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PMC:1359074 / 756-929 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T394 164-172 NN denotes promoter
T393 161-163 JJ denotes ɛy
T392 157-160 DT denotes the
T391 154-156 TO denotes to
T390 146-153 VB denotes binding
T389 137-145 RB denotes directly
T388 134-136 IN denotes by
T387 124-133 NN denotes repressor
T386 122-123 DT denotes a
T385 119-121 IN denotes as
T384 114-118 VB denotes acts
T383 109-113 NN denotes Sox6
T382 104-108 IN denotes that
T381 92-103 VB denotes demonstrate
T380 85-91 NN denotes assays
T379 83-84 -RRB- denotes )
T378 79-83 NN denotes ChIP
T377 78-79 -LRB- denotes (
T376 58-77 NN denotes immunoprecipitation
T375 48-57 NN denotes chromatin
T374 44-47 CC denotes and
T373 42-43 -RRB- denotes )
T372 38-42 NN denotes EMSA
T371 37-38 -LRB- denotes (
T370 31-36 NN denotes assay
T369 25-30 NN denotes shift
T368 16-24 NN denotes mobility
T367 0-15 JJ denotes Electrophoretic
R160 T370 T367 arg1Of assay,Electrophoretic
R161 T370 T368 arg1Of assay,mobility
R162 T370 T369 arg1Of assay,shift
R163 T370 T371 arg1Of assay,(
R164 T370 T374 arg1Of assay,and
R165 T372 T371 arg2Of EMSA,(
R166 T373 T371 arg3Of ),(
R167 T374 T381 arg1Of and,demonstrate
R168 T378 T377 arg2Of ChIP,(
R169 T379 T377 arg3Of ),(
R170 T380 T374 arg2Of assays,and
R171 T380 T375 arg1Of assays,chromatin
R172 T380 T376 arg1Of assays,immunoprecipitation
R173 T380 T377 arg1Of assays,(
R174 T383 T384 arg1Of Sox6,acts
R175 T384 T381 arg2Of acts,demonstrate
R176 T384 T382 arg1Of acts,that
R177 T384 T385 arg1Of acts,as
R178 T384 T388 arg1Of acts,by
R179 T387 T385 arg2Of repressor,as
R180 T387 T386 arg1Of repressor,a
R181 T390 T388 arg2Of binding,by
R182 T390 T389 arg1Of binding,directly
R183 T390 T391 arg1Of binding,to
R184 T394 T391 arg2Of promoter,to
R185 T394 T392 arg1Of promoter,the
R186 T394 T393 arg1Of promoter,ɛy

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T155 109-113 Protein denotes Sox6
T156 161-163 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T478 109-113 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T172 146-153 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T178 48-57 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T96 0-173 Sentence denotes Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts as a repressor by directly binding to the ɛy promoter.
T8 0-173 Sentence denotes Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts as a repressor by directly binding to the ɛy promoter.

simple1

Id Subject Object Predicate Lexical cue
T241 161-163 Protein denotes ɛy
T240 109-113 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T885 109-113 Protein denotes Sox6
T886 161-163 Protein denotes ɛy
T899 146-153 Binding denotes binding
R589 T885 T899 themeOf Sox6,binding
R590 T886 T899 themeOf ɛy,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T493 109-113 Protein denotes Sox6
T494 161-163 Protein denotes ɛy
T509 146-153 Binding denotes binding
R450 T493 T509 themeOf Sox6,binding
R451 T494 T509 themeOf ɛy,binding

DLUT931

Id Subject Object Predicate Lexical cue
T524 109-113 Protein denotes Sox6
T525 161-163 Protein denotes ɛy
T538 146-153 Binding denotes binding
R465 T524 T538 themeOf Sox6,binding
R466 T525 T538 themeOf ɛy,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T867 137-172 Binding denotes directly binding to the ɛy promoter
T840 154-172 Entity denotes to the ɛy promoter
T855 48-57 Entity denotes chromatin
T858 161-163 Protein denotes ɛy
T862 109-113 Protein denotes Sox6
R573 T840 T858 partOf to the ɛy promoter,ɛy
R574 T840 T867 themeOf to the ɛy promoter,directly binding to the ɛy promoter

