obj":"VBG"},{"id":"T14893","span":{"begin":552,"end":555},"obj":"IN"},{"id":"T14892","span":{"begin":541,"end":551},"obj":"NNS"},{"id":"T14891","span":{"begin":528,"end":529},"obj":"HYPH"},{"id":"T14890","span":{"begin":529,"end":540},"obj":"JJ"},{"id":"T14889","span":{"begin":521,"end":528},"obj":"NN"},{"id":"T14888","span":{"begin":519,"end":521},"obj":","},{"id":"T14887","span":{"begin":588,"end":593},"obj":"VB"},{"id":"T14886","span":{"begin":508,"end":519},"obj":"RB"}],"relations":[{"id":"R4185","pred":"nsubjpass","subj":"T14794","obj":"T14795"},{"id":"R4190","pred":"aux","subj":"T14796","obj":"T14795"},{"id":"R4195","pred":"advmod","subj":"T14797","obj":"T14795"},{"id":"R4201","pred":"auxpass","subj":"T14798","obj":"T14795"},{"id":"R4205","pred":"mark","subj":"T14799","obj":"T14800"},{"id":"R4207","pred":"ccomp","subj":"T14800","obj":"T14795"},{"id":"R4211","pred":"nmod","subj":"T14801","obj":"T14802"},{"id":"R4215","pred":"nsubjpass","subj":"T14802","obj":"T14800"},{"id":"R4218","pred":"punct","subj":"T14803","obj":"T14801"},{"id":"R4222","pred":"punct","subj":"T14804","obj":"T14801"},{"id":"R4229","pred":"punct","subj":"T14805","obj":"T14801"},{"id":"R4233","pred":"nmod","subj":"T14806","obj":"T14802"},{"id":"R4235","pred":"cc","subj":"T14807","obj":"T14806"},{"id":"R4237","pred":"conj","subj":"T14808","obj":"T14806"},{"id":"R4238","pred":"prep","subj":"T14809","obj":"T14802"},{"id":"R4239","pred":"det","subj":"T14810","obj":"T14811"},{"id":"R4240","pred":"pobj","subj":"T14811","obj":"T14809"},{"id":"R4241","pred":"amod","subj":"T14812","obj":"T14811"},{"id":"R4242","pred":"punct","subj":"T14888","obj":"T14887"},{"id":"R4243","pred":"amod","subj":"T14813","obj":"T14811"},{"id":"R4244","pred":"npadvmod","subj":"T14889","obj":"T14890"},{"id":"R4245","pred":"aux","subj":"T14814","obj":"T14800"},{"id":"R4246","pred":"amod","subj":"T14890","obj":"T14892"},{"id":"R4247","pred":"punct","subj":"T14891","obj":"T14890"},{"id":"R4248","pred":"nsubj","subj":"T14892","obj":"T14887"},{"id":"R4249","pred":"auxpass","subj":"T14815","obj":"T14800"},{"id":"R4250","pred":"prep","subj":"T14893","obj":"T14892"},{"id":"R4251","pred":"pcomp","subj":"T14894","obj":"T14893"},{"id":"R4252","pred":"prep","subj":"T14816","obj":"T14800"},{"id":"R4253","pred":"compound","subj":"T14895","obj":"T14896"},{"id":"R4254","pred":"dobj","subj":"T14896","obj":"T14894"},{"id":"R4255","pred":"pobj","subj":"T14817","obj":"T14816"},{"id":"R4256","pred":"aux","subj":"T14897","obj":"T14887"},{"id":"R4257","pred":"prep","subj":"T14898","obj":"T14887"},{"id":"R4258","pred":"det","subj":"T14899","obj":"T14900"},{"id":"R4259","pred":"prep","subj":"T14818","obj":"T14800"},{"id":"R4260","pred":"pobj","subj":"T14900","obj":"T14898"},{"id":"R4261","pred":"compound","subj":"T14901","obj":"T14900"},{"id":"R4262","pred":"det","subj":"T14819","obj":"T14820"},{"id":"R4263","pred":"dep","subj":"T14902","obj":"T14903"},{"id":"R4264","pred":"ccomp","subj":"T14903","obj":"T14887"},{"id":"R4265","pred":"acomp","subj":"T14904","obj":"T14903"},{"id":"R4266","pred":"pobj","subj":"T14820","obj":"T14818"},{"id":"R4267","pred":"prep","subj":"T14905","obj":"T14903"},{"id":"R4268","pred":"amod","subj":"T14906","obj":"T14907"},{"id":"R4269","pred":"amod","subj":"T14821","obj":"T14820"},{"id":"R4270","pred":"pobj","subj":"T14907","obj":"T14905"},{"id":"R4271","pred":"amod","subj":"T14908","obj":"T14907"},{"id":"R4272","pred":"punct","subj":"T14909","obj":"T14887"},{"id":"R4273","pred":"prep","subj":"T14822","obj":"T14820"},{"id":"R4276","pred":"compound","subj":"T14823","obj":"T14824"},{"id":"R4281","pred":"pobj","subj":"T14824","obj":"T14822"},{"id":"R4285","pred":"punct","subj":"T14825","obj":"T14800"},{"id":"R4289","pred":"mark","subj":"T14826","obj":"