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PMC:1359074 / 721-998 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T405 268-271 DT denotes the
T404 264-267 CC denotes and
T403 258-263 NN denotes liver
T402 252-257 JJ denotes fetal
T401 242-251 JJ denotes wild-type
T400 239-241 IN denotes in
T399 234-238 NN denotes Sox6
T398 231-233 IN denotes of
T397 220-230 NN denotes expression
T396 213-219 JJ denotes normal
T395 209-212 DT denotes The
T394 199-207 NN denotes promoter
T393 196-198 JJ denotes ɛy
T392 192-195 DT denotes the
T391 189-191 TO denotes to
T390 181-188 VB denotes binding
T389 172-180 RB denotes directly
T388 169-171 IN denotes by
T387 159-168 NN denotes repressor
T386 157-158 DT denotes a
T385 154-156 IN denotes as
T384 149-153 VB denotes acts
T383 144-148 NN denotes Sox6
T382 139-143 IN denotes that
T381 127-138 VB denotes demonstrate
T380 120-126 NN denotes assays
T379 118-119 -RRB- denotes )
T378 114-118 NN denotes ChIP
T377 113-114 -LRB- denotes (
T376 93-112 NN denotes immunoprecipitation
T375 83-92 NN denotes chromatin
T374 79-82 CC denotes and
T373 77-78 -RRB- denotes )
T372 73-77 NN denotes EMSA
T371 72-73 -LRB- denotes (
T370 66-71 NN denotes assay
T369 60-65 NN denotes shift
T368 51-59 NN denotes mobility
T367 35-50 JJ denotes Electrophoretic
T366 23-33 NN denotes repression
T365 14-22 VB denotes mediated
T364 9-13 NN denotes Sox6
T363 5-8 IN denotes for
R157 T366 T363 arg2Of repression,for
R158 T366 T364 arg1Of repression,Sox6
R159 T366 T365 arg2Of repression,mediated
R160 T370 T367 arg1Of assay,Electrophoretic
R161 T370 T368 arg1Of assay,mobility
R162 T370 T369 arg1Of assay,shift
R163 T370 T371 arg1Of assay,(
R164 T370 T374 arg1Of assay,and
R165 T372 T371 arg2Of EMSA,(
R166 T373 T371 arg3Of ),(
R167 T374 T381 arg1Of and,demonstrate
R168 T378 T377 arg2Of ChIP,(
R169 T379 T377 arg3Of ),(
R170 T380 T374 arg2Of assays,and
R171 T380 T375 arg1Of assays,chromatin
R172 T380 T376 arg1Of assays,immunoprecipitation
R173 T380 T377 arg1Of assays,(
R174 T383 T384 arg1Of Sox6,acts
R175 T384 T381 arg2Of acts,demonstrate
R176 T384 T382 arg1Of acts,that
R177 T384 T385 arg1Of acts,as
R178 T384 T388 arg1Of acts,by
R179 T387 T385 arg2Of repressor,as
R180 T387 T386 arg1Of repressor,a
R181 T390 T388 arg2Of binding,by
R182 T390 T389 arg1Of binding,directly
R183 T390 T391 arg1Of binding,to
R184 T394 T391 arg2Of promoter,to
R185 T394 T392 arg1Of promoter,the
R186 T394 T393 arg1Of promoter,ɛy
R187 T397 T395 arg1Of expression,The
R188 T397 T396 arg1Of expression,normal
R189 T397 T398 arg1Of expression,of
R190 T397 T400 arg1Of expression,in
R191 T397 T404 arg1Of expression,and
R192 T399 T398 arg2Of Sox6,of
R193 T403 T400 arg2Of liver,in
R194 T403 T401 arg1Of liver,wild-type
R195 T403 T402 arg1Of liver,fetal

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T154 9-13 Protein denotes Sox6
T155 144-148 Protein denotes Sox6
T156 196-198 Protein denotes ɛy
T157 234-238 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T477 9-13 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T478 144-148 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T479 234-238 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T90 258-263 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-MF

