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PMC:1359074 / 52-421 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T257 0-10 JJ denotes Definitive
T258 11-25 NN denotes Erythropoiesis
T311 366-367 -COMMA- denotes ,
T310 360-366 NN denotes system
T309 352-359 JJ denotes nervous
T308 344-351 JJ denotes central
T307 340-343 DT denotes the
T306 337-339 IN denotes of
T305 325-336 NN denotes development
T304 321-324 DT denotes the
T303 318-320 IN denotes in
T302 313-317 NN denotes role
T301 311-312 DT denotes a
T300 305-310 VB denotes plays
T299 300-304 NN denotes Sox6
T298 295-299 IN denotes that
T297 285-294 VB denotes suggested
T296 280-284 VB denotes have
T295 272-279 NN denotes studies
T294 263-271 NNP denotes Previous
T293 258-262 NNP denotes Sry.
T292 256-257 -COMMA- denotes ,
T291 252-256 NN denotes gene
T290 240-251 VB denotes determining
T289 233-239 NN denotes testis
T288 229-232 DT denotes the
T287 226-228 IN denotes in
T286 216-225 VB denotes described
T285 210-215 RB denotes first
T284 208-209 -COMMA- denotes ,
T283 202-208 NN denotes domain
T282 194-201 NN denotes binding
T281 190-193 NN denotes DNA
T280 188-189 -RRB- denotes )
T279 185-188 NN denotes HMG
T278 184-185 -LRB- denotes (
T277 178-183 NN denotes group
T276 169-177 NN denotes mobility
T275 164-168 JJ denotes high
T274 154-163 VB denotes conserved
T273 150-153 DT denotes the
T272 147-149 IN denotes by
T271 139-146 VB denotes defined
T270 136-138 VB denotes is
T269 131-135 WDT denotes that
T268 124-130 NN denotes family
T267 117-123 NN denotes factor
T266 103-116 NN denotes transcription
T265 99-102 NN denotes Sox
T264 95-98 DT denotes the
T263 92-94 IN denotes of
T262 85-91 NN denotes member
T261 83-84 DT denotes a
T260 80-82 VB denotes is
T259 75-79 NN denotes Sox6
R49 T258 T257 arg1Of Erythropoiesis,Definitive
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a
R96 T305 T306 arg1Of development,of
R97 T305 T311 arg1Of development,","
R98 T310 T306 arg2Of system,of
R99 T310 T307 arg1Of system,the
R100 T310 T308 arg1Of system,central
R101 T310 T309 arg1Of system,nervous

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 75-79 Protein denotes Sox6
T149 258-261 Protein denotes Sry
T150 300-304 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 75-79 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T475 300-304 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 233-239 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis
T87 344-351 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central
T88 344-366 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T89 352-366 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system

GO-BP

Id Subject Object Predicate Lexical cue
T104 0-25 http://purl.obolibrary.org/obo/GO_0060318 denotes Definitive Erythropoiesis
T107 11-25 http://purl.obolibrary.org/obo/GO_0030218 denotes Erythropoiesis
T112 325-366 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T111 325-336 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T110 103-116 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T113 325-366 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system

GO-MF

Id Subject Object Predicate Lexical cue
T169 190-201 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 190-208 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 194-201 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T2 26-64 Sentence denotes Sox6 Silence Epsilon Globin Expression
T3 66-74 Sentence denotes Abstract
T4 75-262 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.

ICD10

Id Subject Object Predicate Lexical cue
T173 352-359 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T235 300-304 Protein denotes Sox6
T234 258-261 Protein denotes Sry
T233 75-79 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 75-79 Protein denotes Sox6
T879 258-261 Protein denotes Sry
T880 300-304 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 75-79 Protein denotes Sox6
T487 258-261 Protein denotes Sry
T488 300-304 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T517 75-79 Protein denotes Sox6
T518 258-261 Protein denotes Sry
T519 300-304 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 229-261 Localization denotes the testis determining gene, Sry
T838 99-102 Protein denotes Sox
T844 75-79 Protein denotes Sox6
T846 229-261 Protein denotes the testis determining gene, Sry
T851 95-130 Protein denotes the Sox transcription factor family
T856 300-304 Protein denotes Sox6
T864 229-261 Protein denotes the testis determining gene, Sry
T865 190-261 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T580 0-10 NNP denotes Definitive
T581 11-25 NNP denotes Erythropoiesis
T635 366-367 , denotes ,
T634 360-366 NN denotes system
T633 352-359 JJ denotes nervous
T632 344-351 JJ denotes central
T631 340-343 DT denotes the
T630 337-339 IN denotes of
T629 325-336 NN denotes development
T628 321-324 DT denotes the
T627 318-320 IN denotes in
T626 313-317 NN denotes role
T625 311-312 DT denotes a
T624 305-310 NNS denotes plays
T623 300-304 JJ denotes Sox6
T622 295-299 IN denotes that
T621 285-294 VBN denotes suggested
T620 280-284 VBP denotes have
T619 272-279 NNS denotes studies
T618 263-271 JJ denotes Previous
T617 261-262 . denotes .
T616 258-261 NNP denotes Sry
T615 256-257 , denotes ,
T614 252-256 NN denotes gene
T613 240-251 VBG denotes determining
T612 233-239 NN denotes testis
T611 229-232 DT denotes the
T610 226-228 IN denotes in
T609 216-225 VBN denotes described
T608 210-215 JJ denotes first
T607 208-209 , denotes ,
T606 202-208 NN denotes domain
T605 194-201 JJ denotes binding
T604 190-193 NNP denotes DNA
T603 188-189 -RRB- denotes )
T602 185-188 NNP denotes HMG
T601 184-185 -LRB- denotes (
T600 178-183 NN denotes group
T599 169-177 NN denotes mobility
T598 164-168 JJ denotes high
T597 154-163 JJ denotes conserved
T596 150-153 DT denotes the
T595 147-149 IN denotes by
T594 139-146 VBN denotes defined
T593 136-138 VBZ denotes is
T592 131-135 WDT denotes that
T591 124-130 NN denotes family
T590 117-123 NN denotes factor
T589 103-116 NN denotes transcription
T588 99-102 NNPS denotes Sox
T587 95-98 DT denotes the
T586 92-94 IN denotes of
T585 85-91 NN denotes member
T584 83-84 DT denotes a
T583 80-82 VBZ denotes is
T582 75-79 NNP denotes Sox6
R276 T580 T582 compound Definitive,Sox6
R277 T581 T582 compound Erythropoiesis,Sox6
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role
R324 T628 T629 det the,development
R325 T629 T627 pobj development,in
R326 T630 T629 prep of,development
R327 T631 T634 det the,system
R328 T632 T634 amod central,system
R329 T633 T634 amod nervous,system
R330 T634 T630 pobj system,of
R331 T635 T634 punct ",",system

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T208 300-304 Protein denotes Sox6
T207 139-146 Negative_regulation denotes defined
T206 139-146 Negative_regulation denotes defined
T205 202-208 Entity denotes domain
T204 258-261 Protein denotes Sry
T203 99-130 Protein denotes Sox transcription factor family
T202 75-79 Protein denotes Sox6
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 75-79 Protein denotes Sox6
T23 258-261 Protein denotes Sry
T24 300-304 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T47 75-79 Protein denotes Sox6
T48 258-261 Protein denotes Sry
T49 300-304 Protein denotes Sox6
T67 75-79 Protein denotes Sox6
T68 258-261 Protein denotes Sry
T69 300-304 Protein denotes Sox6