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PMC:1359074 / 7331-8454 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-7567444-85760982 91-92 7567444 denotes 8
16462943-14988021-85760982 91-92 14988021 denotes 8
16462943-15527762-85760982 91-92 15527762 denotes 8
16462943-15846364-85760982 91-92 15846364 denotes 8
16462943-9755172-85760983 109-110 9755172 denotes 6
16462943-11702786-85760984 114-116 11702786 denotes 13
16462943-10760285-85760985 131-133 10760285 denotes 14
16462943-14530442-85760986 134-136 14530442 denotes 15
16462943-15730849-85760987 508-510 15730849 denotes 27
T11140 91-92 7567444 denotes 8
T59872 91-92 14988021 denotes 8
T36493 91-92 15527762 denotes 8
T10217 91-92 15846364 denotes 8
T1755 109-110 9755172 denotes 6
T16819 114-116 11702786 denotes 13
T38852 131-133 10760285 denotes 14
T5543 134-136 14530442 denotes 15
T90570 508-510 15730849 denotes 27

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2683 1108-1122 NN denotes erythropoiesis
T2682 1097-1107 JJ denotes definitive
T2681 1094-1096 IN denotes in
T2680 1084-1093 NN denotes functions
T2679 1079-1083 NN denotes Sox6
T2678 1074-1078 IN denotes that
T2677 1060-1073 VB denotes demonstrating
T2676 1058-1059 -COMMA- denotes ,
T2675 1053-1058 NN denotes liver
T2674 1047-1052 JJ denotes fetal
T2673 1043-1046 DT denotes the
T2672 1040-1042 IN denotes in
T2671 1030-1039 VB denotes expressed
T2670 1018-1029 RB denotes ectopically
T2669 1015-1017 VB denotes is
T2668 1008-1014 NN denotes globin
T2667 1005-1007 JJ denotes ɛy
T2666 1003-1004 -COMMA- denotes ,
T2665 999-1003 NN denotes Sox6
T2664 996-998 IN denotes of
T2663 988-995 NN denotes absence
T2662 984-987 DT denotes the
T2661 981-983 IN denotes In
T2660 973-979 NN denotes globin
T2659 970-972 JJ denotes ɛy
T2658 967-969 IN denotes of
T2657 959-966 NN denotes pattern
T2656 948-958 NN denotes expression
T2655 939-947 JJ denotes opposite
T2654 935-938 DT denotes the
T2653 933-934 -COMMA- denotes ,
T2652 928-933 NN denotes liver
T2651 922-927 JJ denotes fetal
T2650 919-921 IN denotes in
T2649 909-918 VB denotes expressed
T2648 906-908 VB denotes is
T2647 902-905 CC denotes but
T2646 900-901 -COMMA- denotes ,
T2645 893-900 NN denotes islands
T2644 887-892 NN denotes blood
T2643 883-886 NN denotes sac
T2642 878-882 NN denotes yolk
T2641 875-877 IN denotes in
T2640 865-874 VB denotes expressed
T2639 861-864 RB denotes not
T2638 858-860 VB denotes is
T2637 853-857 NN denotes Sox6
T2636 851-852 -COMMA- denotes ,
T2635 847-851 NN denotes mice
T2634 845-846 -RRB- denotes )
T2633 843-845 JJ denotes WT
T2632 842-843 -LRB- denotes (
T2631 832-841 JJ denotes wild-type
T2630 829-831 IN denotes In
T2629 814-827 NN denotes transcription
T2628 810-813 PRP-DOLLAR- denotes its
T2627 800-809 VB denotes represses
T2626 796-799 CC denotes and
T2625 789-795 NN denotes globin
T2624 786-788 JJ denotes ɛy
T2623 783-785 IN denotes of
T2622 774-782 NN denotes promoter
T2621 765-773 JJ denotes proximal
T2620 761-764 DT denotes the
T2619 758-760 TO denotes to
T2618 752-757 VB denotes binds
T2617 747-751 NN denotes Sox6
T2616 742-746 IN denotes that
T2615 737-741 VB denotes show
T2614 734-736 PRP denotes We
T2613 728-732 NN denotes gene
T2612 721-727 NN denotes globin
T2611 718-720 JJ denotes ɛy
T2610 714-717 DT denotes the
T2609 711-713 IN denotes on
T2608 706-710 NN denotes Sox6
T2607 703-705 IN denotes of
T2606 695-702 NN denotes effects
T2605 691-694 DT denotes the
T2604 678-690 VB denotes characterize
T2603 674-677 CC denotes and
T2602 665-673 VB denotes describe
T2601 662-664 PRP denotes we
T2600 657-661 RB denotes Here
T2599 651-655 NN denotes gene
T2598 644-650 NN denotes globin
T2597 641-643 JJ denotes ɛy
T2596 631-640 JJ denotes embryonic
T2595 627-630 DT denotes the
T2594 624-626 IN denotes of
T2593 613-623 NN denotes expression
T2592 608-612 JJ denotes high
T2591 605-607 IN denotes of
T2590 593-604 NN denotes persistence
T2589 589-592 DT denotes the
T2588 586-588 VB denotes is
T2587 579-585 NN denotes effect
T2586 571-578 JJ denotes extreme
T2585 566-570 RB denotes most
T2584 562-565 DT denotes The
T2583 555-560 NN denotes genes
T2582 548-554 NN denotes globin
T2581 538-547 JJ denotes embryonic
T2580 535-537 IN denotes of
T2579 524-534 NN denotes expression
T2578 517-523 JJ denotes higher
T2577 513-516 CC denotes and
T2576 511-512 -RRB- denotes )
T2575 510-511 -RRB- denotes ]
T2574 508-510 CD denotes 27
T2573 507-508 -LRB- denotes [
T2572 495-506 NN denotes bloodstream
T2571 491-494 DT denotes the
T2570 482-490 VB denotes entering
T2569 479-481 TO denotes to
T2568 473-478 JJ denotes prior
T2567 463-472 VB denotes enucleate
T2566 454-462 RB denotes normally
T2565 449-453 IN denotes that
T2564 448-449 -LRB- denotes (
T2563 435-447 NN denotes erythrocytes
T2562 432-434 IN denotes of
T2561 421-431 NN denotes maturation
T2560 413-420 VB denotes delayed
T2559 405-412 VB denotes include
T2558 397-404 NN denotes effects
T2557 391-396 DT denotes These
T2556 375-389 NN denotes erythropoiesis
T2555 372-374 IN denotes on
T2554 364-371 NN denotes effects
T2553 352-363 JJ denotes pleiotropic
T2552 345-351 VB denotes exerts
T2551 340-344 RB denotes also
T2550 335-339 NN denotes Sox6
T2549 330-334 IN denotes that
T2548 321-329 VB denotes describe
T2547 318-320 PRP denotes we
T2546 316-317 -COMMA- denotes ,
T2545 311-316 NN denotes study
T2544 306-310 DT denotes this
T2543 303-305 IN denotes In
T2542 300-301 -RRB- denotes ]
T2541 298-300 CD denotes 28
T2540 297-298 -LRB- denotes [
T2539 289-296 NN denotes lineage
T2538 282-288 NN denotes marrow
T2537 277-281 NN denotes bone
T2536 271-276 NN denotes mouse
T2535 265-270 JJ denotes adult
T2534 262-264 IN denotes of
T2533 250-261 NN denotes progenitors
T2532 238-249 JJ denotes multipotent
