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PMC:1359074 / 851-1184 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T434 327-333 NN denotes globin
T433 324-326 JJ denotes ɛy
T429 298-306 VB denotes required
T428 295-297 VB denotes is
T427 290-294 NN denotes Sox6
T426 285-289 IN denotes that
T425 279-284 VB denotes shows
T424 273-278 NN denotes study
T423 265-272 JJ denotes present
T422 261-264 DT denotes The
T421 245-259 NN denotes erythropoiesis
T420 234-244 JJ denotes definitive
T419 231-233 IN denotes in
T418 221-230 NN denotes functions
T417 216-220 NN denotes Sox6
T416 211-215 IN denotes that
T415 199-210 VB denotes demonstrate
T414 193-198 NN denotes liver
T413 187-192 JJ denotes fetal
T412 176-186 JJ denotes homozygous
T411 170-175 NN denotes p100H
T410 167-169 IN denotes in
T409 164-166 NN denotes ɛy
T408 161-163 IN denotes of
T407 150-160 NN denotes expression
T406 142-149 JJ denotes ectopic
T405 138-141 DT denotes the
T404 134-137 CC denotes and
T403 128-133 NN denotes liver
T402 122-127 JJ denotes fetal
T401 112-121 JJ denotes wild-type
T400 109-111 IN denotes in
T399 104-108 NN denotes Sox6
T398 101-103 IN denotes of
T397 90-100 NN denotes expression
T396 83-89 JJ denotes normal
T395 79-82 DT denotes The
T394 69-77 NN denotes promoter
T393 66-68 JJ denotes ɛy
T392 62-65 DT denotes the
T391 59-61 TO denotes to
T390 51-58 VB denotes binding
T389 42-50 RB denotes directly
T388 39-41 IN denotes by
T387 29-38 NN denotes repressor
T386 27-28 DT denotes a
T385 24-26 IN denotes as
T384 19-23 VB denotes acts
T383 14-18 NN denotes Sox6
T382 9-13 IN denotes that
T431 311-320 NN denotes silencing
T430 307-310 IN denotes for
T432 321-323 IN denotes of
R174 T383 T384 arg1Of Sox6,acts
R176 T384 T382 arg1Of acts,that
R177 T384 T385 arg1Of acts,as
R178 T384 T388 arg1Of acts,by
R179 T387 T385 arg2Of repressor,as
R180 T387 T386 arg1Of repressor,a
R181 T390 T388 arg2Of binding,by
R182 T390 T389 arg1Of binding,directly
R183 T390 T391 arg1Of binding,to
R184 T394 T391 arg2Of promoter,to
R185 T394 T392 arg1Of promoter,the
R186 T394 T393 arg1Of promoter,ɛy
R187 T397 T395 arg1Of expression,The
R188 T397 T396 arg1Of expression,normal
R189 T397 T398 arg1Of expression,of
R190 T397 T400 arg1Of expression,in
R191 T397 T404 arg1Of expression,and
R192 T399 T398 arg2Of Sox6,of
R193 T403 T400 arg2Of liver,in
R194 T403 T401 arg1Of liver,wild-type
R195 T403 T402 arg1Of liver,fetal
R196 T404 T415 arg1Of and,demonstrate
R197 T407 T404 arg2Of expression,and
R198 T407 T405 arg1Of expression,the
R199 T407 T406 arg1Of expression,ectopic
R200 T407 T408 arg1Of expression,of
R201 T407 T410 arg1Of expression,in
R202 T409 T408 arg2Of ɛy,of
R203 T414 T410 arg2Of liver,in
R204 T414 T411 arg1Of liver,p100H
R205 T414 T412 arg1Of liver,homozygous
R206 T414 T413 arg1Of liver,fetal
R207 T415 T419 arg1Of demonstrate,in
R208 T418 T415 arg2Of functions,demonstrate
R209 T418 T416 arg1Of functions,that
R210 T418 T417 arg1Of functions,Sox6
R211 T421 T419 arg2Of erythropoiesis,in
R212 T421 T420 arg1Of erythropoiesis,definitive
R213 T424 T422 arg1Of study,The
R214 T424 T423 arg1Of study,present
R215 T424 T425 arg1Of study,shows
R216 T427 T428 arg1Of Sox6,is
R217 T427 T429 arg2Of Sox6,required
R219 T429 T428 arg2Of required,is
R220 T429 T430 arg1Of required,for
R222 T431 T430 arg2Of silencing,for
R223 T431 T432 arg1Of silencing,of
R225 T434 T432 arg2Of globin,of
R226 T434 T433 arg1Of globin,ɛy