T14827"},{"id":"R4292","pred":"advcl","subj":"T14827","obj":"T14800"},{"id":"R4296","pred":"prep","subj":"T14828","obj":"T14827"},{"id":"R4299","pred":"compound","subj":"T14829","obj":"T14830"},{"id":"R4303","pred":"pobj","subj":"T14830","obj":"T14828"},{"id":"R4306","pred":"cc","subj":"T14831","obj":"T14828"},{"id":"R4310","pred":"conj","subj":"T14832","obj":"T14828"},{"id":"R4313","pred":"det","subj":"T14833","obj":"T14834"},{"id":"R4317","pred":"pobj","subj":"T14834","obj":"T14832"},{"id":"R4321","pred":"prep","subj":"T14835","obj":"T14834"},{"id":"R4324","pred":"amod","subj":"T14836","obj":"T14837"},{"id":"R4328","pred":"pobj","subj":"T14837","obj":"T14835"},{"id":"R4333","pred":"compound","subj":"T14838","obj":"T14837"},{"id":"R4336","pred":"compound","subj":"T14839","obj":"T14837"},{"id":"R4339","pred":"punct","subj":"T14840","obj":"T14795"},{"id":"R4342","pred":"nsubj","subj":"T14842","obj":"T14843"},{"id":"R4343","pred":"acomp","subj":"T14844","obj":"T14843"},{"id":"R4347","pred":"punct","subj":"T14845","obj":"T14843"},{"id":"R4351","pred":"mark","subj":"T14846","obj":"T14847"},{"id":"R4354","pred":"advcl","subj":"T14847","obj":"T14843"},{"id":"R4357","pred":"advmod","subj":"T14848","obj":"T14847"},{"id":"R4361","pred":"punct","subj":"T14849","obj":"T14843"},{"id":"R4365","pred":"mark","subj":"T14850","obj":"T14851"},{"id":"R4368","pred":"ccomp","subj":"T14851","obj":"T14843"},{"id":"R4372","pred":"det","subj":"T14852","obj":"T14853"},{"id":"R4376","pred":"nsubjpass","subj":"T14853","obj":"T14851"},{"id":"R4380","pred":"compound","subj":"T14854","obj":"T14853"},{"id":"R4384","pred":"prep","subj":"T14855","obj":"T14853"},{"id":"R4385","pred":"compound","subj":"T14856","obj":"T14857"},{"id":"R4389","pred":"pobj","subj":"T14857","obj":"T14855"},{"id":"R4392","pred":"punct","subj":"T14858","obj":"T14853"},{"id":"R4394","pred":"prep","subj":"T14859","obj":"T14853"},{"id":"R4397","pred":"pobj","subj":"T14860","obj":"T14859"},{"id":"R4401","pred":"amod","subj":"T14861","obj":"T14860"},{"id":"R4405","pred":"prep","subj":"T14862","obj":"T14861"},{"id":"R4408","pred":"det","subj":"T14863","obj":"T14864"},{"id":"R4412","pred":"pobj","subj":"T14864","obj":"T14862"},{"id":"R4415","pred":"punct","subj":"T14865","obj":"T14851"},{"id":"R4417","pred":"auxpass","subj":"T14866","obj":"T14851"},{"id":"R4420","pred":"prep","subj":"T14867","obj":"T14851"},{"id":"R4423","pred":"det","subj":"T14868","obj":"T14869"},{"id":"R4427","pred":"pobj","subj":"T14869","obj":"T14867"},{"id":"R4431","pred":"compound","subj":"T14870","obj":"T14869"},{"id":"R4437","pred":"compound","subj":"T14871","obj":"T14869"},{"id":"R4441","pred":"punct","subj":"T14872","obj":"T14843"},{"id":"R4445","pred":"cc","subj":"T14873","obj":"T14843"},{"id":"R4449","pred":"nsubj","subj":"T14874","obj":"T14875"},{"id":"R4452","pred":"conj","subj":"T14875","obj":"T14843"},{"id":"R4456","pred":"acomp","subj":"T14876","obj":"T14875"},{"id":"R4458","pred":"prep","subj":"T14877","obj":"T14876"},{"id":"R4460","pred":"pcomp","subj":"T14878","obj":"T14877"},{"id":"R4463","pred":"det","subj":"T14879","obj":"T14880"},{"id":"R4467","pred":"dobj","subj":"T14880","obj":"T14878"},{"id":"R4470","pred":"prep","subj":"T14881","obj":"T14880"},{"id":"R4472","pred":"det","subj":"T14882","obj":"T14883"},{"id":"R4475","pred":"pobj","subj":"T14883","obj":"T14881"},{"id":"R4479","pred":"punct","subj":"T14884","obj":"T14875"},{"id":"R4482","pred":"advmod","subj":"T14886","obj":"T14887"}],"text":"It should also be stressed that Capn4-/- ES and MEF cells from the presumptive hypomorphic allele can be maintained in culture despite an apparent lack of calpain activity, as assessed by casein zymography or by the appearance of characteristic spectrin breakdown products. It is conceivable, as discussed earlier, that a trace amount of calpain activity, beneath levels detectable by these methods, is retained from this mutant Capn4 allele, and it is sufficient for maintaining the viability of the cells. Furthermore, calpain-independent mechanisms for protecting cell viability might exist in these cell lines that are absent in early embryonic cells."