T2531 233-237 IN denotes with
T2530 224-232 VB denotes compared
T2529 222-223 -RRB- denotes )
T2528 216-222 NN denotes LT-HSC
T2527 215-216 -LRB- denotes (
T2526 209-214 NN denotes cells
T2525 204-208 NN denotes stem
T2524 190-203 NN denotes hematopoiesis
T2523 180-189 JJ denotes long-term
T2522 177-179 IN denotes in
T2521 165-176 VB denotes upregulated
T2520 162-164 VB denotes is
T2519 157-161 NN denotes Sox6
T2518 152-156 IN denotes that
T2517 146-151 VB denotes shown
T2516 142-145 VB denotes was
T2515 139-141 PRP denotes it
T2514 137-138 -COMMA- denotes ,
T2513 136-137 -RRB- denotes ]
T2512 131-136 CD denotes 14,15
T2511 130-131 -LRB- denotes [
T2510 123-129 NN denotes muscle
T2509 119-122 CC denotes and
T2508 117-118 -COMMA- denotes ,
T2507 116-117 -RRB- denotes ]
T2506 109-116 CD denotes 6,12,13
T2505 108-109 -LRB- denotes [
T2504 98-107 NN denotes cartilage
T2503 96-97 -COMMA- denotes ,
T2502 95-96 -RRB- denotes ]
T2501 91-95 CD denotes 8–11
T2500 90-91 -LRB- denotes [
T2499 83-89 NN denotes system
T2498 75-82 JJ denotes nervous
T2497 67-74 JJ denotes central
T2496 63-66 DT denotes the
T2495 60-62 IN denotes of
T2494 48-59 NN denotes development
T2493 44-47 DT denotes the
T2492 41-43 IN denotes in
T2491 36-40 NN denotes role
T2490 26-35 JJ denotes important
T2489 23-25 DT denotes an
T2488 15-22 VB denotes playing
T2487 12-14 TO denotes to
T2486 3-11 NN denotes addition
T2485 0-2 IN denotes In
R1599 T2561 T2560 arg2Of maturation,delayed
R1614 T2561 T2562 arg1Of maturation,of
R1615 T2561 T2564 arg1Of maturation,(
R1616 T2561 T2577 arg1Of maturation,and
R1620 T2563 T2562 arg2Of erythrocytes,of
R1624 T2486 T2487 arg1Of addition,to
R1625 T2565 T2564 arg2Of that,(
R1626 T2486 T2503 arg1Of addition,","
R1627 T2565 T2567 arg1Of that,enucleate
R1628 T2488 T2487 arg2Of playing,to
R1629 T2488 T2492 arg1Of playing,in
R1630 T2567 T2566 arg1Of enucleate,normally
R1631 T2491 T2488 arg2Of role,playing
R1632 T2491 T2489 arg1Of role,an
R1633 T2491 T2490 arg1Of role,important
R1634 T2567 T2569 arg1Of enucleate,to
R1635 T2494 T2492 arg2Of development,in
R1636 T2494 T2493 arg1Of development,the
R1637 T2494 T2495 arg1Of development,of
R1638 T2569 T2568 arg1Of to,prior
R1639 T2570 T2569 arg2Of entering,to
R1640 T2499 T2495 arg2Of system,of
R1641 T2499 T2496 arg1Of system,the
R1642 T2499 T2497 arg1Of system,central
R1643 T2499 T2498 arg1Of system,nervous
R1644 T2499 T2500 arg1Of system,[
R1645 T2501 T2500 arg2Of 8–11,[
R1646 T2572 T2570 arg2Of bloodstream,entering
R1647 T2502 T2500 arg3Of ],[
R1648 T2503 T2509 arg1Of ",",and
R1649 T2504 T2503 arg2Of cartilage,","
R1650 T2504 T2505 arg1Of cartilage,[
R1651 T2572 T2571 arg1Of bloodstream,the
R1652 T2506 T2505 arg2Of "6,12,13",[
R1653 T2507 T2505 arg3Of ],[
R1654 T2572 T2573 arg1Of bloodstream,[
R1655 T2574 T2573 arg2Of 27,[
R1656 T2509 T2485 arg2Of and,In
R1657 T2509 T2508 arg1Of and,","
R1658 T2510 T2509 arg2Of muscle,and
R1659 T2510 T2511 arg1Of muscle,[
R1660 T2512 T2511 arg2Of "14,15",[
R1661 T2513 T2511 arg3Of ],[
R1662 T2515 T2516 arg1Of it,was
R1663 T2515 T2517 arg2Of it,shown
R1664 T2575 T2573 arg3Of ],[
R1665 T2517 T2485 arg1Of shown,In
R1666 T2517 T2514 arg1Of shown,","
R1667 T2517 T2516 arg2Of shown,was
R1668 T2519 T2520 arg1Of Sox6,is
R1669 T2519 T2521 arg2Of Sox6,upregulated
R1670 T2576 T2564 arg3Of ),(
R1671 T2521 T2517 arg3Of upregulated,shown
R1672 T2521 T2518 arg1Of upregulated,that
R1673 T2521 T2520 arg2Of upregulated,is
R1674 T2521 T2522 arg1Of upregulated,in
R1675 T2521 T2530 arg1Of upregulated,compared
R1676 T2521 T2540 arg1Of upregulated,[
R1677 T2577 T2559 arg2Of and,include
R1678 T2526 T2522 arg2Of cells,in
R1679 T2526 T2523 arg1Of cells,long-term
R1680 T2526 T2524 arg1Of cells,hematopoiesis
R1681 T2526 T2525 arg1Of cells,stem
R1682 T2526 T2527 arg1Of cells,(
R1683 T2528 T2527 arg2Of LT-HSC,(
R1684 T2579 T2577 arg2Of expression,and
R1685 T2529 T2527 arg3Of ),(
R1686 T2531 T2530 arg2Of with,compared
R1687 T2579 T2578 arg1Of expression,higher
R1688 T2579 T2580 arg1Of expression,of
R1689 T2533 T2531 arg2Of progenitors,with
R1690 T2533 T2532 arg1Of progenitors,multipotent
R1691 T2533 T2534 arg1Of progenitors,of
R1692 T2583 T2580 arg2Of genes,of
R1693 T2539 T2534 arg2Of lineage,of
R1694 T2539 T2535 arg1Of lineage,adult
R1695 T2539 T2536 arg1Of lineage,mouse
R1696 T2539 T2537 arg1Of lineage,bone
R1697 T2539 T2538 arg1Of lineage,marrow
R1698 T2583 T2581 arg1Of genes,embryonic
R1699 T2541 T2540 arg2Of 28,[
R1700 T2542 T2540 arg3Of ],[
R1701 T2583 T2582 arg1Of genes,globin
R1702 T2586 T2585 arg1Of extreme,most
R1703 T2545 T2543 arg2Of study,In
R1704 T2545 T2544 arg1Of study,this
R1705 T2547 T2548 arg2Of we,describe
R1706 T2548 T2543 arg1Of describe,In
R1707 T2548 T2546 arg1Of describe,","
R1708 T2550 T2552 arg1Of Sox6,exerts
R1709 T2587 T2584 arg1Of effect,The
R1710 T2552 T2548 arg1Of exerts,describe
R1711 T2552 T2549 arg1Of exerts,that
R1712 T2552 T2551 arg1Of exerts,also
R1713 T2552 T2555 arg1Of exerts,on
R1714 T2554 T2552 arg2Of effects,exerts
R1715 T2554 T2553 arg1Of effects,pleiotropic
R1716 T2556 T2555 arg2Of erythropoiesis,on
R1717 T2587 T2586 arg1Of effect,extreme
R1718 T2587 T2588 arg1Of effect,is
R1719 T2558 T2557 arg1Of effects,These
R1720 T2558 T2559 arg1Of effects,include
R1721 T2590 T2588 arg2Of persistence,is
R1722 T2590 T2589 arg1Of persistence,the
R1723 T2590 T2591 arg1Of persistence,of
R1724 T2593 T2591 arg2Of expression,of
R1725 T2657 T2653 arg2Of pattern,","
R1726 T2657 T2654 arg1Of pattern,the
R1727 T2657 T2655 arg1Of pattern,opposite
R1728 T2657 T2656 arg1Of pattern,expression
R1729 T2657 T2658 arg1Of pattern,of
R1730 T2660 T2658 arg2Of globin,of
R1731 T2660 T2659 arg1Of globin,ɛy
R1732 T2593 T2592 arg1Of expression,high
R1733 T2661 T2662 arg1Of In,the
