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PMC:1359074 / 39431-40244 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18887 790-800 NN denotes ransfectio
T18886 778-790 NN denotes ontrol for t
T18885 775-778 IN denotes a c
T18884 768-775 NN denotes sed as
T18883 767-768 DT denotes u
T18882 765-767 IN denotes s
T18881 761-765 VB denotes ) wa
T18880 758-761 VB denotes ega
T18879 757-758 -RRB- denotes m
T18878 750-757 NN denotes ng (Pro
T18877 749-750 -LRB- denotes 5
T18876 745-749 NN denotes MV 1
T18875 738-745 NN denotes . pRL-C
T18874 737-738 -RRB- denotes )
T18873 735-737 NN denotes ng
T18872 730-734 CD denotes 1000
T18871 726-729 CC denotes and
T18870 724-725 -COMMA- denotes ,
T18869 722-724 NN denotes ng
T18868 718-721 CD denotes 500
T18867 716-717 -COMMA- denotes ,
T18866 714-716 NN denotes ng
T18865 710-713 CD denotes 200
T18864 705-709 VB denotes used
T18863 702-704 PRP denotes we
T18862 700-701 -COMMA- denotes ,
T18861 694-700 NN denotes effect
T18860 687-693 NN denotes dosage
T18859 684-686 IN denotes of
T18858 677-683 NN denotes assays
T18857 674-676 IN denotes In
T18856 671-672 -RRB- denotes )
T18855 669-671 NN denotes ng
T18854 664-668 CD denotes 1000
T18853 663-664 -LRB- denotes (
T18852 656-662 NN denotes vector
T18851 641-655 NN denotes overexpression
T18850 636-640 NN denotes Sox6
T18849 633-635 CC denotes or
T18848 626-632 NN denotes vector
T18847 620-625 JJ denotes empty
T18846 613-619 CC denotes either
T18845 608-612 IN denotes with
T18844 602-607 IN denotes along
T18843 600-601 -RRB- denotes )
T18842 598-600 NN denotes ng
T18841 594-597 CD denotes 500
T18840 593-594 -LRB- denotes (
T18839 582-592 NN denotes constructs
T18838 573-581 NN denotes reporter
T18837 564-572 NN denotes promoter
T18836 561-563 JJ denotes ɛy
T18785 299-300 CD denotes 2
T18784 298-299 -LRB- denotes (
T18783 286-297 NN denotes L-glutamine
T18782 282-285 CC denotes and
T18781 280-281 -COMMA- denotes ,
T18780 279-280 -RRB- denotes )
T18779 274-279 NN denotes μg/ml
T18778 270-273 CD denotes 100
T18777 257-269 NN denotes streptomycin
T18776 255-256 -COMMA- denotes ,
T18775 254-255 -RRB- denotes )
T18774 246-254 NN denotes units/ml
T18773 242-245 CD denotes 100
T18772 241-242 -LRB- denotes (
T18771 230-240 NN denotes penicillin
T18770 228-229 -COMMA- denotes ,
T18769 227-228 -RRB- denotes )
T18768 221-227 NNP denotes States
T18767 214-220 NNP denotes United
T18766 212-213 -COMMA- denotes ,
T18765 202-212 NNP denotes California
T18764 200-201 -COMMA- denotes ,
T18763 192-200 NNP denotes Carlsbad
T18762 190-191 -COMMA- denotes ,
T18761 181-190 NN denotes Ivitrogen
T18760 180-181 -LRB- denotes (
T18759 174-179 NN denotes serum
T18758 169-173 NN denotes calf
T18757 163-168 JJ denotes fetal
T18756 161-162 NN denotes %
T18755 159-161 CD denotes 10
T18754 142-158 JJ denotes heat-inactivated
T18753 137-141 IN denotes with
T18752 124-136 VB denotes supplemented
T18751 112-123 NN denotes L-glutamine
T18750 109-111 NN denotes mM
T18749 107-108 CD denotes 2
T18748 102-106 IN denotes with
T18747 98-101 NN denotes F12
T18746 95-97 POS denotes 's
T18745 92-95 NNP denotes Ham
T18744 89-91 IN denotes in
