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PMC:1359074 / 7331-7633 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-7567444-85760982 91-92 7567444 denotes 8
16462943-14988021-85760982 91-92 14988021 denotes 8
16462943-15527762-85760982 91-92 15527762 denotes 8
16462943-15846364-85760982 91-92 15846364 denotes 8
16462943-9755172-85760983 109-110 9755172 denotes 6
16462943-11702786-85760984 114-116 11702786 denotes 13
16462943-10760285-85760985 131-133 10760285 denotes 14
16462943-14530442-85760986 134-136 14530442 denotes 15
T11140 91-92 7567444 denotes 8
T59872 91-92 14988021 denotes 8
T36493 91-92 15527762 denotes 8
T10217 91-92 15846364 denotes 8
T1755 109-110 9755172 denotes 6
T16819 114-116 11702786 denotes 13
T38852 131-133 10760285 denotes 14
T5543 134-136 14530442 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2542 300-301 -RRB- denotes ]
T2541 298-300 CD denotes 28
T2540 297-298 -LRB- denotes [
T2539 289-296 NN denotes lineage
T2538 282-288 NN denotes marrow
T2537 277-281 NN denotes bone
T2536 271-276 NN denotes mouse
T2535 265-270 JJ denotes adult
T2534 262-264 IN denotes of
T2533 250-261 NN denotes progenitors
T2532 238-249 JJ denotes multipotent
T2531 233-237 IN denotes with
T2530 224-232 VB denotes compared
T2529 222-223 -RRB- denotes )
T2528 216-222 NN denotes LT-HSC
T2527 215-216 -LRB- denotes (
T2526 209-214 NN denotes cells
T2525 204-208 NN denotes stem
T2524 190-203 NN denotes hematopoiesis
T2523 180-189 JJ denotes long-term
T2522 177-179 IN denotes in
T2521 165-176 VB denotes upregulated
T2520 162-164 VB denotes is
T2519 157-161 NN denotes Sox6
T2518 152-156 IN denotes that
T2517 146-151 VB denotes shown
T2516 142-145 VB denotes was
T2515 139-141 PRP denotes it
T2514 137-138 -COMMA- denotes ,
T2513 136-137 -RRB- denotes ]
T2512 131-136 CD denotes 14,15
T2511 130-131 -LRB- denotes [
T2510 123-129 NN denotes muscle
T2509 119-122 CC denotes and
T2508 117-118 -COMMA- denotes ,
T2507 116-117 -RRB- denotes ]
T2506 109-116 CD denotes 6,12,13
T2505 108-109 -LRB- denotes [
T2504 98-107 NN denotes cartilage
T2503 96-97 -COMMA- denotes ,
T2502 95-96 -RRB- denotes ]
T2501 91-95 CD denotes 8–11
T2500 90-91 -LRB- denotes [
T2499 83-89 NN denotes system
T2498 75-82 JJ denotes nervous
T2497 67-74 JJ denotes central
T2496 63-66 DT denotes the
T2495 60-62 IN denotes of
T2494 48-59 NN denotes development
T2493 44-47 DT denotes the
T2492 41-43 IN denotes in
T2491 36-40 NN denotes role
T2490 26-35 JJ denotes important
T2489 23-25 DT denotes an
T2488 15-22 VB denotes playing
T2487 12-14 TO denotes to
T2486 3-11 NN denotes addition
T2485 0-2 IN denotes In
R1624 T2486 T2487 arg1Of addition,to
R1626 T2486 T2503 arg1Of addition,","
R1628 T2488 T2487 arg2Of playing,to
R1629 T2488 T2492 arg1Of playing,in
R1631 T2491 T2488 arg2Of role,playing
R1632 T2491 T2489 arg1Of role,an
R1633 T2491 T2490 arg1Of role,important
R1635 T2494 T2492 arg2Of development,in
R1636 T2494 T2493 arg1Of development,the
R1637 T2494 T2495 arg1Of development,of
R1640 T2499 T2495 arg2Of system,of
R1641 T2499 T2496 arg1Of system,the
R1642 T2499 T2497 arg1Of system,central
R1643 T2499 T2498 arg1Of system,nervous
R1644 T2499 T2500 arg1Of system,[
R1645 T2501 T2500 arg2Of 8–11,[
R1647 T2502 T2500 arg3Of ],[
R1648 T2503 T2509 arg1Of ",",and
R1649 T2504 T2503 arg2Of cartilage,","
R1650 T2504 T2505 arg1Of cartilage,[
R1652 T2506 T2505 arg2Of "6,12,13",[
R1653 T2507 T2505 arg3Of ],[
R1656 T2509 T2485 arg2Of and,In
R1657 T2509 T2508 arg1Of and,","
R1658 T2510 T2509 arg2Of muscle,and
R1659 T2510 T2511 arg1Of muscle,[
R1660 T2512 T2511 arg2Of "14,15",[
R1661 T2513 T2511 arg3Of ],[
R1662 T2515 T2516 arg1Of it,was
R1663 T2515 T2517 arg2Of it,shown
R1665 T2517 T2485 arg1Of shown,In
R1666 T2517 T2514 arg1Of shown,","
R1667 T2517 T2516 arg2Of shown,was
R1668 T2519 T2520 arg1Of Sox6,is
R1669 T2519 T2521 arg2Of Sox6,upregulated
R1671 T2521 T2517 arg3Of upregulated,shown
R1672 T2521 T2518 arg1Of upregulated,that
R1673 T2521 T2520 arg2Of upregulated,is
R1674 T2521 T2522 arg1Of upregulated,in
R1675 T2521 T2530 arg1Of upregulated,compared
R1676 T2521 T2540 arg1Of upregulated,[
R1678 T2526 T2522 arg2Of cells,in
R1679 T2526 T2523 arg1Of cells,long-term
R1680 T2526 T2524 arg1Of cells,hematopoiesis
R1681 T2526 T2525 arg1Of cells,stem
R1682 T2526 T2527 arg1Of cells,(
R1683 T2528 T2527 arg2Of LT-HSC,(
R1685 T2529 T2527 arg3Of ),(
R1686 T2531 T2530 arg2Of with,compared
R1689 T2533 T2531 arg2Of progenitors,with
R1690 T2533 T2532 arg1Of progenitors,multipotent
R1691 T2533 T2534 arg1Of progenitors,of
R1693 T2539 T2534 arg2Of lineage,of
R1694 T2539 T2535 arg1Of lineage,adult
R1695 T2539 T2536 arg1Of lineage,mouse
R1696 T2539 T2537 arg1Of lineage,bone
R1697 T2539 T2538 arg1Of lineage,marrow
R1699 T2541 T2540 arg2Of 28,[
R1700 T2542 T2540 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1457 157-161 Protein denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T1289 190-203 http://purl.obolibrary.org/obo/GO_0030097 denotes hematopoiesis
T1261 48-89 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system
T1259 48-89 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T1257 48-59 http://purl.obolibrary.org/obo/GO_0032502 denotes development