R1734 T2661 T2664 arg1Of In,of
R1735 T2593 T2594 arg1Of expression,of
R1736 T2663 T2661 arg2Of absence,In
R1737 T2599 T2594 arg2Of gene,of
R1738 T2665 T2661 arg3Of Sox6,In
R1739 T2668 T2667 arg1Of globin,ɛy
R1740 T2668 T2669 arg1Of globin,is
R1741 T2668 T2671 arg2Of globin,expressed
R1742 T2671 T2661 arg1Of expressed,In
R1743 T2599 T2595 arg1Of gene,the
R1744 T2671 T2666 arg1Of expressed,","
R1745 T2671 T2669 arg2Of expressed,is
R1746 T2671 T2670 arg1Of expressed,ectopically
R1747 T2671 T2672 arg1Of expressed,in
R1748 T2671 T2676 arg1Of expressed,","
R1749 T2671 T2677 modOf expressed,demonstrating
R1750 T2599 T2596 arg1Of gene,embryonic
R1751 T2599 T2597 arg1Of gene,ɛy
R1752 T2675 T2672 arg2Of liver,in
R1753 T2675 T2673 arg1Of liver,the
R1754 T2675 T2674 arg1Of liver,fetal
R1755 T2599 T2598 arg1Of gene,globin
R1756 T2601 T2602 arg1Of we,describe
R1757 T2680 T2677 arg2Of functions,demonstrating
R1758 T2680 T2678 arg1Of functions,that
R1759 T2680 T2679 arg1Of functions,Sox6
R1760 T2680 T2681 arg1Of functions,in
R1761 T2683 T2681 arg2Of erythropoiesis,in
R1762 T2683 T2682 arg1Of erythropoiesis,definitive
R1763 T2601 T2604 arg1Of we,characterize
R1764 T2602 T2603 arg1Of describe,and
R1765 T2603 T2600 arg1Of and,Here
R1766 T2604 T2603 arg2Of characterize,and
R1767 T2606 T2602 arg2Of effects,describe
R1768 T2606 T2604 arg2Of effects,characterize
R1769 T2606 T2605 arg1Of effects,the
R1770 T2606 T2607 arg1Of effects,of
R1771 T2606 T2609 arg1Of effects,on
R1772 T2608 T2607 arg2Of Sox6,of
R1773 T2613 T2609 arg2Of gene,on
R1776 T2613 T2610 arg1Of gene,the
R1777 T2613 T2611 arg1Of gene,ɛy
R1778 T2613 T2612 arg1Of gene,globin
R1779 T2614 T2615 arg1Of We,show
R1781 T2617 T2618 arg1Of Sox6,binds
R1783 T2617 T2627 arg1Of Sox6,represses
R1784 T2618 T2619 arg1Of binds,to
R1785 T2618 T2626 arg1Of binds,and
R1787 T2622 T2619 arg2Of promoter,to
R1789 T2622 T2620 arg1Of promoter,the
R1790 T2622 T2621 arg1Of promoter,proximal
R1791 T2622 T2623 arg1Of promoter,of
R1792 T2625 T2623 arg2Of globin,of
R1795 T2625 T2624 arg1Of globin,ɛy
R1796 T2626 T2615 arg2Of and,show
R1797 T2626 T2616 arg1Of and,that
R1798 T2627 T2626 arg2Of represses,and
R1799 T2629 T2627 arg2Of transcription,represses
R1800 T2629 T2628 arg1Of transcription,its
R1801 T2631 T2632 arg1Of wild-type,(
R1803 T2633 T2632 arg2Of WT,(
R1804 T2634 T2632 arg3Of ),(
R1806 T2635 T2630 arg2Of mice,In
R1807 T2635 T2631 arg1Of mice,wild-type
R1810 T2637 T2638 arg1Of Sox6,is
R1812 T2637 T2640 arg2Of Sox6,expressed
R1813 T2637 T2648 arg1Of Sox6,is
R1814 T2637 T2649 arg2Of Sox6,expressed
R1815 T2640 T2638 arg2Of expressed,is
R1817 T2640 T2639 arg1Of expressed,not
R1818 T2640 T2641 arg1Of expressed,in
R1819 T2640 T2647 arg1Of expressed,but
R1821 T2645 T2641 arg2Of islands,in
R1823 T2645 T2642 arg1Of islands,yolk
R1824 T2645 T2643 arg1Of islands,sac
R1825 T2645 T2644 arg1Of islands,blood
R1827 T2647 T2630 arg1Of but,In
R1829 T2647 T2636 arg1Of but,","
R1830 T2647 T2646 arg1Of but,","
R1831 T2649 T2647 arg2Of expressed,but
R1833 T2649 T2648 arg2Of expressed,is
R1834 T2649 T2650 arg1Of expressed,in
R1835 T2652 T2650 arg2Of liver,in
R1838 T2652 T2651 arg1Of liver,fetal
R1839 T2652 T2653 arg1Of liver,","

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1414 786-795 Antecedent denotes ɛy globin
T1413 810-813 Anaphor denotes its
R752 T1413 T1414 boundBy its,ɛy globin

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1468 1079-1083 Protein denotes Sox6
T1467 1005-1014 Protein denotes ɛy globin
T1466 999-1003 Protein denotes Sox6
T1465 970-979 Protein denotes ɛy globin
T1464 853-857 Protein denotes Sox6
T1463 786-795 Protein denotes ɛy globin
T1462 747-751 Protein denotes Sox6
T1461 718-727 Protein denotes ɛy globin
T1460 706-710 Protein denotes Sox6
T1459 641-650 Protein denotes ɛy globin
T1458 335-339 Protein denotes Sox6
T1457 157-161 Protein denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T1290 421-447 http://purl.obolibrary.org/obo/GO_0043249 denotes maturation of erythrocytes
T1289 190-203 http://purl.obolibrary.org/obo/GO_0030097 denotes hematopoiesis
T1287 1097-1122 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T1284 1108-1122 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T1283 375-389 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T1276 1008-1014 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1275 973-979 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1274 789-795 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1273 721-727 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1272 644-650 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1271 548-554 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1261 48-89 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system
T1259 48-89 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T1257 48-59 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T1242 814-827 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T1482 1008-1014 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1481 973-979 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1480 789-795 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1479 721-727 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1478 644-650 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1477 548-554 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T1499 219-222 http://purl.obolibrary.org/obo/GO_0035301 denotes HSC
T1497 878-882 http://purl.obolibrary.org/obo/GO_0060417 denotes yolk
T1493 209-214 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T1234 981-1123 Sentence denotes In the absence of Sox6, ɛy globin is ectopically expressed in the fetal liver, demonstrating that Sox6 functions in definitive erythropoiesis.