T18743 80-88 VB denotes cultured
T18742 75-79 VB denotes were
T18741 73-74 -RRB- denotes )
T18740 67-73 NNP denotes States
T18739 60-66 NNP denotes United
T18738 58-59 -COMMA- denotes ,
T18737 52-58 NNP denotes Jersey
T18736 48-51 NNP denotes New
T18735 46-47 -COMMA- denotes ,
T18734 40-46 NNP denotes Camden
T18733 38-39 -COMMA- denotes ,
T18732 26-38 NNP denotes Repositories
T18731 21-25 NNP denotes Cell
T18730 13-20 NNP denotes Coriell
T18729 12-13 -LRB- denotes (
T18728 6-11 NN denotes cells
T18727 0-5 NN denotes GM979
T18835 556-560 IN denotes with
T18834 544-555 VB denotes transfected
T18833 539-543 VB denotes were
T18832 533-538 NN denotes Cells
T18831 530-531 -RRB- denotes )
T18830 524-530 NNP denotes States
T18829 517-523 NNP denotes United
T18828 515-516 -COMMA- denotes ,
T18827 508-515 NNP denotes Indiana
T18826 506-507 -COMMA- denotes ,
T18825 494-506 NNP denotes Indianapolis
T18824 492-493 -COMMA- denotes ,
T18823 487-492 NNP denotes Roche
T18822 486-487 -LRB- denotes (
T18821 478-485 NN denotes FuGENE6
T18820 475-477 IN denotes by
T18819 466-474 NN denotes plasmids
T18818 461-465 IN denotes with
T18817 449-460 VB denotes transfected
T18816 444-448 VB denotes were
T18815 437-443 NN denotes growth
T18814 434-436 IN denotes of
T18813 428-433 NN denotes phase
T18812 424-427 NN denotes log
T18811 421-423 IN denotes in
T18810 419-420 -RRB- denotes )
T18809 416-419 CD denotes 105
T18808 414-415 NN denotes ×
T18807 412-413 CD denotes 4
T18806 411-412 -LRB- denotes (
T18805 405-410 NN denotes cells
T18804 399-404 NN denotes GM979
T18803 396-397 -RRB- denotes )
T18802 391-396 NN denotes serum
T18801 387-390 DT denotes the
T18800 374-386 VB denotes inactivating
T18799 369-373 NN denotes heat
T18798 361-368 IN denotes without
T18797 360-361 -LRB- denotes (
T18796 354-359 JJ denotes above
T18795 351-353 IN denotes as
T18794 338-350 VB denotes supplemented
T18793 333-337 NN denotes DMEM
T18792 330-332 IN denotes in
T18791 321-329 VB denotes cultured
T18790 316-320 VB denotes were
T18789 310-315 NN denotes cells
T18788 306-309 NN denotes MEL
T18787 303-304 -RRB- denotes )
T18786 301-303 NN denotes mM
R13230 T18728 T18727 arg1Of cells,GM979
R13231 T18728 T18729 arg1Of cells,(
R13232 T18728 T18742 arg1Of cells,were
R13233 T18728 T18743 arg2Of cells,cultured
R13234 T18732 T18730 arg1Of Repositories,Coriell
R13235 T18732 T18731 arg1Of Repositories,Cell
R13236 T18732 T18733 arg1Of Repositories,","
R13237 T18733 T18735 arg1Of ",",","
R13238 T18734 T18733 arg2Of Camden,","
R13239 T18736 T18735 arg2Of New,","
R13240 T18737 T18729 arg2Of Jersey,(
R13241 T18737 T18732 arg1Of Jersey,Repositories
R13242 T18737 T18734 arg1Of Jersey,Camden
R13243 T18737 T18736 arg1Of Jersey,New
R13244 T18737 T18738 arg1Of Jersey,","
R13245 T18740 T18738 arg2Of States,","
R13246 T18740 T18739 arg1Of States,United
R13247 T18741 T18729 arg3Of ),(
R13248 T18743 T18742 arg2Of cultured,were
R13249 T18743 T18744 arg1Of cultured,in
R13250 T18745 T18746 arg2Of Ham,'s
R13251 T18747 T18744 arg2Of F12,in
R13252 T18747 T18746 arg1Of F12,'s
R13253 T18747 T18748 arg1Of F12,with
R13254 T18749 T18750 arg1Of 2,mM