Id Subject Object Predicate Lexical cue
T172 181-188 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T178 83-92 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T96 35-208 Sentence denotes Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts as a repressor by directly binding to the ɛy promoter.
T8 35-208 Sentence denotes Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts as a repressor by directly binding to the ɛy promoter.

simple1

Id Subject Object Predicate Lexical cue
T242 234-238 Protein denotes Sox6
T241 196-198 Protein denotes ɛy
T240 144-148 Protein denotes Sox6
T239 9-13 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T884 9-13 Protein denotes Sox6
T885 144-148 Protein denotes Sox6
T886 196-198 Protein denotes ɛy
T887 234-238 Protein denotes Sox6
T898 23-33 Negative_regulation denotes repression
T899 181-188 Binding denotes binding
T901 220-230 Gene_expression denotes expression
R589 T885 T899 themeOf Sox6,binding
R591 T887 T901 themeOf Sox6,expression
R588 T884 T898 themeOf Sox6,repression
R590 T886 T899 themeOf ɛy,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T492 9-13 Protein denotes Sox6
T493 144-148 Protein denotes Sox6
T494 196-198 Protein denotes ɛy
T495 234-238 Protein denotes Sox6
T507 14-22 Positive_regulation denotes mediated
T508 23-33 Negative_regulation denotes repression
T509 181-188 Binding denotes binding
T511 220-230 Gene_expression denotes expression
R449 T492 T508 themeOf Sox6,repression
R450 T493 T509 themeOf Sox6,binding
R451 T494 T509 themeOf ɛy,binding
R452 T495 T511 themeOf Sox6,expression
R459 T508 T507 themeOf repression,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T539 220-230 Gene_expression denotes expression
T523 9-13 Protein denotes Sox6
T524 144-148 Protein denotes Sox6
T525 196-198 Protein denotes ɛy
T526 234-238 Protein denotes Sox6
T538 181-188 Binding denotes binding
R465 T524 T538 themeOf Sox6,binding
R466 T525 T538 themeOf ɛy,binding
R467 T526 T539 themeOf Sox6,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T873 5-33 Regulation denotes for Sox6 mediated repression
T867 172-207 Binding denotes directly binding to the ɛy promoter
T840 189-207 Entity denotes to the ɛy promoter
T852 231-238 Protein denotes of Sox6
T855 83-92 Entity denotes chromatin
T858 196-198 Protein denotes ɛy
T861 5-33 Protein denotes for Sox6 mediated repression
T862 144-148 Protein denotes Sox6
R573 T840 T858 partOf to the ɛy promoter,ɛy
R574 T840 T867 themeOf to the ɛy promoter,directly binding to the ɛy promoter
R584 T861 T873 themeOf for Sox6 mediated repression,for Sox6 mediated repression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T719 189-191 TO denotes to
T718 181-188 JJ denotes binding
T717 172-180 RB denotes directly
T716 169-171 IN denotes by
T715 159-168 NN denotes repressor
T714 157-158 DT denotes a
T713 154-156 IN denotes as
T712 149-153 NNS denotes acts
T711 144-148 JJ denotes Sox6
T710 139-143 IN denotes that
T709 127-138 VBP denotes demonstrate
T708 120-126 NNS denotes assays
T707 118-119 -RRB- denotes )
T706 114-118 NNP denotes ChIP
T705 113-114 -LRB- denotes (
T704 93-112 NN denotes immunoprecipitation
T703 83-92 NN denotes chromatin
T702 79-82 CC denotes and
T701 77-78 -RRB- denotes )
T700 73-77 NNP denotes EMSA
T699 72-73 -LRB- denotes (
T698 66-71 NN denotes assay
T697 60-65 NN denotes shift
T696 51-59 NN denotes mobility
T695 35-50 JJ denotes Electrophoretic
T694 33-34 . denotes .
T693 23-33 NN denotes repression
T692 14-22 VBN denotes mediated
T691 9-13 JJ denotes Sox6
T690 5-8 IN denotes for
T720 192-195 DT denotes the
T721 196-198 JJ denotes ɛy
T722 199-207 NN denotes promoter
T723 207-208 . denotes .
T724 209-212 DT denotes The
T725 213-219 JJ denotes normal
T726 220-230 NN denotes expression
T727 231-233 IN denotes of
T728 234-238 NNP denotes Sox6
T729 239-241 IN denotes in
T730 242-251 JJ denotes wild-type
T731 252-257 JJ denotes fetal
T732 258-263 NN denotes liver
T733 264-267 CC denotes and
T734 268-271 DT denotes the
R387 T691 T693 amod Sox6,repression
R388 T692 T693 amod mediated,repression
R389 T693 T690 pobj repression,for
R391 T695 T698 amod Electrophoretic,assay
R392 T696 T698 compound mobility,assay
R393 T697 T698 compound shift,assay
R394 T698 T708 nmod assay,assays
R395 T699 T700 punct (,EMSA
R396 T700 T698 appos EMSA,assay
R397 T701 T700 punct ),EMSA
R398 T702 T698 cc and,assay
R399 T703 T704 compound chromatin,immunoprecipitation
R400 T704 T698 conj immunoprecipitation,assay
R401 T705 T704 punct (,immunoprecipitation
R402 T706 T704 appos ChIP,immunoprecipitation
R403 T707 T704 punct ),immunoprecipitation
R404 T708 T709 nsubj assays,demonstrate
R405 T709 T709 ROOT demonstrate,demonstrate
R406 T710 T718 mark that,binding
R407 T711 T712 amod Sox6,acts
R408 T712 T718 nsubj acts,binding
R409 T713 T712 prep as,acts
R410 T714 T715 det a,repressor
R411 T715 T713 pobj repressor,as
R412 T716 T712 prep by,acts
R413 T717 T718 advmod directly,binding
R414 T718 T709 ccomp binding,demonstrate
R415 T719 T718 prep to,binding
R488 T720 T722 det the,promoter
R489 T721 T722 amod ɛy,promoter
R490 T722 T719 pobj promoter,to
R491 T723 T709 punct .,demonstrate
R492 T724 T726 det The,expression
R493 T725 T726 amod normal,expression
R495 T727 T726 prep of,expression
R496 T728 T727 pobj Sox6,of
R497 T729 T726 prep in,expression
R498 T730 T732 amod wild-type,liver
R499 T731 T732 amod fetal,liver
R500 T732 T729 pobj liver,in
R501 T733 T732 cc and,liver