T1233 829-980 Sentence denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin.
T1232 734-828 Sentence denotes We show that Sox6 binds to the proximal promoter of ɛy globin and represses its transcription.
T1231 657-733 Sentence denotes Here we describe and characterize the effects of Sox6 on the ɛy globin gene.
T1230 562-656 Sentence denotes The most extreme effect is the persistence of high expression of the embryonic ɛy globin gene.
T1229 391-561 Sentence denotes These effects include delayed maturation of erythrocytes (that normally enucleate prior to entering the bloodstream [27]) and higher expression of embryonic globin genes.
T1228 303-390 Sentence denotes In this study, we describe that Sox6 also exerts pleiotropic effects on erythropoiesis.
T1227 0-302 Sentence denotes In addition to playing an important role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15], it was shown that Sox6 is upregulated in long-term hematopoiesis stem cells (LT-HSC) compared with multipotent progenitors of adult mouse bone marrow lineage [28].
T47 0-302 Sentence denotes In addition to playing an important role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15], it was shown that Sox6 is upregulated in long-term hematopoiesis stem cells (LT-HSC) compared with multipotent progenitors of adult mouse bone marrow lineage [28].
T48 303-390 Sentence denotes In this study, we describe that Sox6 also exerts pleiotropic effects on erythropoiesis.
T49 391-561 Sentence denotes These effects include delayed maturation of erythrocytes (that normally enucleate prior to entering the bloodstream [27]) and higher expression of embryonic globin genes.
T50 562-656 Sentence denotes The most extreme effect is the persistence of high expression of the embryonic ɛy globin gene.
T51 657-733 Sentence denotes Here we describe and characterize the effects of Sox6 on the ɛy globin gene.
T52 734-828 Sentence denotes We show that Sox6 binds to the proximal promoter of ɛy globin and represses its transcription.
T53 829-980 Sentence denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin.
T54 981-1123 Sentence denotes In the absence of Sox6, ɛy globin is ectopically expressed in the fetal liver, demonstrating that Sox6 functions in definitive erythropoiesis.

ICD10

Id Subject Object Predicate Lexical cue
T1484 75-82 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T1695 1079-1083 Protein denotes Sox6
T1694 1005-1014 Protein denotes ɛy globin
T1693 999-1003 Protein denotes Sox6
T1692 970-979 Protein denotes ɛy globin
T1691 853-857 Protein denotes Sox6
T1690 786-795 Protein denotes ɛy globin
T1689 747-751 Protein denotes Sox6
T1688 718-727 Protein denotes ɛy globin
T1687 706-710 Protein denotes Sox6
T1686 641-650 Protein denotes ɛy globin
T1685 335-339 Protein denotes Sox6
T1684 157-161 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4299 1030-1039 Gene_expression denotes expressed
T4298 988-995 Negative_regulation denotes absence
T4297 948-958 Gene_expression denotes expression
T4296 865-874 Gene_expression denotes expressed
T4295 909-918 Gene_expression denotes expressed
T4294 752-757 Binding denotes binds
T4293 613-623 Gene_expression denotes expression
T4292 165-176 Positive_regulation denotes upregulated
T4273 1079-1083 Protein denotes Sox6
T4272 1005-1014 Protein denotes ɛy globin
T4271 999-1003 Protein denotes Sox6
T4270 970-979 Protein denotes ɛy globin
T4269 853-857 Protein denotes Sox6
T4268 786-795 Protein denotes ɛy globin
T4267 747-751 Protein denotes Sox6
T4266 718-727 Protein denotes ɛy globin
T4265 706-710 Protein denotes Sox6
T4264 641-650 Protein denotes ɛy globin
T4263 335-339 Protein denotes Sox6
T4262 157-161 Protein denotes Sox6
R3048 T4262 T4292 themeOf Sox6,upregulated
R3049 T4264 T4293 themeOf ɛy globin,expression
R3050 T4267 T4294 themeOf Sox6,binds
R3051 T4268 T4294 themeOf ɛy globin,binds
R3052 T4269 T4296 themeOf Sox6,expressed
R3053 T4269 T4295 themeOf Sox6,expressed
R3054 T4270 T4295 themeOf ɛy globin,expressed
R3055 T4270 T4297 themeOf ɛy globin,expression
R3056 T4271 T4298 themeOf Sox6,absence
R3057 T4272 T4299 themeOf ɛy globin,expressed
R3058 T4272 T4298 themeOf ɛy globin,absence

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2760 948-958 Gene_expression denotes expression
T2759 909-918 Gene_expression denotes expressed
T2758 865-874 Gene_expression denotes expressed
T2757 752-757 Binding denotes binds
T2756 695-702 Regulation denotes effects
T2755 613-623 Gene_expression denotes expression
T2754 165-176 Positive_regulation denotes upregulated
T2737 1079-1083 Protein denotes Sox6
T2736 1005-1014 Protein denotes ɛy globin
T2735 999-1003 Protein denotes Sox6
T2734 970-979 Protein denotes ɛy globin
T2733 853-857 Protein denotes Sox6
T2732 786-795 Protein denotes ɛy globin
T2731 747-751 Protein denotes Sox6
T2730 718-727 Protein denotes ɛy globin
T2729 706-710 Protein denotes Sox6
T2728 641-650 Protein denotes ɛy globin
T2727 335-339 Protein denotes Sox6
T2726 157-161 Protein denotes Sox6
T2761 988-995 Negative_regulation denotes absence
R1828 T2726 T2754 themeOf Sox6,upregulated
R1832 T2728 T2755 themeOf ɛy globin,expression
R1836 T2729 T2756 themeOf Sox6,effects
R1837 T2731 T2757 themeOf Sox6,binds
R1841 T2732 T2757 themeOf ɛy globin,binds
R1842 T2733 T2758 themeOf Sox6,expressed
R1843 T2733 T2759 themeOf Sox6,expressed
R1845 T2734 T2760 themeOf ɛy globin,expression
R1847 T2735 T2761 themeOf Sox6,absence

DLUT931

Id Subject Object Predicate Lexical cue
T2844 988-995 Negative_regulation denotes absence
T2843 948-958 Gene_expression denotes expression
T2842 909-918 Gene_expression denotes expressed
T2841 865-874 Gene_expression denotes expressed
T2840 800-809 Negative_regulation denotes represses
T2839 814-827 Transcription denotes transcription
T2838 752-757 Binding denotes binds
T2837 695-702 Regulation denotes effects
T2836 613-623 Gene_expression denotes expression
T2835 364-371 Regulation denotes effects
T2834 165-176 Positive_regulation denotes upregulated
T2815 1079-1083 Protein denotes Sox6
T2814 1005-1014 Protein denotes ɛy globin
T2813 999-1003 Protein denotes Sox6
T2812 970-979 Protein denotes ɛy globin