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T155 14-18 Protein denotes Sox6
T156 66-68 Protein denotes ɛy
T157 104-108 Protein denotes Sox6
T158 164-166 Protein denotes ɛy
T159 216-220 Protein denotes Sox6
T160 290-294 Protein denotes Sox6
T161 324-333 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T478 14-18 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T479 104-108 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T480 216-220 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T481 290-294 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T90 128-133 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T91 193-198 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T108 245-259 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T105 234-259 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T102 327-333 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T167 327-333 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T172 51-58 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T97 79-260 Sentence denotes The normal expression of Sox6 in wild-type fetal liver and the ectopic expression of ɛy in p100H homozygous fetal liver demonstrate that Sox6 functions in definitive erythropoiesis.
T9 79-260 Sentence denotes The normal expression of Sox6 in wild-type fetal liver and the ectopic expression of ɛy in p100H homozygous fetal liver demonstrate that Sox6 functions in definitive erythropoiesis.

simple1

Id Subject Object Predicate Lexical cue
T246 324-333 Protein denotes ɛy globin
T245 290-294 Protein denotes Sox6
T244 216-220 Protein denotes Sox6
T243 164-166 Protein denotes ɛy
T242 104-108 Protein denotes Sox6
T241 66-68 Protein denotes ɛy
T240 14-18 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T885 14-18 Protein denotes Sox6
T886 66-68 Protein denotes ɛy
T887 104-108 Protein denotes Sox6
T888 164-166 Protein denotes ɛy
T889 216-220 Protein denotes Sox6
T890 290-294 Protein denotes Sox6
T891 324-333 Protein denotes ɛy globin
T899 51-58 Binding denotes binding
T900 150-160 Gene_expression denotes expression
T901 90-100 Gene_expression denotes expression
T902 298-306 Positive_regulation denotes required
T903 311-320 Negative_regulation denotes silencing
R589 T885 T899 themeOf Sox6,binding
R591 T887 T901 themeOf Sox6,expression
R592 T888 T900 themeOf ɛy,expression
R593 T891 T903 themeOf ɛy globin,silencing
R596 T903 T902 themeOf silencing,required
R590 T886 T899 themeOf ɛy,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T493 14-18 Protein denotes Sox6
T494 66-68 Protein denotes ɛy
T495 104-108 Protein denotes Sox6
T496 164-166 Protein denotes ɛy
T497 216-220 Protein denotes Sox6
T498 290-294 Protein denotes Sox6
T499 324-333 Protein denotes ɛy globin
T509 51-58 Binding denotes binding
T510 150-160 Gene_expression denotes expression
T511 90-100 Gene_expression denotes expression
T512 311-320 Negative_regulation denotes silencing
T513 298-306 Positive_regulation denotes required
R450 T493 T509 themeOf Sox6,binding
R451 T494 T509 themeOf ɛy,binding
R452 T495 T511 themeOf Sox6,expression
R453 T496 T510 themeOf ɛy,expression
R454 T498 T513 causeOf Sox6,required
R455 T499 T512 themeOf ɛy globin,silencing
R460 T512 T513 themeOf silencing,required