R13255 T18751 T18748 arg2Of L-glutamine,with
R13256 T18751 T18749 arg1Of L-glutamine,2
R13257 T18751 T18752 arg2Of L-glutamine,supplemented
R13258 T18752 T18753 arg1Of supplemented,with
R13259 T18755 T18756 arg1Of 10,%
R13260 T18759 T18754 arg1Of serum,heat-inactivated
R13261 T18759 T18755 arg1Of serum,10
R13262 T18759 T18757 arg1Of serum,fetal
R13263 T18759 T18758 arg1Of serum,calf
R13264 T18759 T18760 arg1Of serum,(
R13265 T18759 T18782 arg1Of serum,and
R13266 T18761 T18762 arg1Of Ivitrogen,","
R13267 T18762 T18764 arg1Of ",",","
R13268 T18763 T18762 arg2Of Carlsbad,","
R13269 T18764 T18766 arg1Of ",",","
R13270 T18765 T18764 arg2Of California,","
R13271 T18766 T18769 arg1Of ",",)
R13272 T18766 T18770 arg1Of ",",","
R13273 T18768 T18766 arg2Of States,","
R13274 T18768 T18767 arg1Of States,United
R13275 T18770 T18776 arg1Of ",",","
R13276 T18771 T18770 arg2Of penicillin,","
R13277 T18771 T18772 arg1Of penicillin,(
R13278 T18774 T18772 arg2Of units/ml,(
R13279 T18774 T18773 arg1Of units/ml,100
R13280 T18775 T18772 arg3Of ),(
R13281 T18776 T18760 arg2Of ",",(
R13282 T18779 T18776 arg2Of μg/ml,","
R13283 T18779 T18777 arg1Of μg/ml,streptomycin
R13284 T18779 T18778 arg1Of μg/ml,100
R13285 T18780 T18760 arg3Of ),(
R13286 T18782 T18753 arg2Of and,with
R13287 T18782 T18781 arg1Of and,","
R13288 T18783 T18782 arg2Of L-glutamine,and
R13289 T18783 T18784 arg1Of L-glutamine,(
R13290 T18786 T18784 arg2Of mM,(
R13291 T18786 T18785 arg1Of mM,2
R13292 T18787 T18784 arg3Of ),(
R13293 T18789 T18788 arg1Of cells,MEL
R13294 T18789 T18790 arg1Of cells,were
R13295 T18789 T18791 arg2Of cells,cultured
R13296 T18791 T18790 arg2Of cultured,were
R13297 T18791 T18792 arg1Of cultured,in
R13298 T18793 T18792 arg2Of DMEM,in
R13299 T18793 T18794 arg2Of DMEM,supplemented
R13300 T18794 T18795 arg1Of supplemented,as
R13301 T18794 T18797 arg1Of supplemented,(
R13302 T18796 T18795 arg2Of above,as
R13303 T18798 T18797 arg2Of without,(
R13304 T18799 T18798 arg2Of heat,without
R13305 T18799 T18800 arg1Of heat,inactivating
R13306 T18802 T18800 arg2Of serum,inactivating
R13307 T18802 T18801 arg1Of serum,the
R13308 T18803 T18797 arg3Of ),(
R13309 T18805 T18804 arg1Of cells,GM979
R13310 T18805 T18806 arg1Of cells,(
R13311 T18805 T18811 arg1Of cells,in
R13312 T18805 T18816 arg1Of cells,were
R13313 T18805 T18817 arg2Of cells,transfected
R13314 T18808 T18806 arg2Of ×,(
R13315 T18808 T18807 arg1Of ×,4
R13316 T18808 T18809 arg1Of ×,105
R13317 T18810 T18806 arg3Of ),(
R13318 T18813 T18811 arg2Of phase,in
R13319 T18813 T18812 arg1Of phase,log
R13320 T18813 T18814 arg1Of phase,of
R13321 T18815 T18814 arg2Of growth,of
R13322 T18817 T18816 arg2Of transfected,were
R13323 T18817 T18818 arg1Of transfected,with
R13324 T18817 T18820 arg1Of transfected,by
R13325 T18817 T18822 arg1Of transfected,(
R13326 T18819 T18818 arg2Of plasmids,with
R13327 T18821 T18820 arg2Of FuGENE6,by
R13328 T18823 T18824 arg1Of Roche,","
R13329 T18824 T18826 arg1Of ",",","
R13330 T18825 T18824 arg2Of Indianapolis,","
R13331 T18826 T18828 arg1Of ",",","
R13332 T18827 T18826 arg2Of Indiana,","
R13333 T18829 T18828 arg2Of United,","
R13334 T18830 T18822 arg2Of States,(
R13335 T18830 T18823 arg1Of States,Roche