T2811 853-857 Protein denotes Sox6
T2810 786-795 Protein denotes ɛy globin
T2809 747-751 Protein denotes Sox6
T2806 641-650 Protein denotes ɛy globin
T2805 335-339 Protein denotes Sox6
T2804 157-161 Protein denotes Sox6
T2807 706-710 Protein denotes Sox6
T2808 718-727 Protein denotes ɛy globin
R1866 T2807 T2837 causeOf Sox6,effects
R1870 T2808 T2837 themeOf ɛy globin,effects
R1872 T2809 T2838 themeOf Sox6,binds
R1873 T2809 T2840 causeOf Sox6,represses
R1874 T2810 T2838 themeOf ɛy globin,binds
R1875 T2810 T2839 themeOf ɛy globin,transcription
R1876 T2811 T2841 themeOf Sox6,expressed
R1877 T2811 T2842 themeOf Sox6,expressed
R1879 T2812 T2843 themeOf ɛy globin,expression
R1880 T2812 T2842 themeOf ɛy globin,expressed
R1881 T2814 T2844 themeOf ɛy globin,absence
R1885 T2804 T2834 themeOf Sox6,upregulated
R1887 T2805 T2835 themeOf Sox6,effects
R1888 T2806 T2836 themeOf ɛy globin,expression
R1890 T2839 T2840 themeOf transcription,represses

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue Negation
T4120 631-640 Protein denotes embryonic
T4116 706-710 Protein denotes Sox6
T4111 714-732 Protein denotes the ɛy globin gene
T4101 1005-1014 Protein denotes ɛy globin
T4099 878-900 Entity denotes yolk sac blood islands
T4097 644-650 Protein denotes globin
T4095 847-851 Protein denotes mice
T4094 335-339 Protein denotes Sox6
T4090 216-222 Entity denotes LT-HSC
T4087 146-161 Protein denotes shown that Sox6
T4076 786-795 Protein denotes ɛy globin
T4071 758-795 Entity denotes to the proximal promoter of ɛy globin
T4053 624-655 Protein denotes of the embryonic ɛy globin gene
T4050 847-857 Protein denotes mice, Sox6
T4047 721-727 Protein denotes globin
T4046 970-979 Protein denotes ɛy globin
T4036 548-554 Protein denotes globin
T4030 432-447 Entity denotes of erythrocytes
T4216 608-655 Gene_expression denotes high expression of the embryonic ɛy globin gene
T4207 747-795 Binding denotes Sox6 binds to the proximal promoter of ɛy globin
T4205 981-1122 Gene_expression denotes In the absence of Sox6, ɛy globin is ectopically expressed in the fetal liver, demonstrating that Sox6 functions in definitive erythropoiesis
T4198 829-900 Gene_expression denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands true
T4197 517-560 Gene_expression denotes higher expression of embryonic globin genes
T4195 146-176 Positive_regulation denotes shown that Sox6 is upregulated
T4194 747-827 Negative_regulation denotes Sox6 binds to the proximal promoter of ɛy globin and represses its transcription
T4190 535-560 Protein denotes of embryonic globin genes
T4179 180-223 Entity denotes long-term hematopoiesis stem cells (LT-HSC)
T4178 996-1003 Protein denotes of Sox6
T4149 624-655 Protein denotes of the embryonic ɛy globin gene
T4146 714-732 Protein denotes the ɛy globin gene
T4143 535-560 Protein denotes of embryonic globin genes
T4159 1079-1083 Protein denotes Sox6
T4151 747-751 Protein denotes Sox6
R2978 T4050 T4198 themeOf "mice, Sox6","In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands"
R3002 T4071 T4207 themeOf to the proximal promoter of ɛy globin,Sox6 binds to the proximal promoter of ɛy globin
R3010 T4087 T4195 themeOf shown that Sox6,shown that Sox6 is upregulated
R3016 T4101 T4205 themeOf ɛy globin,"In the absence of Sox6, ɛy globin is ectopically expressed in the fetal liver, demonstrating that Sox6 functions in definitive erythropoiesis"
R3019 T4151 T4207 themeOf Sox6,Sox6 binds to the proximal promoter of ɛy globin
R3028 T4190 T4197 themeOf of embryonic globin genes,higher expression of embryonic globin genes
R2983 T4053 T4216 themeOf of the embryonic ɛy globin gene,high expression of the embryonic ɛy globin gene
R3018 T4151 T4194 causeOf Sox6,Sox6 binds to the proximal promoter of ɛy globin and represses its transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3941 1122-1123 . denotes .
T3940 1108-1122 NNS denotes erythropoiesis
T3939 1097-1107 JJ denotes definitive
T3938 1094-1096 IN denotes in
T3937 1084-1093 NNS denotes functions
T3936 1079-1083 JJ denotes Sox6
T3935 1074-1078 IN denotes that
T3934 1060-1073 VBG denotes demonstrating
T3933 1058-1059 , denotes ,
T3932 1053-1058 NN denotes liver
T3931 1047-1052 JJ denotes fetal
T3930 1043-1046 DT denotes the
T3929 1040-1042 IN denotes in
T3928 1030-1039 VBN denotes expressed
T3927 1018-1029 RB denotes ectopically
T3926 1015-1017 VBZ denotes is
T3925 1008-1014 NN denotes globin
T3924 1005-1007 JJ denotes ɛy
T3923 1003-1004 , denotes ,
T3922 999-1003 NNP denotes Sox6
T3921 996-998 IN denotes of
T3920 988-995 NN denotes absence
T3919 984-987 DT denotes the
T3918 981-983 IN denotes In
T3917 979-980 . denotes .
T3916 973-979 NN denotes globin
T3915 970-972 JJ denotes ɛy
T3914 967-969 IN denotes of
T3913 959-966 NN denotes pattern
T3912 948-958 NN denotes expression
T3911 939-947 JJ denotes opposite
T3910 935-938 DT denotes the
T3909 933-934 , denotes ,
T3908 928-933 NN denotes liver
T3907 922-927 JJ denotes fetal
T3906 919-921 IN denotes in
T3905 909-918 VBN denotes expressed
T3904 906-908 VBZ denotes is
T3903 902-905 CC denotes but
T3902 900-901 , denotes ,
T3901 893-900 NNS denotes islands
T3900 887-892 NN denotes blood
T3899 883-886 NN denotes sac
T3898 878-882 NN denotes yolk
T3897 875-877 IN denotes in
T3896 865-874 VBN denotes expressed
T3895 861-864 RB denotes not
T3894 858-860 VBZ denotes is
T3893 853-857 NNP denotes Sox6
T3892 851-852 , denotes ,
T3891 847-851 NNS denotes mice
T3890 845-846 -RRB- denotes )
T3889 843-845 NNP denotes WT
T3888 842-843 -LRB- denotes (
T3887 832-841 JJ denotes wild-type
T3886 829-831 IN denotes In
T3885 827-828 . denotes .
T3884 814-827 NN denotes transcription
T3883 810-813 PRP$ denotes its
T3882 800-809 VBZ denotes represses
T3881 796-799 CC denotes and
T3880 789-795 NN denotes globin
T3879 786-788 JJ denotes ɛy
T3878 783-785 IN denotes of
T3877 774-782 NN denotes promoter
T3876 765-773 JJ denotes proximal
T3875 761-764 DT denotes the
T3874 758-760 TO denotes to
T3873 752-757 NNS denotes binds
T3872 747-751 JJ denotes Sox6
T3871 742-746 IN denotes that
T3870 737-741 VBP denotes show
T3869 734-736 PRP denotes We
T3868 732-733 . denotes .
