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PMC:1359074 / 65-390 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T305 312-323 NN denotes development
T304 308-311 DT denotes the
T303 305-307 IN denotes in
T302 300-304 NN denotes role
T301 298-299 DT denotes a
T300 292-297 VB denotes plays
T299 287-291 NN denotes Sox6
T298 282-286 IN denotes that
T297 272-281 VB denotes suggested
T296 267-271 VB denotes have
T295 259-266 NN denotes studies
T294 250-258 NNP denotes Previous
T293 245-249 NNP denotes Sry.
T292 243-244 -COMMA- denotes ,
T291 239-243 NN denotes gene
T290 227-238 VB denotes determining
T289 220-226 NN denotes testis
T288 216-219 DT denotes the
T287 213-215 IN denotes in
T286 203-212 VB denotes described
T285 197-202 RB denotes first
T284 195-196 -COMMA- denotes ,
T283 189-195 NN denotes domain
T282 181-188 NN denotes binding
T281 177-180 NN denotes DNA
T280 175-176 -RRB- denotes )
T279 172-175 NN denotes HMG
T278 171-172 -LRB- denotes (
T277 165-170 NN denotes group
T276 156-164 NN denotes mobility
T275 151-155 JJ denotes high
T274 141-150 VB denotes conserved
T273 137-140 DT denotes the
T272 134-136 IN denotes by
T271 126-133 VB denotes defined
T270 123-125 VB denotes is
T269 118-122 WDT denotes that
T268 111-117 NN denotes family
T267 104-110 NN denotes factor
T266 90-103 NN denotes transcription
T265 86-89 NN denotes Sox
T264 82-85 DT denotes the
T263 79-81 IN denotes of
T262 72-78 NN denotes member
T261 70-71 DT denotes a
T260 67-69 VB denotes is
T259 62-66 NN denotes Sox6
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 62-66 Protein denotes Sox6
T149 245-248 Protein denotes Sry
T150 287-291 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 62-66 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T475 287-291 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 220-226 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis

GO-BP

Id Subject Object Predicate Lexical cue
T111 312-323 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T110 90-103 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T169 177-188 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 177-195 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 181-188 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T2 13-51 Sentence denotes Sox6 Silence Epsilon Globin Expression
T3 53-61 Sentence denotes Abstract
T4 62-249 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.

simple1

Id Subject Object Predicate Lexical cue
T235 287-291 Protein denotes Sox6
T234 245-248 Protein denotes Sry
T233 62-66 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 62-66 Protein denotes Sox6
T879 245-248 Protein denotes Sry
T880 287-291 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 62-66 Protein denotes Sox6
T487 245-248 Protein denotes Sry
T488 287-291 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T517 62-66 Protein denotes Sox6
T518 245-248 Protein denotes Sry
T519 287-291 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 216-248 Localization denotes the testis determining gene, Sry
T838 86-89 Protein denotes Sox
T844 62-66 Protein denotes Sox6
T846 216-248 Protein denotes the testis determining gene, Sry
T851 82-117 Protein denotes the Sox transcription factor family
T856 287-291 Protein denotes Sox6
T864 216-248 Protein denotes the testis determining gene, Sry
T865 177-248 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T629 312-323 NN denotes development
T628 308-311 DT denotes the
T627 305-307 IN denotes in
T626 300-304 NN denotes role
T625 298-299 DT denotes a
T624 292-297 NNS denotes plays
T623 287-291 JJ denotes Sox6
T622 282-286 IN denotes that
T621 272-281 VBN denotes suggested
T620 267-271 VBP denotes have
T619 259-266 NNS denotes studies
T618 250-258 JJ denotes Previous
T617 248-249 . denotes .
T616 245-248 NNP denotes Sry
T615 243-244 , denotes ,
T614 239-243 NN denotes gene
T613 227-238 VBG denotes determining
T612 220-226 NN denotes testis
T611 216-219 DT denotes the
T610 213-215 IN denotes in
T609 203-212 VBN denotes described
T608 197-202 JJ denotes first
T607 195-196 , denotes ,
T606 189-195 NN denotes domain
T605 181-188 JJ denotes binding
T604 177-180 NNP denotes DNA
T603 175-176 -RRB- denotes )
T602 172-175 NNP denotes HMG
T601 171-172 -LRB- denotes (
T600 165-170 NN denotes group
T599 156-164 NN denotes mobility
T598 151-155 JJ denotes high
T597 141-150 JJ denotes conserved
T596 137-140 DT denotes the
T595 134-136 IN denotes by
T594 126-133 VBN denotes defined
T593 123-125 VBZ denotes is
T592 118-122 WDT denotes that
T591 111-117 NN denotes family
T590 104-110 NN denotes factor
T589 90-103 NN denotes transcription
T588 86-89 NNPS denotes Sox
T587 82-85 DT denotes the
T586 79-81 IN denotes of
T585 72-78 NN denotes member
T584 70-71 DT denotes a
T583 67-69 VBZ denotes is
T582 62-66 NNP denotes Sox6
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role
R324 T628 T629 det the,development
R325 T629 T627 pobj development,in

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T208 287-291 Protein denotes Sox6
T207 126-133 Negative_regulation denotes defined
T206 126-133 Negative_regulation denotes defined
T205 189-195 Entity denotes domain
T204 245-248 Protein denotes Sry
T203 86-117 Protein denotes Sox transcription factor family
T202 62-66 Protein denotes Sox6
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 62-66 Protein denotes Sox6
T23 245-248 Protein denotes Sry
T24 287-291 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T47 62-66 Protein denotes Sox6
T48 245-248 Protein denotes Sry
T49 287-291 Protein denotes Sox6
T67 62-66 Protein denotes Sox6
T68 245-248 Protein denotes Sry
T69 287-291 Protein denotes Sox6