R13336 T18830 T18825 arg1Of States,Indianapolis
R13337 T18830 T18827 arg1Of States,Indiana
R13338 T18830 T18829 arg1Of States,United
R13339 T18831 T18822 arg3Of ),(
R13340 T18832 T18833 arg1Of Cells,were
R13341 T18832 T18834 arg2Of Cells,transfected
R13342 T18834 T18833 arg2Of transfected,were
R13343 T18834 T18835 arg1Of transfected,with
R13344 T18834 T18844 arg1Of transfected,along
R13345 T18839 T18835 arg2Of constructs,with
R13346 T18839 T18836 arg1Of constructs,ɛy
R13347 T18839 T18837 arg1Of constructs,promoter
R13348 T18839 T18838 arg1Of constructs,reporter
R13349 T18839 T18840 arg1Of constructs,(
R13350 T18842 T18840 arg2Of ng,(
R13351 T18842 T18841 arg1Of ng,500
R13352 T18843 T18840 arg3Of ),(
R13353 T18844 T18845 arg1Of along,with
R13354 T18848 T18847 arg1Of vector,empty
R13355 T18848 T18849 arg1Of vector,or
R13356 T18849 T18845 arg2Of or,with
R13357 T18849 T18846 arg1Of or,either
R13358 T18852 T18849 arg2Of vector,or
R13359 T18852 T18850 arg1Of vector,Sox6
R13360 T18852 T18851 arg1Of vector,overexpression
R13361 T18852 T18853 arg1Of vector,(
R13362 T18855 T18853 arg2Of ng,(
R13363 T18855 T18854 arg1Of ng,1000
R13364 T18856 T18853 arg3Of ),(
R13365 T18858 T18857 arg2Of assays,In
R13366 T18858 T18859 arg1Of assays,of
R13367 T18861 T18859 arg2Of effect,of
R13368 T18861 T18860 arg1Of effect,dosage
R13369 T18863 T18864 arg1Of we,used
R13370 T18864 T18857 arg1Of used,In
R13371 T18864 T18862 arg1Of used,","
R13372 T18866 T18865 arg1Of ng,200
R13373 T18866 T18867 arg1Of ng,","
R13374 T18867 T18871 arg1Of ",",and
R13375 T18869 T18867 arg2Of ng,","
R13376 T18869 T18868 arg1Of ng,500
R13377 T18871 T18864 arg2Of and,used
R13378 T18871 T18870 arg1Of and,","
R13379 T18871 T18874 arg1Of and,)
R13380 T18871 T18880 modOf and,ega
R13381 T18873 T18871 arg2Of ng,and
R13382 T18873 T18872 arg1Of ng,1000
R13383 T18876 T18875 arg1Of MV 1,. pRL-C
R13384 T18876 T18877 arg1Of MV 1,5
R13385 T18876 T18880 arg1Of MV 1,ega
R13386 T18876 T18881 arg2Of MV 1,) wa
R13387 T18878 T18877 arg2Of ng (Pro,5
R13388 T18879 T18877 arg3Of m,5
R13389 T18881 T18880 arg2Of ) wa,ega
R13390 T18881 T18882 arg1Of ) wa,s
R13391 T18884 T18882 arg2Of sed as ,s
R13392 T18884 T18883 arg1Of sed as ,u
R13393 T18884 T18885 arg1Of sed as ,a c
R13394 T18887 T18885 arg2Of ransfectio,a c
R13395 T18887 T18886 arg1Of ransfectio,ontrol for t

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18716 636-640 Protein denotes Sox6
T18715 561-563 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18888 636-640 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T18703 391-396 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T18702 174-179 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T18710 437-443 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T18720 405-410 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18719 310-315 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18718 21-25 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T18709 674-813 Sentence denotes In assays of dosage effect, we used 200 ng, 500 ng, and 1000 ng). pRL-CMV 15ng (Promega) was used as a control for transfection efficiency.