T3867 728-732 NN denotes gene
T3866 721-727 NN denotes globin
T3865 718-720 JJ denotes ɛy
T3864 714-717 DT denotes the
T3863 711-713 IN denotes on
T3862 706-710 NNP denotes Sox6
T3861 703-705 IN denotes of
T3860 695-702 NNS denotes effects
T3859 691-694 DT denotes the
T3858 678-690 VBP denotes characterize
T3857 674-677 CC denotes and
T3856 665-673 VBP denotes describe
T3855 662-664 PRP denotes we
T3854 657-661 RB denotes Here
T3853 655-656 . denotes .
T3852 651-655 NN denotes gene
T3851 644-650 NN denotes globin
T3850 641-643 NN denotes ɛy
T3849 631-640 JJ denotes embryonic
T3848 627-630 DT denotes the
T3847 624-626 IN denotes of
T3846 613-623 NN denotes expression
T3845 608-612 JJ denotes high
T3844 605-607 IN denotes of
T3843 593-604 NN denotes persistence
T3842 589-592 DT denotes the
T3841 586-588 VBZ denotes is
T3840 579-585 NN denotes effect
T3839 571-578 JJ denotes extreme
T3838 566-570 RBS denotes most
T3837 562-565 DT denotes The
T3836 560-561 . denotes .
T3835 555-560 NNS denotes genes
T3834 548-554 NN denotes globin
T3833 538-547 JJ denotes embryonic
T3832 535-537 IN denotes of
T3831 524-534 NN denotes expression
T3830 517-523 JJR denotes higher
T3829 513-516 CC denotes and
T3828 511-512 -RRB- denotes )
T3827 510-511 NNP denotes ]
T3826 508-510 CD denotes 27
T3825 507-508 NNP denotes [
T3824 495-506 NN denotes bloodstream
T3823 491-494 DT denotes the
T3822 482-490 VBG denotes entering
T3821 479-481 TO denotes to
T3820 473-478 RB denotes prior
T3819 463-472 JJ denotes enucleate
T3818 454-462 RB denotes normally
T3817 449-453 IN denotes that
T3816 448-449 -LRB- denotes (
T3815 435-447 NNS denotes erythrocytes
T3814 432-434 IN denotes of
T3813 421-431 NN denotes maturation
T3812 413-420 VBN denotes delayed
T3811 405-412 VBP denotes include
T3810 397-404 NNS denotes effects
T3809 391-396 DT denotes These
T3808 389-390 . denotes .
T3807 375-389 NN denotes erythropoiesis
T3806 372-374 IN denotes on
T3805 364-371 NNS denotes effects
T3804 352-363 JJ denotes pleiotropic
T3803 345-351 VBZ denotes exerts
T3802 340-344 RB denotes also
T3801 335-339 NNP denotes Sox6
T3800 330-334 IN denotes that
T3799 321-329 VBP denotes describe
T3798 318-320 PRP denotes we
T3797 316-317 , denotes ,
T3796 311-316 NN denotes study
T3795 306-310 DT denotes this
T3794 303-305 IN denotes In
T3793 301-302 . denotes .
T3792 300-301 NNP denotes ]
T3791 298-300 CD denotes 28
T3790 297-298 NNP denotes [
T3789 289-296 NN denotes lineage
T3788 282-288 NN denotes marrow
T3787 277-281 NN denotes bone
T3786 271-276 NN denotes mouse
T3785 265-270 NN denotes adult
T3784 262-264 IN denotes of
T3783 250-261 NNS denotes progenitors
T3782 238-249 JJ denotes multipotent
T3781 233-237 IN denotes with
T3780 224-232 VBN denotes compared
T3779 222-223 -RRB- denotes )
T3778 216-222 NNP denotes LT-HSC
T3777 215-216 -LRB- denotes (
T3776 209-214 NNS denotes cells
T3775 204-208 NN denotes stem
T3774 190-203 NN denotes hematopoiesis
T3773 180-189 JJ denotes long-term
T3772 177-179 IN denotes in
T3771 165-176 VBN denotes upregulated
T3770 162-164 VBZ denotes is
T3769 157-161 NNP denotes Sox6
T3768 152-156 IN denotes that
T3767 146-151 VBN denotes shown
T3766 142-145 VBD denotes was
T3765 139-141 PRP denotes it
T3764 137-138 , denotes ,
T3763 136-137 NNP denotes ]
T3762 131-136 CD denotes 14,15
T3761 130-131 NNP denotes [
T3760 123-129 NN denotes muscle
T3759 119-122 CC denotes and
T3758 117-118 , denotes ,
T3757 116-117 NNP denotes ]
T3756 109-116 CD denotes 6,12,13
T3755 108-109 NNP denotes [
T3754 98-107 NN denotes cartilage
T3753 96-97 , denotes ,
T3752 95-96 NNP denotes ]
T3751 93-95 CD denotes 11
T3750 91-92 CD denotes 8
T3749 90-91 NN denotes [
T3748 83-89 NN denotes system
T3747 75-82 JJ denotes nervous
T3746 67-74 JJ denotes central
T3745 63-66 DT denotes the
T3744 60-62 IN denotes of
T3743 48-59 NN denotes development
T3742 44-47 DT denotes the
T3741 41-43 IN denotes in
T3740 36-40 NN denotes role
T3739 26-35 JJ denotes important
T3738 23-25 DT denotes an
T3737 15-22 VBG denotes playing
T3736 12-14 TO denotes to
T3735 3-11 NN denotes addition
T3734 0-2 IN denotes In
R2726 T3799 T3799 ROOT describe,describe
R2729 T3800 T3803 mark that,exerts
R2730 T3801 T3803 nsubj Sox6,exerts
R2732 T3802 T3803 advmod also,exerts
R2733 T3803 T3799 ccomp exerts,describe
R2735 T3804 T3805 amod pleiotropic,effects
R2736 T3805 T3803 dobj effects,exerts
R2738 T3806 T3805 prep on,effects
R2739 T3807 T3806 pobj erythropoiesis,on
R2740 T3808 T3799 punct .,describe
R2742 T3809 T3810 det These,effects
R2743 T3810 T3811 nsubj effects,include
R2745 T3811 T3811 ROOT include,include
R2746 T3812 T3813 amod delayed,maturation
R2747 T3813 T3811 dobj maturation,include
R2749 T3814 T3813 prep of,maturation
R2750 T3815 T3814 pobj erythrocytes,of
R2751 T3816 T3819 punct (,enucleate
R2753 T3817 T3819 nsubj that,enucleate
R2754 T3818 T3819 advmod normally,enucleate
R2756 T3819 T3813 appos enucleate,maturation
R2758 T3820 T3819 advmod prior,enucleate
R2760 T3821 T3820 prep to,prior
R2761 T3822 T3821 pcomp entering,to
R2762 T3823 T3824 det the,bloodstream
R2763 T3734 T3767 prep In,shown
R2764 T3824 T3822 dobj bloodstream,entering
R2765 T3825 T3827 nmod [,]
R2766 T3826 T3827 nummod 27,]
R2767 T3735 T3734 pobj addition,In
R2768 T3827 T3824 appos ],bloodstream
R2769 T3828 T3827 punct ),]
R2770 T3829 T3824 cc and,bloodstream
R2771 T3830 T3831 amod higher,expression
R2772 T3831 T3821 pobj expression,to
R2773 T3832 T3831 prep of,expression
R2774 T3736 T3735 prep to,addition
R2775 T3833 T3835 amod embryonic,genes
R2776 T3834 T3835 compound globin,genes