GO-CC

Id Subject Object Predicate Lexical cue
T1499 219-222 http://purl.obolibrary.org/obo/GO_0035301 denotes HSC
T1493 209-214 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T1227 0-302 Sentence denotes In addition to playing an important role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15], it was shown that Sox6 is upregulated in long-term hematopoiesis stem cells (LT-HSC) compared with multipotent progenitors of adult mouse bone marrow lineage [28].
T47 0-302 Sentence denotes In addition to playing an important role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15], it was shown that Sox6 is upregulated in long-term hematopoiesis stem cells (LT-HSC) compared with multipotent progenitors of adult mouse bone marrow lineage [28].

ICD10

Id Subject Object Predicate Lexical cue
T1484 75-82 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T1684 157-161 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4292 165-176 Positive_regulation denotes upregulated
T4262 157-161 Protein denotes Sox6
R3048 T4262 T4292 themeOf Sox6,upregulated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2754 165-176 Positive_regulation denotes upregulated
T2726 157-161 Protein denotes Sox6
R1828 T2726 T2754 themeOf Sox6,upregulated

DLUT931

Id Subject Object Predicate Lexical cue
T2834 165-176 Positive_regulation denotes upregulated
T2804 157-161 Protein denotes Sox6
R1885 T2804 T2834 themeOf Sox6,upregulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4090 216-222 Entity denotes LT-HSC
T4087 146-161 Protein denotes shown that Sox6
T4195 146-176 Positive_regulation denotes shown that Sox6 is upregulated
T4179 180-223 Entity denotes long-term hematopoiesis stem cells (LT-HSC)
R3010 T4087 T4195 themeOf shown that Sox6,shown that Sox6 is upregulated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3793 301-302 . denotes .
T3792 300-301 NNP denotes ]
T3791 298-300 CD denotes 28
T3790 297-298 NNP denotes [
T3789 289-296 NN denotes lineage
T3788 282-288 NN denotes marrow
T3787 277-281 NN denotes bone
T3786 271-276 NN denotes mouse
T3785 265-270 NN denotes adult
T3784 262-264 IN denotes of
T3783 250-261 NNS denotes progenitors
T3782 238-249 JJ denotes multipotent
T3781 233-237 IN denotes with
T3780 224-232 VBN denotes compared
T3779 222-223 -RRB- denotes )
T3778 216-222 NNP denotes LT-HSC
T3777 215-216 -LRB- denotes (
T3776 209-214 NNS denotes cells
T3775 204-208 NN denotes stem
T3774 190-203 NN denotes hematopoiesis
T3773 180-189 JJ denotes long-term
T3772 177-179 IN denotes in
T3771 165-176 VBN denotes upregulated
T3770 162-164 VBZ denotes is
T3769 157-161 NNP denotes Sox6
T3768 152-156 IN denotes that
T3767 146-151 VBN denotes shown
T3766 142-145 VBD denotes was
T3765 139-141 PRP denotes it
T3764 137-138 , denotes ,
T3763 136-137 NNP denotes ]
T3762 131-136 CD denotes 14,15
T3761 130-131 NNP denotes [
T3760 123-129 NN denotes muscle
T3759 119-122 CC denotes and
T3758 117-118 , denotes ,
T3757 116-117 NNP denotes ]
T3756 109-116 CD denotes 6,12,13
T3755 108-109 NNP denotes [
T3754 98-107 NN denotes cartilage
T3753 96-97 , denotes ,