T18708 533-673 Sentence denotes Cells were transfected with ɛy promoter reporter constructs (500 ng) along with either empty vector or Sox6 overexpression vector (1000 ng).
T18707 399-532 Sentence denotes GM979 cells (4 × 105) in log phase of growth were transfected with plasmids by FuGENE6 (Roche, Indianapolis, Indiana, United States).
T18706 306-398 Sentence denotes MEL cells were cultured in DMEM supplemented as above (without heat inactivating the serum).
T18705 0-305 Sentence denotes GM979 cells (Coriell Cell Repositories, Camden, New Jersey, United States) were cultured in Ham's F12 with 2 mM L-glutamine supplemented with heat-inactivated 10% fetal calf serum (Ivitrogen, Carlsbad, California, United States), penicillin (100 units/ml), streptomycin 100 μg/ml), and L-glutamine (2 mM).
T302 0-305 Sentence denotes GM979 cells (Coriell Cell Repositories, Camden, New Jersey, United States) were cultured in Ham's F12 with 2 mM L-glutamine supplemented with heat-inactivated 10% fetal calf serum (Ivitrogen, Carlsbad, California, United States), penicillin (100 units/ml), streptomycin 100 μg/ml), and L-glutamine (2 mM).
T303 306-398 Sentence denotes MEL cells were cultured in DMEM supplemented as above (without heat inactivating the serum).
T304 399-532 Sentence denotes GM979 cells (4 × 105) in log phase of growth were transfected with plasmids by FuGENE6 (Roche, Indianapolis, Indiana, United States).
T305 533-673 Sentence denotes Cells were transfected with ɛy promoter reporter constructs (500 ng) along with either empty vector or Sox6 overexpression vector (1000 ng).
T306 674-813 Sentence denotes In assays of dosage effect, we used 200 ng, 500 ng, and 1000 ng). pRL-CMV 15ng (Promega) was used as a control for transfection efficiency.

simple1

Id Subject Object Predicate Lexical cue
T18722 636-640 Protein denotes Sox6
T18721 561-563 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19096 641-655 Gene_expression denotes overexpression
T19095 636-640 Protein denotes Sox6
T19094 561-563 Protein denotes ɛy
R13574 T19095 T19096 themeOf Sox6,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18891 641-655 Gene_expression denotes overexpression
T18890 636-640 Protein denotes Sox6
T18889 561-563 Protein denotes ɛy
R13396 T18890 T18891 themeOf Sox6,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T18898 641-655 Gene_expression denotes overexpression
T18897 636-640 Protein denotes Sox6
T18896 561-563 Protein denotes ɛy
R13397 T18897 T18898 themeOf Sox6,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19093 636-662 Gene_expression denotes Sox6 overexpression vector
T19092 636-662 Positive_regulation denotes Sox6 overexpression vector
T19091 230-240 Entity denotes penicillin
T19090 257-269 Entity denotes streptomycin
T19089 636-640 Protein denotes Sox6
T19088 92-146 Protein denotes Ham's F12 with 2 mM L-glutamine supplemented with heat
T19087 399-410 Entity denotes GM979 cells
T19086 0-11 Entity denotes GM979 cells
T19085 286-304 Entity denotes L-glutamine (2 mM)
T19084 533-538 Entity denotes Cells
T19083 564-572 Entity denotes promoter
T19082 677-700 Entity denotes assays of dosage effect
T19081 310-315 Entity denotes cells
T19080 107-123 Entity denotes 2 mM L-glutamine
T19079 21-25 Entity denotes Cell
T19078 740-743 Protein denotes pRL
T19077 556-563 Protein denotes with ɛy
R13572 T19089 T19092 themeOf Sox6,Sox6 overexpression vector
R13573 T19089 T19093 themeOf Sox6,Sox6 overexpression vector

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19074 812-813 . denotes .
