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PMC:1382200 / 15828-16444 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7801 385-394 NN denotes inability
T7800 381-384 DT denotes The
T7799 380-616 sentence denotes The inability to isolate Capn2-/- ES cells, in concert with the absence of Capn2-/- embryos beyond the 8-cell stage, suggested that m-calpain activity might be essential for cell viability or the establishment of viable ES cell clones.
T7798 379-380 . denotes .
T7797 362-363 HYPH denotes -
T7796 363-372 JJ denotes resistant
T7795 358-362 NN denotes drug
T7794 373-379 NNS denotes clones
T7793 354-357 CD denotes 126
T7792 351-353 IN denotes of
T7791 343-350 NNS denotes screens
T7790 340-342 IN denotes in
T7789 326-330 VBD denotes were
T7788 317-319 NN denotes ES
T7787 315-316 SYM denotes -
T7786 314-315 HYPH denotes /
T7785 313-314 SYM denotes -
T7784 308-313 NN denotes Capn2
T7783 320-325 NNS denotes cells
T7782 305-307 DT denotes no
T7781 303-305 , denotes ,
T7780 296-303 RB denotes however
T7779 294-296 , denotes ,
T7778 290-294 NN denotes case
T7777 285-289 DT denotes this
T7776 331-339 VBN denotes isolated
T7775 282-284 IN denotes In
T7774 281-380 sentence denotes In this case, however, no Capn2-/- ES cells were isolated in screens of 126 drug-resistant clones.
T7773 280-281 . denotes .
T7772 279-280 -RRB- denotes ]
T7771 277-279 CD denotes 31
T7770 276-277 -LRB- denotes [
T7769 267-269 NN denotes ES
T7768 265-266 SYM denotes -
T7767 264-265 HYPH denotes /
T7766 263-264 SYM denotes +
T7765 270-275 NNS denotes cells
T7764 258-263 NN denotes Capn4
T7763 255-257 IN denotes of
T7762 250-254 NN denotes case
T7761 246-249 DT denotes the
T7760 243-245 IN denotes in
T7759 226-233 RB denotes readily
T7758 234-242 VBN denotes achieved
T7757 222-225 VBD denotes was
T7756 218-221 CC denotes and
T7755 209-211 NN denotes ES
T7754 212-217 NNS denotes cells
T7753 200-208 VBN denotes targeted
T7752 197-199 IN denotes to
T7751 177-188 RB denotes extensively
T7750 172-176 VBN denotes been
T7749 168-171 VBZ denotes has
T7748 189-196 VBN denotes applied
T7747 158-167 NN denotes procedure
T7746 153-157 DT denotes This
T7745 152-281 sentence denotes This procedure has been extensively applied to targeted ES cells and was readily achieved in the case of Capn4+/- ES cells [31].
T7744 151-152 . denotes .
T7743 141-151 NN denotes conversion
T7742 136-140 NN denotes gene
T7741 133-135 IN denotes by
T7740 120-126 NN denotes mutant
T7739 127-132 NNS denotes cells
T7738 109-119 JJ denotes homozygous
T7737 100-108 VB denotes generate
T7736 97-99 TO denotes to
T7735 88-96 NNS denotes attempts
T7734 85-87 IN denotes in
T7733 77-79 NN denotes mL
T7732 76-77 SYM denotes /
T7731 80-84 NN denotes G418
T7730 74-76 NN denotes mg
T7729 72-73 CD denotes 2
T7728 69-71 IN denotes of
T7727 60-68 NN denotes presence
T7726 56-59 DT denotes the
T7725 53-55 IN denotes in
T7724 43-52 NN denotes selection
T7723 36-42 JJ denotes clonal
T7722 33-35 IN denotes to
T7721 18-22 VBD denotes were
T7720 23-32 VBN denotes subjected
T7719 9-11 NN denotes ES
T7718 7-8 SYM denotes -
T7717 6-7 HYPH denotes /
T7716 5-6 SYM denotes +
T7715 12-17 NNS denotes cells
T7714 0-5 NN denotes Capn2
T7849 615-616 . denotes .