T3752 95-96 NNP denotes ]
T3751 93-95 CD denotes 11
T3750 91-92 CD denotes 8
T3749 90-91 NN denotes [
T3748 83-89 NN denotes system
T3747 75-82 JJ denotes nervous
T3746 67-74 JJ denotes central
T3745 63-66 DT denotes the
T3744 60-62 IN denotes of
T3743 48-59 NN denotes development
T3742 44-47 DT denotes the
T3741 41-43 IN denotes in
T3740 36-40 NN denotes role
T3739 26-35 JJ denotes important
T3738 23-25 DT denotes an
T3737 15-22 VBG denotes playing
T3736 12-14 TO denotes to
T3735 3-11 NN denotes addition
T3734 0-2 IN denotes In
R2763 T3734 T3767 prep In,shown
R2767 T3735 T3734 pobj addition,In
R2774 T3736 T3735 prep to,addition
R2779 T3737 T3736 pcomp playing,to
R2782 T3738 T3740 det an,role
R2786 T3739 T3740 amod important,role
R2790 T3740 T3737 dobj role,playing
R2794 T3741 T3740 prep in,role
R2797 T3742 T3743 det the,development
R2801 T3743 T3741 pobj development,in
R2805 T3744 T3743 prep of,development
R2808 T3745 T3748 det the,system
R2812 T3746 T3748 amod central,system
R2816 T3747 T3748 amod nervous,system
R2823 T3748 T3744 pobj system,of
R2827 T3749 T3767 advcl [,shown
R2831 T3750 T3749 nummod 8,[
R2835 T3751 T3752 nummod 11,]
R2839 T3752 T3749 appos ],[
R2843 T3753 T3752 punct ",",]
R2846 T3754 T3757 compound cartilage,]
R2850 T3755 T3757 compound [,]
R2854 T3756 T3757 compound "6,12,13",]
R2858 T3757 T3749 conj ],[
R2859 T3758 T3757 punct ",",]
R2861 T3759 T3757 cc and,]
R2864 T3760 T3763 compound muscle,]
R2865 T3761 T3763 compound [,]
R2868 T3762 T3763 compound "14,15",]
R2875 T3763 T3757 conj ],]
R2878 T3764 T3767 punct ",",shown
R2881 T3765 T3767 nsubjpass it,shown
R2885 T3766 T3767 auxpass was,shown
R2888 T3767 T3767 ROOT shown,shown
R2892 T3768 T3770 mark that,is
R2896 T3769 T3770 nsubj Sox6,is
R2900 T3770 T3767 ccomp is,shown
R2903 T3771 T3770 acomp upregulated,is
R2907 T3772 T3771 prep in,upregulated
R2911 T3773 T3776 amod long-term,cells
R2915 T3774 T3776 compound hematopoiesis,cells
R2918 T3775 T3776 compound stem,cells
R2923 T3776 T3772 pobj cells,in
R2924 T3777 T3778 punct (,LT-HSC
R2925 T3778 T3771 appos LT-HSC,upregulated
R2926 T3779 T3771 punct ),upregulated
R2927 T3780 T3771 prep compared,upregulated
R2928 T3781 T3780 prep with,compared
R2929 T3782 T3783 amod multipotent,progenitors
R2933 T3783 T3781 pobj progenitors,with
R2934 T3784 T3783 prep of,progenitors
R2938 T3785 T3788 compound adult,marrow
R2939 T3786 T3788 compound mouse,marrow
R2940 T3787 T3788 compound bone,marrow
R2941 T3788 T3789 compound marrow,lineage
R2943 T3789 T3784 pobj lineage,of
R2944 T3790 T3792 nmod [,]
R2945 T3791 T3792 nummod 28,]
R2946 T3792 T3783 appos ],progenitors
R2948 T3793 T3767 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1562 165-176 Positive_regulation denotes upregulated
T1561 157-161 Protein denotes Sox6
R781 T1561 T1562 themeOf Sox6,upregulated

testone

Id Subject Object Predicate Lexical cue
T1054 165-176 Positive_regulation denotes upregulated
T1020 157-161 Protein denotes Sox6
R621 T1020 T1054 themeOf Sox6,upregulated

test3

Id Subject Object Predicate Lexical cue
T1108 157-161 Protein denotes Sox6
T1180 157-161 Protein denotes Sox6