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T12385","span":{"begin":633,"end":654},"obj":"CL:0000007"},{"id":"T12384","span":{"begin":633,"end":648},"obj":"UBERON:0019248"},{"id":"T12383","span":{"begin":435,"end":441},"obj":"SO:0001023"},{"id":"T12382","span":{"begin":429,"end":434},"obj":"PR:000005022"},{"id":"T12381","span":{"begin":91,"end":97},"obj":"SO:0001023"},{"id":"T12380","span":{"begin":52,"end":57},"obj":"CL:0002322"},{"id":"T12379","span":{"begin":41,"end":43},"obj":"_FRAGMENT"},{"id":"T12378","span":{"begin":32,"end":37},"obj":"PR:000005022"}],"relations":[{"id":"R2364","pred":"_lexicallyChainedTo","subj":"T12380","obj":"T12379"}],"text":"It should also be stressed that Capn4-/- ES and MEF cells from the presumptive hypomorphic allele can be maintained in culture despite an apparent lack of calpain activity, as assessed by casein zymography or by the appearance of characteristic spectrin breakdown products. It is conceivable, as discussed earlier, that a trace amount of calpain activity, beneath levels detectable by these methods, is retained from this mutant Capn4 allele, and it is sufficient for maintaining the viability of the cells. Furthermore, calpain-independent mechanisms for protecting cell viability might exist in these cell lines that are absent in early embryonic cells."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T12767","span":{"begin":649,"end":654},"obj":"CL_GO_EXT:cell"},{"id":"T12766","span":{"begin":633,"end":654},"obj":"CL:0000007"},{"id":"T12765","span":{"begin":633,"end":648},"obj":"UBERON:0019248"},{"id":"T12764","span":{"begin":603,"end":607},"obj":"CL_GO_EXT:cell"},{"id":"T12763","span":{"begin":567,"end":571},"obj":"CL_GO_EXT:cell"},{"id":"T12762","span":{"begin":501,"end":506},"obj":"CL_GO_EXT:cell"},{"id":"T12761","span":{"begin":435,"end":441},"obj":"SO_EXT:0001023"},{"id":"T12760","span":{"begin":429,"end":434},"obj":"PR_EXT:000005022"},{"id":"T12759","span":{"begin":422,"end":428},"obj":"SO_EXT:sequence_altered_entity_or_alteration_process"},{"id":"T12758","span":{"begin":245,"end":253},"obj":"GO_PR_EXT:spectrin"},{"id":"T12757","span":{"begin":91,"end":97},"obj":"SO_EXT:0001023"},{"id":"T12756","span":{"begin":52,"end":57},"obj":"CL_GO_EXT:cell"},{"id":"T12755","span":{"begin":52,"end":57},"obj":"CL:0002322"},{"id":"T12754","span":{"begin":41,"end":43},"obj":"_FRAGMENT"},{"id":"T12753","span":{"begin":39,"end":40},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T12752","span":{"begin":37,"end":38},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T12751","span":{"begin":32,"end":37},"obj":"PR_EXT:000005022"}],"relations":[{"id":"R2368","pred":"_lexicallyChainedTo","subj":"T12755","obj":"T12754"}],"text":"It should also be stressed that Capn4-/- ES and MEF cells from the presumptive hypomorphic allele can be maintained in culture despite an apparent lack of calpain activity, as assessed by casein zymography or by the appearance of characteristic spectrin breakdown products. It is conceivable, as discussed earlier, that a trace amount of calpain activity, beneath levels detectable by these methods, is retained from this mutant Capn4 allele, and it is sufficient for maintaining the viability of the cells. Furthermore, calpain-independent mechanisms for protecting cell viability might exist in these cell lines that are absent in early embryonic cells."}