T7848 604-608 NN denotes cell
T7847 601-603 NN denotes ES
T7846 609-615 NNS denotes clones
T7845 594-600 JJ denotes viable
T7844 591-593 IN denotes of
T7843 577-590 NN denotes establishment
T7842 573-576 DT denotes the
T7841 570-572 CC denotes or
T7840 560-569 NN denotes viability
T7839 555-559 NN denotes cell
T7838 551-554 IN denotes for
T7837 541-550 JJ denotes essential
T7836 532-537 MD denotes might
T7835 523-531 NN denotes activity
T7834 514-515 HYPH denotes -
T7833 515-522 NN denotes calpain
T7832 513-514 NN denotes m
T7831 538-540 VB denotes be
T7830 508-512 IN denotes that
T7829 496-498 , denotes ,
T7828 485-486 HYPH denotes -
T7827 486-490 NN denotes cell
T7826 484-485 CD denotes 8
T7825 491-496 NN denotes stage
T7824 480-483 DT denotes the
T7823 473-479 IN denotes beyond
T7822 463-464 SYM denotes -
T7821 462-463 HYPH denotes /
T7820 461-462 SYM denotes -
T7819 465-472 NNS denotes embryos
T7818 456-461 NN denotes Capn2
T7817 453-455 IN denotes of
T7816 445-452 NN denotes absence
T7815 441-444 DT denotes the
T7814 436-440 IN denotes with
T7813 428-435 NN denotes concert
T7812 425-427 IN denotes in
T7811 423-425 , denotes ,
T7810 415-417 NN denotes ES
T7809 413-414 SYM denotes -
T7808 412-413 HYPH denotes /
T7807 411-412 SYM denotes -
T7806 418-423 NNS denotes cells
T7805 406-411 NN denotes Capn2
T7804 398-405 VB denotes isolate
T7803 395-397 TO denotes to
T7802 498-507 VBD denotes suggested
R2229 T7714 T7715 nmod Capn2,cells
R2230 T7715 T7720 nsubjpass cells,subjected
R2231 T7716 T7714 punct +,Capn2
R2232 T7717 T7714 punct /,Capn2
R2233 T7718 T7714 punct -,Capn2
R2234 T7719 T7715 compound ES,cells
R2235 T7721 T7720 auxpass were,subjected
R2236 T7722 T7720 prep to,subjected
R2237 T7723 T7724 amod clonal,selection
R2238 T7724 T7722 pobj selection,to
R2239 T7725 T7720 prep in,subjected
R2240 T7726 T7727 det the,presence
R2241 T7727 T7725 pobj presence,in
R2242 T7728 T7727 prep of,presence
R2243 T7729 T7730 nummod 2,mg
R2244 T7730 T7731 nmod mg,G418
R2245 T7731 T7728 pobj G418,of
R2246 T7732 T7733 punct /,mL
R2247 T7733 T7730 prep mL,mg
R2248 T7734 T7727 prep in,presence
R2249 T7735 T7734 pobj attempts,in
R2250 T7736 T7737 aux to,generate
R2251 T7737 T7735 acl generate,attempts
R2252 T7738 T7739 amod homozygous,cells
R2253 T7739 T7737 dobj cells,generate
R2254 T7740 T7739 compound mutant,cells
R2255 T7741 T7737 prep by,generate
R2256 T7742 T7743 compound gene,conversion
R2257 T7743 T7741 pobj conversion,by
R2258 T7744 T7720 punct .,subjected
R2259 T7746 T7747 det This,procedure
R2260 T7747 T7748 nsubjpass procedure,applied
R2261 T7749 T7748 aux has,applied
R2262 T7750 T7748 auxpass been,applied
R2263 T7751 T7748 advmod extensively,applied
R2264 T7752 T7748 prep to,applied
R2265 T7753 T7754 amod targeted,cells
R2266 T7754 T7752 pobj cells,to
R2267 T7755 T7754 compound ES,cells
R2268 T7756 T7748 cc and,applied
R2269 T7757 T7758 auxpass was,achieved
R2270 T7758 T7748 conj achieved,applied