R2777 T3835 T3832 pobj genes,of
R2778 T3836 T3811 punct .,include
R2779 T3737 T3736 pcomp playing,to
R2780 T3837 T3840 det The,effect
R2781 T3838 T3839 advmod most,extreme
R2782 T3738 T3740 det an,role
R2783 T3839 T3840 amod extreme,effect
R2784 T3840 T3841 nsubj effect,is
R2785 T3841 T3841 ROOT is,is
R2786 T3739 T3740 amod important,role
R2787 T3842 T3843 det the,persistence
R2788 T3843 T3841 attr persistence,is
R2789 T3844 T3843 prep of,persistence
R2790 T3740 T3737 dobj role,playing
R2791 T3845 T3846 amod high,expression
R2792 T3846 T3844 pobj expression,of
R2793 T3847 T3846 prep of,expression
R2794 T3741 T3740 prep in,role
R2795 T3848 T3852 det the,gene
R2796 T3849 T3852 amod embryonic,gene
R2797 T3742 T3743 det the,development
R2798 T3850 T3852 compound ɛy,gene
R2799 T3851 T3852 compound globin,gene
R2800 T3852 T3847 pobj gene,of
R2801 T3743 T3741 pobj development,in
R2802 T3853 T3841 punct .,is
R2803 T3854 T3856 advmod Here,describe
R2804 T3855 T3856 nsubj we,describe
R2805 T3744 T3743 prep of,development
R2806 T3856 T3856 ROOT describe,describe
R2807 T3857 T3856 cc and,describe
R2808 T3745 T3748 det the,system
R2809 T3858 T3856 conj characterize,describe
R2810 T3859 T3860 det the,effects
R2811 T3860 T3858 dobj effects,characterize
R2812 T3746 T3748 amod central,system
R2813 T3861 T3860 prep of,effects
R2814 T3862 T3861 pobj Sox6,of
R2815 T3863 T3860 prep on,effects
R2816 T3747 T3748 amod nervous,system
R2817 T3864 T3867 det the,gene
R2818 T3865 T3867 amod ɛy,gene
R2819 T3866 T3867 compound globin,gene
R2820 T3867 T3863 pobj gene,on
R2821 T3868 T3856 punct .,describe
R2822 T3869 T3870 nsubj We,show
R2823 T3748 T3744 pobj system,of
R2824 T3870 T3870 ROOT show,show
R2825 T3871 T3882 mark that,represses
R2826 T3872 T3873 amod Sox6,binds
R2827 T3749 T3767 advcl [,shown
R2828 T3873 T3882 nsubj binds,represses
R2829 T3874 T3873 prep to,binds
R2830 T3875 T3877 det the,promoter
R2831 T3750 T3749 nummod 8,[
R2832 T3876 T3877 amod proximal,promoter
R2833 T3877 T3874 pobj promoter,to
R2834 T3878 T3877 prep of,promoter
R2835 T3751 T3752 nummod 11,]
R2836 T3879 T3880 amod ɛy,globin
R2837 T3880 T3878 pobj globin,of
R2838 T3881 T3877 cc and,promoter
R2839 T3752 T3749 appos ],[
R2840 T3882 T3870 ccomp represses,show
R2841 T3883 T3884 poss its,transcription
R2842 T3884 T3882 dobj transcription,represses
R2843 T3753 T3752 punct ",",]
R2844 T3885 T3870 punct .,show
R2845 T3886 T3896 prep In,expressed
R2846 T3754 T3757 compound cartilage,]
R2847 T3887 T3891 nmod wild-type,mice
R2848 T3888 T3889 punct (,WT
R2849 T3889 T3887 appos WT,wild-type
R2850 T3755 T3757 compound [,]
R2851 T3890 T3889 punct ),WT
R2852 T3891 T3886 pobj mice,In
R2853 T3892 T3896 punct ",",expressed
R2854 T3756 T3757 compound "6,12,13",]
R2855 T3893 T3896 nsubjpass Sox6,expressed
R2856 T3894 T3896 auxpass is,expressed
R2857 T3895 T3896 neg not,expressed
R2858 T3757 T3749 conj ],[
R2859 T3758 T3757 punct ",",]
R2860 T3896 T3896 ROOT expressed,expressed
R2861 T3759 T3757 cc and,]
R2862 T3897 T3896 prep in,expressed
R2863 T3898 T3901 compound yolk,islands
R2864 T3760 T3763 compound muscle,]
R2865 T3761 T3763 compound [,]
R2866 T3899 T3901 compound sac,islands
R2867 T3900 T3901 compound blood,islands
R2868 T3762 T3763 compound "14,15",]
R2869 T3901 T3897 pobj islands,in
R2870 T3902 T3896 punct ",",expressed
R2871 T3903 T3896 cc but,expressed
R2872 T3904 T3905 auxpass is,expressed
R2873 T3905 T3896 conj expressed,expressed
R2874 T3906 T3905 prep in,expressed
R2875 T3763 T3757 conj ],]
R2876 T3907 T3908 amod fetal,liver
R2877 T3908 T3906 pobj liver,in
R2878 T3764 T3767 punct ",",shown
R2879 T3909 T3905 punct ",",expressed
R2880 T3910 T3913 det the,pattern
R2881 T3765 T3767 nsubjpass it,shown
R2882 T3911 T3913 amod opposite,pattern
R2883 T3912 T3913 compound expression,pattern
R2884 T3913 T3905 conj pattern,expressed
R2885 T3766 T3767 auxpass was,shown
R2886 T3914 T3913 prep of,pattern
R2887 T3915 T3916 amod ɛy,globin
R2888 T3767 T3767 ROOT shown,shown
R2889 T3916 T3914 pobj globin,of
R2890 T3917 T3896 punct .,expressed
R2891 T3918 T3928 prep In,expressed
R2892 T3768 T3770 mark that,is
R2893 T3919 T3920 det the,absence
R2894 T3920 T3918 pobj absence,In
R2895 T3921 T3920 prep of,absence
R2896 T3769 T3770 nsubj Sox6,is
R2897 T3922 T3921 pobj Sox6,of
R2898 T3923 T3928 punct ",",expressed
R2899 T3924 T3925 amod ɛy,globin
R2900 T3770 T3767 ccomp is,shown
R2901 T3925 T3928 nsubjpass globin,expressed
R2902 T3926 T3928 auxpass is,expressed
R2903 T3771 T3770 acomp upregulated,is
R2904 T3927 T3928 advmod ectopically,expressed
R2905 T3928 T3928 ROOT expressed,expressed
R2906 T3929 T3928 prep in,expressed
R2907 T3772 T3771 prep in,upregulated
R2908 T3930 T3932 det the,liver
R2909 T3931 T3932 amod fetal,liver
R2910 T3932 T3929 pobj liver,in
R2911 T3773 T3776 amod long-term,cells
R2912 T3933 T3928 punct ",",expressed
R2913 T3934 T3928 advcl demonstrating,expressed
R2914 T3935 T3934 dobj that,demonstrating
R2915 T3774 T3776 compound hematopoiesis,cells
R2916 T3936 T3937 amod Sox6,functions
R2917 T3937 T3935 nsubj functions,that
R2918 T3775 T3776 compound stem,cells
R2919 T3938 T3937 prep in,functions
R2920 T3939 T3940 amod definitive,erythropoiesis
R2921 T3940 T3938 pobj erythropoiesis,in
R2922 T3941 T3928 punct .,expressed
R2923 T3776 T3772 pobj cells,in
R2924 T3777 T3778 punct (,LT-HSC
R2925 T3778 T3771 appos LT-HSC,upregulated
R2926 T3779 T3771 punct ),upregulated
R2927 T3780 T3771 prep compared,upregulated
R2928 T3781 T3780 prep with,compared
R2929 T3782 T3783 amod multipotent,progenitors
