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PMC:1359074 / 4520-4718 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-10760285-85760966 194-196 10760285 denotes 14
T42 194-196 10760285 denotes 14

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2030 196-197 -RRB- denotes ]
T2029 194-196 CD denotes 14
T2028 193-194 -LRB- denotes [
T2027 191-192 -RRB- denotes )
T2026 180-191 NN denotes breakpoints
T2025 168-179 JJ denotes chromosomal
T2024 164-167 DT denotes the
T2023 161-163 IN denotes of
T2022 149-160 NN denotes nucleotides
T2021 142-148 CD denotes 50,000
T2020 135-141 IN denotes within
T2019 130-134 NN denotes gene
T2018 124-129 JJ denotes other
T2017 121-123 DT denotes no
T2016 117-120 CC denotes and
T2015 116-117 -LRB- denotes (
T2006 73-81 VB denotes disrupts
T2005 68-72 WDT denotes that
T2004 58-67 NN denotes inversion
T2003 56-57 CD denotes 7
T2002 45-55 NN denotes Chromosome
T2001 43-44 DT denotes a
T2000 38-42 IN denotes with
T1999 27-37 VB denotes associated
T1998 24-26 VB denotes is
T1997 17-23 NN denotes allele
T1996 10-16 JJ denotes mutant
T1995 4-9 NN denotes p100H
T1994 0-3 DT denotes The
T2014 111-115 NN denotes gene
T2013 106-110 NN denotes Sox6
T2012 102-105 DT denotes the
T2011 98-101 CC denotes and
T2010 93-97 NN denotes gene
T2009 91-92 NN denotes p
T2008 87-90 DT denotes the
T2007 82-86 CC denotes both
R1110 T1997 T1994 arg1Of allele,The
R1111 T1997 T1995 arg1Of allele,p100H
R1112 T1997 T1996 arg1Of allele,mutant
R1113 T1997 T1998 arg1Of allele,is
R1114 T1997 T1999 arg2Of allele,associated
R1115 T1999 T1998 arg2Of associated,is
R1116 T1999 T2000 arg1Of associated,with
R1117 T2004 T2000 arg2Of inversion,with
R1118 T2004 T2001 arg1Of inversion,a
R1119 T2004 T2002 arg1Of inversion,Chromosome
R1120 T2004 T2003 arg1Of inversion,7
R1121 T2004 T2005 arg1Of inversion,that
R1122 T2004 T2006 arg1Of inversion,disrupts
R1123 T2006 T2028 arg1Of disrupts,[
R1124 T2010 T2008 arg1Of gene,the
R1125 T2010 T2009 arg1Of gene,p
R1126 T2010 T2011 arg1Of gene,and
R1127 T2011 T2006 arg2Of and,disrupts
R1128 T2011 T2007 arg1Of and,both
R1129 T2014 T2011 arg2Of gene,and
R1130 T2014 T2012 arg1Of gene,the
R1131 T2014 T2013 arg1Of gene,Sox6
R1132 T2014 T2015 arg1Of gene,(
R1133 T2019 T2015 arg2Of gene,(
R1134 T2019 T2016 arg1Of gene,and
R1135 T2019 T2017 arg1Of gene,no
R1136 T2019 T2018 arg1Of gene,other
R1137 T2019 T2020 arg1Of gene,within
R1138 T2022 T2020 arg2Of nucleotides,within
R1139 T2022 T2021 arg1Of nucleotides,"50,000"
R1140 T2022 T2023 arg1Of nucleotides,of
R1141 T2026 T2023 arg2Of breakpoints,of
R1142 T2026 T2024 arg1Of breakpoints,the
R1143 T2026 T2025 arg1Of breakpoints,chromosomal
R1144 T2027 T2015 arg3Of ),(
R1145 T2029 T2028 arg2Of 14,[
R1146 T2030 T2028 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1427 106-110 Protein denotes Sox6
T1426 91-92 Protein denotes p

GO-CC

Id Subject Object Predicate Lexical cue
T1494 45-55 http://purl.obolibrary.org/obo/GO_0005694 denotes Chromosome

sentences

Id Subject Object Predicate Lexical cue
T1209 0-198 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].
T29 0-198 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].

simple1

Id Subject Object Predicate Lexical cue
T1654 106-110 Protein denotes Sox6
T1653 91-92 Protein denotes p

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4277 73-81 Negative_regulation denotes disrupts
T4232 106-110 Protein denotes Sox6
T4231 91-92 Protein denotes p
R3029 T4231 T4277 themeOf p,disrupts
R3030 T4232 T4277 themeOf Sox6,disrupts

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2741 73-81 Negative_regulation denotes disrupts
T2696 106-110 Protein denotes Sox6
T2695 91-92 Protein denotes p
R1786 T2696 T2741 themeOf Sox6,disrupts

DLUT931

Id Subject Object Predicate Lexical cue
T2819 73-81 Negative_regulation denotes disrupts
T2774 106-110 Protein denotes Sox6
T2773 91-92 Protein denotes p
R1855 T2774 T2819 themeOf Sox6,disrupts
R1854 T2773 T2819 themeOf p,disrupts