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T719 154-156 TO denotes to
T718 146-153 JJ denotes binding
T717 137-145 RB denotes directly
T716 134-136 IN denotes by
T715 124-133 NN denotes repressor
T714 122-123 DT denotes a
T713 119-121 IN denotes as
T712 114-118 NNS denotes acts
T711 109-113 JJ denotes Sox6
T710 104-108 IN denotes that
T709 92-103 VBP denotes demonstrate
T708 85-91 NNS denotes assays
T707 83-84 -RRB- denotes )
T706 79-83 NNP denotes ChIP
T705 78-79 -LRB- denotes (
T704 58-77 NN denotes immunoprecipitation
T703 48-57 NN denotes chromatin
T702 44-47 CC denotes and
T701 42-43 -RRB- denotes )
T700 38-42 NNP denotes EMSA
T699 37-38 -LRB- denotes (
T698 31-36 NN denotes assay
T697 25-30 NN denotes shift
T696 16-24 NN denotes mobility
T695 0-15 JJ denotes Electrophoretic
T720 157-160 DT denotes the
T721 161-163 JJ denotes ɛy
T722 164-172 NN denotes promoter
T723 172-173 . denotes .
R391 T695 T698 amod Electrophoretic,assay
R392 T696 T698 compound mobility,assay
R393 T697 T698 compound shift,assay
R394 T698 T708 nmod assay,assays
R395 T699 T700 punct (,EMSA
R396 T700 T698 appos EMSA,assay
R397 T701 T700 punct ),EMSA
R398 T702 T698 cc and,assay
R399 T703 T704 compound chromatin,immunoprecipitation
R400 T704 T698 conj immunoprecipitation,assay
R401 T705 T704 punct (,immunoprecipitation
R402 T706 T704 appos ChIP,immunoprecipitation
R403 T707 T704 punct ),immunoprecipitation
R404 T708 T709 nsubj assays,demonstrate
R405 T709 T709 ROOT demonstrate,demonstrate
R406 T710 T718 mark that,binding
R407 T711 T712 amod Sox6,acts
R408 T712 T718 nsubj acts,binding
R409 T713 T712 prep as,acts
R410 T714 T715 det a,repressor
R411 T715 T713 pobj repressor,as
R412 T716 T712 prep by,acts
R413 T717 T718 advmod directly,binding
R414 T718 T709 ccomp binding,demonstrate
R415 T719 T718 prep to,binding
R488 T720 T722 det the,promoter
R489 T721 T722 amod ɛy,promoter
R490 T722 T719 pobj promoter,to
R491 T723 T709 punct .,demonstrate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T218 146-153 Binding denotes binding
T217 164-172 Entity denotes promoter
T216 109-113 Protein denotes Sox6
R36 T216 T218 themeOf Sox6,binding
R37 T217 T218 Site promoter,binding

testone

Id Subject Object Predicate Lexical cue
T29 109-113 Protein denotes Sox6
T30 161-163 Protein denotes ɛy
T42 146-153 Binding denotes binding
T43 164-172 Entity denotes promoter
R7 T43 T30 partOf promoter,ɛy
R8 T43 T42 themeOf promoter,binding
R4 T29 T42 themeOf Sox6,binding

test3

Id Subject Object Predicate Lexical cue
T54 109-113 Protein denotes Sox6
T55 161-163 Protein denotes ɛy
T75 109-113 Protein denotes Sox6
T76 146-153 Binding denotes binding
T77 161-163 Protein denotes ɛy
R14 T75 T76 themeOf Sox6,binding
R15 T77 T76 themeOf ɛy,binding