R2933 T3783 T3781 pobj progenitors,with
R2934 T3784 T3783 prep of,progenitors
R2938 T3785 T3788 compound adult,marrow
R2939 T3786 T3788 compound mouse,marrow
R2940 T3787 T3788 compound bone,marrow
R2941 T3788 T3789 compound marrow,lineage
R2943 T3789 T3784 pobj lineage,of
R2944 T3790 T3792 nmod [,]
R2945 T3791 T3792 nummod 28,]
R2946 T3792 T3783 appos ],progenitors
R2948 T3793 T3767 punct .,shown
R2952 T3794 T3799 prep In,describe
R2953 T3795 T3796 det this,study
R2954 T3796 T3794 pobj study,In
R2956 T3797 T3799 punct ",",describe
R2957 T3798 T3799 nsubj we,describe

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1587 988-995 Negative_regulation denotes absence
T1586 1079-1083 Protein denotes Sox6
T1585 1005-1014 Protein denotes ɛy globin
T1584 999-1003 Protein denotes Sox6
T1583 948-958 Gene_expression denotes expression
T1582 909-918 Gene_expression denotes expressed
T1581 909-918 Gene_expression denotes expressed
T1580 865-874 Gene_expression denotes expressed
T1579 970-979 Protein denotes ɛy globin
T1578 853-857 Protein denotes Sox6
T1577 800-809 Negative_regulation denotes represses
T1576 752-757 Binding denotes binds
T1575 752-757 Binding denotes binds
T1574 814-827 Transcription denotes transcription
T1573 774-782 Entity denotes promoter
T1572 786-795 Protein denotes ɛy globin
T1571 747-751 Protein denotes Sox6
T1570 695-702 Regulation denotes effects
T1569 718-732 Protein denotes ɛy globin gene
T1568 706-710 Protein denotes Sox6
T1567 613-623 Gene_expression denotes expression
T1566 644-655 Protein denotes globin gene
T1565 524-534 Gene_expression denotes expression
T1564 548-560 Protein denotes globin genes
T1563 335-339 Protein denotes Sox6
T1562 165-176 Positive_regulation denotes upregulated
T1561 157-161 Protein denotes Sox6
R781 T1561 T1562 themeOf Sox6,upregulated
R782 T1564 T1565 themeOf globin genes,expression
R783 T1566 T1567 themeOf globin gene,expression
R784 T1568 T1570 causeOf Sox6,effects
R785 T1569 T1570 themeOf ɛy globin gene,effects
R786 T1571 T1575 themeOf Sox6,binds
R787 T1571 T1576 themeOf Sox6,binds
R788 T1571 T1577 causeOf Sox6,represses
R789 T1572 T1574 themeOf ɛy globin,transcription
R790 T1572 T1576 themeOf ɛy globin,binds
R791 T1572 T1573 partOf ɛy globin,promoter
R792 T1573 T1575 Site promoter,binds
R793 T1573 T1576 Site promoter,binds
R794 T1574 T1577 themeOf transcription,represses
R795 T1578 T1580 themeOf Sox6,expressed
R796 T1578 T1581 themeOf Sox6,expressed
R797 T1579 T1582 themeOf ɛy globin,expressed
R798 T1579 T1583 themeOf ɛy globin,expression
R799 T1585 T1587 themeOf ɛy globin,absence

testone

Id Subject Object Predicate Lexical cue
T1065 1030-1039 Gene_expression denotes expressed
T1064 988-995 Negative_regulation denotes absence
T1063 948-958 Gene_expression denotes expression
T1062 909-918 Gene_expression denotes expressed
T1061 865-874 Gene_expression denotes expressed
T1060 800-809 Negative_regulation denotes represses
T1059 774-782 Entity denotes promoter
T1058 765-773 Entity denotes proximal
T1057 752-757 Binding denotes binds
T1056 695-702 Regulation denotes effects
T1055 613-623 Gene_expression denotes expression
T1054 165-176 Positive_regulation denotes upregulated
T1031 1079-1083 Protein denotes Sox6
T1030 1005-1014 Protein denotes ɛy globin
T1029 999-1003 Protein denotes Sox6
T1028 970-979 Protein denotes ɛy globin
T1027 853-857 Protein denotes Sox6
T1026 786-795 Protein denotes ɛy globin
T1025 747-751 Protein denotes Sox6
T1024 718-727 Protein denotes ɛy globin
T1023 706-710 Protein denotes Sox6
T1022 641-650 Protein denotes ɛy globin
T1021 335-339 Protein denotes Sox6
T1020 157-161 Protein denotes Sox6
R621 T1020 T1054 themeOf Sox6,upregulated
R622 T1022 T1055 themeOf ɛy globin,expression
R623 T1024 T1056 themeOf ɛy globin,effects
R624 T1025 T1057 themeOf Sox6,binds
R625 T1026 T1057 themeOf ɛy globin,binds
R626 T1027 T1062 themeOf Sox6,expressed
R627 T1027 T1063 themeOf Sox6,expression
R628 T1027 T1061 themeOf Sox6,expressed
R629 T1028 T1063 themeOf ɛy globin,expression
R630 T1029 T1064 themeOf Sox6,absence
R631 T1029 T1065 themeOf Sox6,expressed
R632 T1030 T1065 themeOf ɛy globin,expressed
R633 T1030 T1064 themeOf ɛy globin,absence
R637 T1057 T1060 causeOf binds,represses
R638 T1059 T1057 themeOf promoter,binds

test3

Id Subject Object Predicate Lexical cue
T1195 1079-1083 Protein denotes Sox6
T1119 1079-1083 Protein denotes Sox6
T1118 1005-1014 Protein denotes ɛy globin
T1117 999-1003 Protein denotes Sox6
T1116 970-979 Protein denotes ɛy globin
T1115 853-857 Protein denotes Sox6
T1114 786-795 Protein denotes ɛy globin
T1113 747-751 Protein denotes Sox6
T1112 718-727 Protein denotes ɛy globin
T1111 706-710 Protein denotes Sox6
T1110 641-650 Protein denotes ɛy globin
T1109 335-339 Protein denotes Sox6
T1108 157-161 Protein denotes Sox6
T1194 1030-1039 Gene_expression denotes expressed
T1193 1005-1014 Protein denotes ɛy globin
T1192 999-1003 Protein denotes Sox6
T1191 970-979 Protein denotes ɛy globin
T1190 853-857 Protein denotes Sox6
T1189 786-795 Protein denotes ɛy globin
T1188 774-782 Entity denotes promoter
T1187 765-773 Entity denotes proximal
T1186 752-757 Binding denotes binds
T1185 747-751 Protein denotes Sox6
T1184 718-727 Protein denotes ɛy globin
T1183 706-710 Protein denotes Sox6
T1182 641-650 Protein denotes ɛy globin
T1181 335-339 Protein denotes Sox6
T1180 157-161 Protein denotes Sox6
R668 T1185 T1186 themeOf Sox6,binds
R669 T1188 T1186 themeOf promoter,binds
R670 T1192 T1194 themeOf Sox6,expressed
R671 T1193 T1194 themeOf ɛy globin,expressed
R672 T1193 T1195 themeOf ɛy globin,Sox6