R2271 T7759 T7758 advmod readily,achieved
R2272 T7760 T7758 prep in,achieved
R2273 T7761 T7762 det the,case
R2274 T7762 T7760 pobj case,in
R2275 T7763 T7762 prep of,case
R2276 T7764 T7765 nmod Capn4,cells
R2277 T7765 T7763 pobj cells,of
R2278 T7766 T7764 punct +,Capn4
R2279 T7767 T7764 punct /,Capn4
R2280 T7768 T7764 punct -,Capn4
R2281 T7769 T7765 compound ES,cells
R2282 T7770 T7771 punct [,31
R2283 T7771 T7758 parataxis 31,achieved
R2284 T7772 T7771 punct ],31
R2285 T7773 T7748 punct .,applied
R2286 T7775 T7776 prep In,isolated
R2287 T7777 T7778 det this,case
R2288 T7778 T7775 pobj case,In
R2289 T7779 T7776 punct ", ",isolated
R2290 T7780 T7776 advmod however,isolated
R2291 T7781 T7776 punct ", ",isolated
R2292 T7782 T7783 det no,cells
R2293 T7783 T7776 nsubjpass cells,isolated
R2294 T7784 T7783 nmod Capn2,cells
R2295 T7785 T7784 punct -,Capn2
R2296 T7786 T7784 punct /,Capn2
R2297 T7787 T7784 punct -,Capn2
R2298 T7788 T7783 compound ES,cells
R2299 T7789 T7776 auxpass were,isolated
R2300 T7790 T7776 prep in,isolated
R2301 T7791 T7790 pobj screens,in
R2302 T7792 T7791 prep of,screens
R2303 T7793 T7794 nummod 126,clones
R2304 T7794 T7792 pobj clones,of
R2305 T7795 T7796 npadvmod drug,resistant
R2306 T7796 T7794 amod resistant,clones
R2307 T7797 T7796 punct -,resistant
R2308 T7798 T7776 punct .,isolated
R2309 T7800 T7801 det The,inability
R2310 T7801 T7802 nsubj inability,suggested
R2311 T7803 T7804 aux to,isolate
R2312 T7804 T7801 acl isolate,inability
R2313 T7805 T7806 nmod Capn2,cells
R2314 T7806 T7804 dobj cells,isolate
R2315 T7807 T7805 punct -,Capn2
R2316 T7808 T7805 punct /,Capn2
R2317 T7809 T7805 punct -,Capn2
R2318 T7810 T7806 compound ES,cells
R2319 T7811 T7804 punct ", ",isolate
R2320 T7812 T7804 prep in,isolate
R2321 T7813 T7812 pobj concert,in
R2322 T7814 T7813 prep with,concert
R2323 T7815 T7816 det the,absence
R2324 T7816 T7814 pobj absence,with
R2325 T7817 T7816 prep of,absence
R2326 T7818 T7819 nmod Capn2,embryos
R2327 T7819 T7817 pobj embryos,of
R2328 T7820 T7818 punct -,Capn2
R2329 T7821 T7818 punct /,Capn2
R2330 T7822 T7818 punct -,Capn2
R2331 T7823 T7816 prep beyond,absence
R2332 T7824 T7825 det the,stage
R2333 T7825 T7823 pobj stage,beyond
R2334 T7826 T7827 nummod 8,cell
R2335 T7827 T7825 compound cell,stage
R2336 T7828 T7827 punct -,cell
R2337 T7829 T7802 punct ", ",suggested
R2338 T7830 T7831 mark that,be
R2339 T7831 T7802 ccomp be,suggested
R2340 T7832 T7833 compound m,calpain
R2341 T7833 T7835 compound calpain,activity
R2342 T7834 T7833 punct -,calpain
R2343 T7835 T7831 nsubj activity,be
R2344 T7836 T7831 aux might,be
R2345 T7837 T7831 acomp essential,be
R2346 T7838 T7837 prep for,essential
R2347 T7839 T7840 compound cell,viability
R2348 T7840 T7838 pobj viability,for
R2349 T7841 T7840 cc or,viability
R2350 T7842 T7843 det the,establishment
R2351 T7843 T7840 conj establishment,viability
R2352 T7844 T7843 prep of,establishment
R2353 T7845 T7846 amod viable,clones
R2354 T7846 T7844 pobj clones,of