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4064 38-55 Entity denotes with a Chromosome
T4045 87-97 Protein denotes the p gene
T4043 121-191 Protein denotes no other gene within 50,000 nucleotides of the chromosomal breakpoints
T4032 0-23 Protein denotes The p100H mutant allele
T4212 0-57 Binding denotes The p100H mutant allele is associated with a Chromosome 7
T4139 106-110 Protein denotes Sox6
T4127 91-92 Protein denotes p
T4150 102-192 Protein denotes the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints)
T4168 142-191 Entity denotes 50,000 nucleotides of the chromosomal breakpoints
R2959 T4032 T4212 themeOf The p100H mutant allele,The p100H mutant allele is associated with a Chromosome 7
R2997 T4064 T4212 themeOf with a Chromosome,The p100H mutant allele is associated with a Chromosome 7

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3247 121-123 DT denotes no
T3246 117-120 CC denotes and
T3245 116-117 -LRB- denotes (
T3244 111-115 NN denotes gene
T3243 106-110 NNP denotes Sox6
T3242 102-105 DT denotes the
T3241 98-101 CC denotes and
T3240 93-97 NN denotes gene
T3239 91-92 NN denotes p
T3238 87-90 DT denotes the
T3237 82-86 CC denotes both
T3236 73-81 VBZ denotes disrupts
T3235 68-72 WDT denotes that
T3234 58-67 NN denotes inversion
T3233 56-57 CD denotes 7
T3232 45-55 NN denotes Chromosome
T3231 43-44 DT denotes a
T3230 38-42 IN denotes with
T3229 27-37 VBN denotes associated
T3228 24-26 VBZ denotes is
T3227 17-23 NN denotes allele
T3226 10-16 JJ denotes mutant
T3225 4-9 JJ denotes p100H
T3224 0-3 DT denotes The
T3261 197-198 . denotes .
T3260 196-197 NNP denotes ]
T3259 194-196 CD denotes 14
T3258 193-194 NNP denotes [
T3257 191-192 -RRB- denotes )
T3256 180-191 NNS denotes breakpoints
T3255 168-179 JJ denotes chromosomal
T3254 164-167 DT denotes the
T3253 161-163 IN denotes of
T3252 149-160 NNS denotes nucleotides
T3251 142-148 CD denotes 50,000
T3250 135-141 IN denotes within
T3249 130-134 NN denotes gene
T3248 124-129 JJ denotes other
R2202 T3224 T3227 det The,allele
R2204 T3225 T3227 amod p100H,allele
R2205 T3226 T3227 amod mutant,allele
R2206 T3227 T3229 nsubjpass allele,associated
R2208 T3228 T3229 auxpass is,associated
R2209 T3229 T3229 ROOT associated,associated
R2211 T3230 T3229 prep with,associated
R2212 T3231 T3234 det a,inversion
R2213 T3232 T3234 nmod Chromosome,inversion
R2214 T3233 T3232 nummod 7,Chromosome
R2215 T3234 T3230 pobj inversion,with
R2216 T3235 T3236 nsubj that,disrupts
R2218 T3236 T3234 relcl disrupts,inversion
R2219 T3237 T3240 preconj both,gene
R2220 T3238 T3240 det the,gene
R2222 T3239 T3240 compound p,gene
R2223 T3240 T3236 dobj gene,disrupts
R2224 T3241 T3240 cc and,gene
R2226 T3242 T3244 det the,gene
R2227 T3243 T3244 compound Sox6,gene
R2228 T3244 T3240 conj gene,gene
R2230 T3245 T3244 punct (,gene
R2231 T3246 T3244 cc and,gene
R2232 T3247 T3249 det no,gene
R2234 T3248 T3249 amod other,gene
R2235 T3249 T3244 conj gene,gene
R2236 T3250 T3249 prep within,gene
R2238 T3251 T3252 nummod "50,000",nucleotides
R2239 T3252 T3250 pobj nucleotides,within
R2241 T3253 T3252 prep of,nucleotides
R2242 T3254 T3256 det the,breakpoints
R2243 T3255 T3256 amod chromosomal,breakpoints
R2245 T3256 T3253 pobj breakpoints,of
R2246 T3257 T3229 punct ),associated
R2248 T3258 T3260 nmod [,]
R2249 T3259 T3260 nummod 14,]
R2250 T3260 T3260 ROOT ],]
R2251 T3261 T3260 punct .,]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1527 73-81 Positive_regulation denotes disrupts
T1526 106-115 Protein denotes Sox6 gene
T1525 4-9 Protein denotes p100H
R764 T1526 T1527 themeOf Sox6 gene,disrupts

testone

Id Subject Object Predicate Lexical cue
T1035 73-81 Negative_regulation denotes disrupts
T990 106-110 Protein denotes Sox6
T989 91-92 Protein denotes p
R602 T989 T1035 themeOf p,disrupts
R603 T990 T1035 themeOf Sox6,disrupts

test3

Id Subject Object Predicate Lexical cue
T1135 106-110 Protein denotes Sox6
T1134 91-92 Protein denotes p
T1078 106-110 Protein denotes Sox6
T1077 91-92 Protein denotes p