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PMC:1359074 / 420-620 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T343 192-198 NN denotes assays
T342 179-191 NN denotes Transfection
T341 166-177 NN denotes circulation
T340 160-165 JJ denotes fetal
T339 156-159 DT denotes the
T338 153-155 IN denotes in
T337 145-152 JJ denotes present
T336 141-144 VB denotes are
T335 135-140 NN denotes cells
T334 131-134 JJ denotes red
T333 121-130 JJ denotes nucleated
T332 118-120 IN denotes of
T331 110-117 NN denotes numbers
T330 100-109 VB denotes increased
T329 96-99 CC denotes and
T328 94-95 -COMMA- denotes ,
T327 85-94 VB denotes expressed
T326 72-84 RB denotes persistently
T325 69-71 VB denotes is
T324 62-68 NN denotes globin
T323 59-61 JJ denotes ɛy
T322 57-58 -COMMA- denotes ,
T321 52-57 NN denotes p100H
T320 50-51 -COMMA- denotes ,
T319 45-50 NN denotes mouse
T318 30-44 JJ denotes Sox6-deficient
T317 26-29 DT denotes the
T316 23-25 IN denotes In
T315 15-21 NN denotes muscle
T314 11-14 CC denotes and
T313 9-10 -COMMA- denotes ,
T312 0-9 NN denotes cartilage
R106 T314 T313 arg1Of and,","
R107 T315 T314 arg2Of muscle,and
R108 T319 T316 arg2Of mouse,In
R109 T319 T317 arg1Of mouse,the
R110 T319 T318 arg1Of mouse,Sox6-deficient
R111 T319 T320 arg1Of mouse,","
R112 T321 T320 arg2Of p100H,","
R113 T324 T323 arg1Of globin,ɛy
R114 T324 T325 arg1Of globin,is
R115 T324 T327 arg2Of globin,expressed
R116 T327 T325 arg2Of expressed,is
R117 T327 T326 arg1Of expressed,persistently
R118 T327 T329 arg1Of expressed,and
R119 T329 T316 arg1Of and,In
R120 T329 T322 arg1Of and,","
R121 T329 T328 arg1Of and,","
R122 T331 T330 arg2Of numbers,increased
R123 T331 T332 arg1Of numbers,of
R124 T331 T336 arg1Of numbers,are
R125 T331 T337 arg1Of numbers,present
R126 T335 T332 arg2Of cells,of
R127 T335 T333 arg1Of cells,nucleated
R128 T335 T334 arg1Of cells,red
R129 T336 T329 arg2Of are,and
R130 T337 T336 arg2Of present,are
R131 T337 T338 arg1Of present,in
R132 T341 T338 arg2Of circulation,in
R133 T341 T339 arg1Of circulation,the
R134 T341 T340 arg1Of circulation,fetal
R135 T343 T342 arg1Of assays,Transfection

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T151 30-34 Protein denotes Sox6
T152 59-68 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T476 30-34 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T101 62-68 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T166 62-68 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T174 135-140 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T94 23-178 Sentence denotes In the Sox6-deficient mouse, p100H, ɛy globin is persistently expressed, and increased numbers of nucleated red cells are present in the fetal circulation.
T6 23-178 Sentence denotes In the Sox6-deficient mouse, p100H, ɛy globin is persistently expressed, and increased numbers of nucleated red cells are present in the fetal circulation.

simple1

Id Subject Object Predicate Lexical cue
T237 59-68 Protein denotes ɛy globin
T236 30-34 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T881 30-34 Protein denotes Sox6
T882 59-68 Protein denotes ɛy globin
T896 85-94 Gene_expression denotes expressed
T897 35-44 Negative_regulation denotes deficient
R586 T881 T897 themeOf Sox6,deficient
R587 T882 T896 themeOf ɛy globin,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T489 30-34 Protein denotes Sox6
T490 59-68 Protein denotes ɛy globin
T505 35-44 Negative_regulation denotes deficient
T506 85-94 Gene_expression denotes expressed
R447 T489 T505 themeOf Sox6,deficient
R448 T490 T506 themeOf ɛy globin,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T520 30-34 Protein denotes Sox6
T521 59-68 Protein denotes ɛy globin
T536 35-44 Negative_regulation denotes deficient
T537 85-94 Gene_expression denotes expressed
R463 T520 T536 themeOf Sox6,deficient
R464 T521 T537 themeOf ɛy globin,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T871 59-94 Gene_expression denotes ɛy globin is persistently expressed
T850 52-57 Entity denotes p100H
T853 59-68 Protein denotes ɛy globin
R580 T853 T871 themeOf ɛy globin,ɛy globin is persistently expressed