DLUT931

Id Subject Object Predicate Lexical cue
T543 298-306 Positive_regulation denotes required
T542 311-320 Negative_regulation denotes silencing
T541 142-149 Negative_regulation denotes ectopic
T540 150-160 Gene_expression denotes expression
T539 90-100 Gene_expression denotes expression
T524 14-18 Protein denotes Sox6
T525 66-68 Protein denotes ɛy
T526 104-108 Protein denotes Sox6
T527 164-166 Protein denotes ɛy
T528 216-220 Protein denotes Sox6
T529 290-294 Protein denotes Sox6
T530 324-333 Protein denotes ɛy globin
T538 51-58 Binding denotes binding
R265 T540 T541 themeOf expression,ectopic
R266 T542 T543 themeOf silencing,required
R465 T524 T538 themeOf Sox6,binding
R466 T525 T538 themeOf ɛy,binding
R467 T526 T539 themeOf Sox6,expression
R468 T527 T540 themeOf ɛy,expression
R469 T529 T543 causeOf Sox6,required
R470 T530 T542 themeOf ɛy globin,silencing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T872 79-175 Gene_expression denotes The normal expression of Sox6 in wild-type fetal liver and the ectopic expression of ɛy in p100H
T869 138-175 Gene_expression denotes the ectopic expression of ɛy in p100H
T867 42-77 Binding denotes directly binding to the ɛy promoter
T845 216-220 Protein denotes Sox6
T840 59-77 Entity denotes to the ɛy promoter
T842 290-294 Protein denotes Sox6
T849 161-166 Protein denotes of ɛy
T852 101-108 Protein denotes of Sox6
T854 170-175 Entity denotes p100H
T857 321-333 Protein denotes of ɛy globin
T858 66-68 Protein denotes ɛy
T862 14-18 Protein denotes Sox6
R573 T840 T858 partOf to the ɛy promoter,ɛy
R574 T840 T867 themeOf to the ɛy promoter,directly binding to the ɛy promoter
R578 T849 T869 themeOf of ɛy,the ectopic expression of ɛy in p100H
R579 T852 T872 themeOf of Sox6,The normal expression of Sox6 in wild-type fetal liver and the ectopic expression of ɛy in p100H