R2355 T7847 T7846 compound ES,clones
R2356 T7848 T7846 compound cell,clones
R2357 T7849 T7802 punct .,suggested

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7655 601-608 CL:0002322 denotes ES cell
T7654 484-496 UBERON:0019252 denotes 8-cell stage
T7653 465-472 UBERON:0000922 denotes embryos
T7652 456-461 PR:000005015 denotes Capn2
T7651 415-423 CL:0002322 denotes ES cells
T7650 406-411 PR:000005015 denotes Capn2
T7649 358-362 CHEBI:23888 denotes drug
T7648 317-325 CL:0002322 denotes ES cells
T7647 308-313 PR:000005015 denotes Capn2
T7646 267-275 CL:0002322 denotes ES cells
T7645 258-263 PR:000005022 denotes Capn4
T7644 209-217 CL:0002322 denotes ES cells
T7643 136-151 GO:0035822 denotes gene conversion
T7642 136-140 SO:0000704 denotes gene
T7641 80-84 CHEBI:42768 denotes G418
T7640 9-17 CL:0002322 denotes ES cells
T7639 0-5 PR:000005015 denotes Capn2

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7703 609-615 SO_EXT:sequence_cloned_entity denotes clones
T7702 604-608 CL_GO_EXT:cell denotes cell
T7701 601-608 CL:0002322 denotes ES cell
T7700 555-559 CL_GO_EXT:cell denotes cell
T7699 513-522 GO_PR_EXT:calpain_2_complex denotes m-calpain
T7698 486-490 CL_GO_EXT:cell denotes cell
T7697 484-496 UBERON:0019252 denotes 8-cell stage
T7696 465-472 UBERON:0000922 denotes embryos
T7695 463-464 SO_EXT:sequence_nullness_or_absence denotes -
T7694 461-462 SO_EXT:sequence_nullness_or_absence denotes -
T7693 456-461 PR_EXT:000005015 denotes Capn2
T7692 418-423 CL_GO_EXT:cell denotes cells
T7691 415-423 CL:0002322 denotes ES cells
T7690 413-414 SO_EXT:sequence_nullness_or_absence denotes -
T7689 411-412 SO_EXT:sequence_nullness_or_absence denotes -
T7688 406-411 PR_EXT:000005015 denotes Capn2
T7687 373-379 SO_EXT:sequence_cloned_entity denotes clones
T7686 358-362 CHEBI_EXT:23888 denotes drug
T7685 320-325 CL_GO_EXT:cell denotes cells
T7684 317-325 CL:0002322 denotes ES cells
T7683 315-316 SO_EXT:sequence_nullness_or_absence denotes -
T7682 313-314 SO_EXT:sequence_nullness_or_absence denotes -
T7681 308-313 PR_EXT:000005015 denotes Capn2
T7680 270-275 CL_GO_EXT:cell denotes cells
T7679 267-275 CL:0002322 denotes ES cells
T7678 265-266 SO_EXT:sequence_nullness_or_absence denotes -
T7677 263-264 SO_EXT:normal_or_wild_type_or_present denotes +
T7676 258-263 PR_EXT:000005022 denotes Capn4
T7675 212-217 CL_GO_EXT:cell denotes cells
T7674 209-217 CL:0002322 denotes ES cells
T7673 136-151 GO:0035822 denotes gene conversion
T7672 136-140 SO_EXT:0000704 denotes gene
T7671 127-132 CL_GO_EXT:cell denotes cells
T7670 120-126 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T7669 80-84 CHEBI:42768 denotes G418
T7668 36-42 SO_EXT:sequence_cloned_entity denotes clonal
T7667 12-17 CL_GO_EXT:cell denotes cells
T7666 9-17 CL:0002322 denotes ES cells
T7665 7-8 SO_EXT:sequence_nullness_or_absence denotes -
T7664 5-6 SO_EXT:normal_or_wild_type_or_present denotes +
T7663 0-5 PR_EXT:000005015 denotes Capn2