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T669 192-198 NNS denotes assays
T668 179-191 NNP denotes Transfection
T667 177-178 . denotes .
T666 166-177 NN denotes circulation
T665 160-165 JJ denotes fetal
T664 156-159 DT denotes the
T663 153-155 IN denotes in
T662 145-152 JJ denotes present
T661 141-144 VBP denotes are
T660 135-140 NNS denotes cells
T659 131-134 JJ denotes red
T658 121-130 JJ denotes nucleated
T657 118-120 IN denotes of
T656 110-117 NNS denotes numbers
T655 100-109 VBD denotes increased
T654 96-99 CC denotes and
T653 94-95 , denotes ,
T652 85-94 VBN denotes expressed
T651 72-84 RB denotes persistently
T650 69-71 VBZ denotes is
T649 62-68 NN denotes globin
T648 59-61 JJ denotes ɛy
T647 57-58 , denotes ,
T646 52-57 NNP denotes p100H
T645 50-51 , denotes ,
T644 45-50 NN denotes mouse
T643 30-44 JJ denotes Sox6-deficient
T642 26-29 DT denotes the
T641 23-25 IN denotes In
T640 21-22 . denotes .
T639 15-21 NN denotes muscle
T638 11-14 CC denotes and
T637 9-10 , denotes ,
T636 0-9 NN denotes cartilage
R333 T637 T636 punct ",",cartilage
R334 T638 T636 cc and,cartilage
R335 T639 T636 conj muscle,cartilage
R337 T641 T652 prep In,expressed
R338 T642 T644 det the,mouse
R339 T643 T644 amod Sox6-deficient,mouse
R340 T644 T641 pobj mouse,In
R341 T645 T652 punct ",",expressed
R342 T646 T652 nsubjpass p100H,expressed
R343 T647 T652 punct ",",expressed
R344 T648 T649 amod ɛy,globin
R345 T649 T652 nsubjpass globin,expressed
R346 T650 T652 auxpass is,expressed
R347 T651 T652 advmod persistently,expressed
R348 T652 T652 ROOT expressed,expressed
R349 T653 T652 punct ",",expressed
R350 T654 T652 cc and,expressed
R351 T655 T656 amod increased,numbers
R352 T656 T661 nsubj numbers,are
R353 T657 T656 prep of,numbers
R354 T658 T660 amod nucleated,cells
R355 T659 T660 amod red,cells
R356 T660 T657 pobj cells,of
R357 T661 T652 conj are,expressed
R358 T662 T661 acomp present,are
R359 T663 T662 prep in,present
R360 T664 T666 det the,circulation
R361 T665 T666 amod fetal,circulation
R362 T666 T663 pobj circulation,in
R363 T667 T661 punct .,are
R364 T668 T669 compound Transfection,assays

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T214 85-94 Gene_expression denotes expressed
T213 85-94 Gene_expression denotes expressed
T212 35-44 Negative_regulation denotes deficient
T211 59-68 Protein denotes ɛy globin
T210 52-57 Protein denotes p100H
T209 30-34 Protein denotes Sox6
R33 T209 T212 themeOf Sox6,deficient
R34 T210 T213 themeOf p100H,expressed
R35 T211 T214 themeOf ɛy globin,expressed

testone

Id Subject Object Predicate Lexical cue
T25 30-34 Protein denotes Sox6
T26 59-68 Protein denotes ɛy globin
T40 35-44 Negative_regulation denotes deficient
T41 85-94 Gene_expression denotes expressed
R2 T25 T40 themeOf Sox6,deficient
R3 T26 T41 themeOf ɛy globin,expressed

test3

Id Subject Object Predicate Lexical cue
T50 30-34 Protein denotes Sox6
T51 59-68 Protein denotes ɛy globin
T70 30-34 Protein denotes Sox6
T71 59-68 Protein denotes ɛy globin
T72 85-94 Gene_expression denotes expressed
R12 T71 T72 themeOf ɛy globin,expressed