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T719 59-61 TO denotes to
T718 51-58 JJ denotes binding
T717 42-50 RB denotes directly
T716 39-41 IN denotes by
T715 29-38 NN denotes repressor
T714 27-28 DT denotes a
T713 24-26 IN denotes as
T712 19-23 NNS denotes acts
T711 14-18 JJ denotes Sox6
T710 9-13 IN denotes that
T720 62-65 DT denotes the
T721 66-68 JJ denotes ɛy
T722 69-77 NN denotes promoter
T723 77-78 . denotes .
T724 79-82 DT denotes The
T725 83-89 JJ denotes normal
T726 90-100 NN denotes expression
T727 101-103 IN denotes of
T728 104-108 NNP denotes Sox6
T729 109-111 IN denotes in
T730 112-121 JJ denotes wild-type
T731 122-127 JJ denotes fetal
T732 128-133 NN denotes liver
T733 134-137 CC denotes and
T734 138-141 DT denotes the
T735 142-149 JJ denotes ectopic
T736 150-160 NN denotes expression
T737 161-163 IN denotes of
T738 164-166 NN denotes ɛy
T739 167-169 IN denotes in
T740 170-175 JJ denotes p100H
T741 176-186 JJ denotes homozygous
T742 187-192 JJ denotes fetal
T743 193-198 NN denotes liver
T744 199-210 VBP denotes demonstrate
T745 211-215 IN denotes that
T746 216-220 JJ denotes Sox6
T747 221-230 NNS denotes functions
T748 231-233 IN denotes in
T749 234-244 JJ denotes definitive
T750 245-259 NNS denotes erythropoiesis
T751 259-260 . denotes .
T752 261-264 DT denotes The
T753 265-272 JJ denotes present
T754 273-278 NN denotes study
T755 279-284 VBZ denotes shows
T756 285-289 IN denotes that
T757 290-294 NNP denotes Sox6
T758 295-297 VBZ denotes is
T759 298-306 VBN denotes required
T760 307-310 IN denotes for
T761 311-320 VBG denotes silencing
T762 321-323 IN denotes of
T763 324-326 JJ denotes ɛy
T764 327-333 NN denotes globin
R406 T710 T718 mark that,binding
R407 T711 T712 amod Sox6,acts
R408 T712 T718 nsubj acts,binding
R409 T713 T712 prep as,acts
R410 T714 T715 det a,repressor
R411 T715 T713 pobj repressor,as
R412 T716 T712 prep by,acts
R413 T717 T718 advmod directly,binding
R415 T719 T718 prep to,binding
R488 T720 T722 det the,promoter
R489 T721 T722 amod ɛy,promoter
R490 T722 T719 pobj promoter,to
R492 T724 T726 det The,expression
R493 T725 T726 amod normal,expression
R494 T726 T744 nsubj expression,demonstrate
R495 T727 T726 prep of,expression
R496 T728 T727 pobj Sox6,of
R497 T729 T726 prep in,expression
R498 T730 T732 amod wild-type,liver
R499 T731 T732 amod fetal,liver
R500 T732 T729 pobj liver,in
R501 T733 T732 cc and,liver
R502 T734 T736 det the,expression
R503 T735 T736 amod ectopic,expression
R504 T736 T732 conj expression,liver
R505 T737 T736 prep of,expression
R506 T738 T737 pobj ɛy,of
R507 T739 T738 prep in,ɛy
R508 T740 T743 amod p100H,liver
R509 T741 T743 amod homozygous,liver
R510 T742 T743 amod fetal,liver
R511 T743 T739 pobj liver,in
R512 T744 T744 ROOT demonstrate,demonstrate
R513 T745 T744 dobj that,demonstrate
R514 T746 T747 amod Sox6,functions
R515 T747 T745 conj functions,that
R516 T748 T747 prep in,functions
R517 T749 T750 amod definitive,erythropoiesis
R518 T750 T748 pobj erythropoiesis,in
R519 T751 T744 punct .,demonstrate
R520 T752 T754 det The,study
R521 T753 T754 amod present,study
R522 T754 T755 nsubj study,shows
R523 T755 T755 ROOT shows,shows
R524 T756 T759 mark that,required
R525 T757 T759 nsubjpass Sox6,required
R526 T758 T759 auxpass is,required
R527 T759 T755 ccomp required,shows
R528 T760 T759 prep for,required
R529 T761 T760 pcomp silencing,for
R530 T762 T761 prep of,silencing
R531 T763 T764 amod ɛy,globin
R532 T764 T762 pobj globin,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T227 298-306 Positive_regulation denotes required
T224 327-333 Protein denotes globin
T223 290-294 Protein denotes Sox6
T222 90-100 Gene_expression denotes expression
T221 216-220 Protein denotes Sox6
T220 170-175 Protein denotes p100H
T219 104-108 Protein denotes Sox6
T218 51-58 Binding denotes binding
T217 69-77 Entity denotes promoter
T216 14-18 Protein denotes Sox6
T226 311-320 Negative_regulation denotes silencing
R36 T216 T218 themeOf Sox6,binding
R37 T217 T218 Site promoter,binding
R38 T219 T222 themeOf Sox6,expression
R39 T223 T227 causeOf Sox6,required
R40 T224 T226 themeOf globin,silencing
R445 T226 T227 themeOf silencing,required

testone

Id Subject Object Predicate Lexical cue
T29 14-18 Protein denotes Sox6
T30 66-68 Protein denotes ɛy
T31 104-108 Protein denotes Sox6
T32 164-166 Protein denotes ɛy
T33 216-220 Protein denotes Sox6
T34 290-294 Protein denotes Sox6
T35 324-333 Protein denotes ɛy globin
T42 51-58 Binding denotes binding
T43 69-77 Entity denotes promoter
R7 T43 T30 partOf promoter,ɛy
R8 T43 T42 themeOf promoter,binding
R4 T29 T42 themeOf Sox6,binding

test3

Id Subject Object Predicate Lexical cue
T82 324-333 Protein denotes ɛy globin
T54 14-18 Protein denotes Sox6
T55 66-68 Protein denotes ɛy
T56 104-108 Protein denotes Sox6
T57 164-166 Protein denotes ɛy
T58 216-220 Protein denotes Sox6
T59 290-294 Protein denotes Sox6
T60 324-333 Protein denotes ɛy globin
T75 14-18 Protein denotes Sox6
T76 51-58 Binding denotes binding
T77 66-68 Protein denotes ɛy
T78 104-108 Protein denotes Sox6
T79 164-166 Protein denotes ɛy
T80 216-220 Protein denotes Sox6
T81 290-294 Protein denotes Sox6
R14 T75 T76 themeOf Sox6,binding
R15 T77 T76 themeOf ɛy,binding
R16 T82 T81 themeOf ɛy globin,Sox6