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T222 220-230 Gene_expression denotes expression
T219 234-238 Protein denotes Sox6
T218 181-188 Binding denotes binding
T217 199-207 Entity denotes promoter
T216 144-148 Protein denotes Sox6
T215 9-13 Protein denotes Sox6
R36 T216 T218 themeOf Sox6,binding
R37 T217 T218 Site promoter,binding
R38 T219 T222 themeOf Sox6,expression

testone

Id Subject Object Predicate Lexical cue
T28 9-13 Protein denotes Sox6
T29 144-148 Protein denotes Sox6
T30 196-198 Protein denotes ɛy
T31 234-238 Protein denotes Sox6
T42 181-188 Binding denotes binding
T43 199-207 Entity denotes promoter
R7 T43 T30 partOf promoter,ɛy
R8 T43 T42 themeOf promoter,binding
R4 T29 T42 themeOf Sox6,binding

test3

Id Subject Object Predicate Lexical cue
T53 9-13 Protein denotes Sox6
T54 144-148 Protein denotes Sox6
T55 196-198 Protein denotes ɛy
T56 234-238 Protein denotes Sox6
T74 9-13 Protein denotes Sox6
T75 144-148 Protein denotes Sox6
T76 181-188 Binding denotes binding
T77 196-198 Protein denotes ɛy
T78 234-238 Protein denotes Sox6
R14 T75 T76 themeOf Sox6,binding
R15 T77 T76 themeOf ɛy,binding