T19073 802-812 NN denotes efficiency
T19072 789-801 NN denotes transfection
T19071 785-788 IN denotes for
T19070 777-784 NN denotes control
T19069 775-776 DT denotes a
T19068 772-774 IN denotes as
T19067 767-771 VBN denotes used
T19066 763-766 VBD denotes was
T19065 761-762 -RRB- denotes )
T19064 754-761 NNP denotes Promega
T19063 753-754 -LRB- denotes (
T19062 748-752 JJ denotes 15ng
T19061 740-747 JJ denotes pRL-CMV
T19060 738-739 . denotes .
T19059 737-738 -RRB- denotes )
T19058 735-737 NN denotes ng
T19051 714-716 NN denotes ng
T19050 710-713 CD denotes 200
T19049 705-709 VBD denotes used
T19036 656-662 NN denotes vector
T19035 641-655 NN denotes overexpression
T19034 636-640 JJ denotes Sox6
T19033 633-635 CC denotes or
T19032 626-632 NN denotes vector
T19031 620-625 JJ denotes empty
T19030 613-619 DT denotes either
T19029 608-612 IN denotes with
T19028 602-607 IN denotes along
T19027 600-601 -RRB- denotes )
T19026 598-600 NN denotes ng
T19025 594-597 CD denotes 500
T19024 593-594 -LRB- denotes (
T19023 582-592 NNS denotes constructs
T19022 573-581 NN denotes reporter
T19021 564-572 NN denotes promoter
T19020 561-563 JJ denotes ɛy
T19019 556-560 IN denotes with
T19018 544-555 VBN denotes transfected
T19017 539-543 VBD denotes were
T19016 533-538 NNS denotes Cells
T19015 531-532 . denotes .
T19014 530-531 -RRB- denotes )
T19013 524-530 NNPS denotes States
T19012 517-523 NNP denotes United
T19011 515-516 , denotes ,
T19010 508-515 NNP denotes Indiana
T19009 506-507 , denotes ,
T19008 494-506 NNP denotes Indianapolis
T19007 492-493 , denotes ,
T19006 487-492 NNP denotes Roche
T19005 486-487 -LRB- denotes (
T19004 478-485 NNP denotes FuGENE6
T19003 475-477 IN denotes by
T19002 466-474 NNS denotes plasmids
T19001 461-465 IN denotes with
T19000 449-460 VBN denotes transfected
T18999 444-448 VBD denotes were
T18998 437-443 NN denotes growth
T18997 434-436 IN denotes of
T18996 428-433 NN denotes phase
T18995 424-427 VB denotes log
T18994 421-423 IN denotes in
T18993 419-420 -RRB- denotes )
T18992 416-419 CD denotes 105
T18991 414-415 CD denotes ×
T18990 412-413 CD denotes 4
T18989 411-412 -LRB- denotes (
T18988 405-410 NNS denotes cells
T18987 399-404 CD denotes GM979
T18986 397-398 . denotes .
T18985 396-397 -RRB- denotes )
T18984 391-396 NN denotes serum
T18983 387-390 DT denotes the
T18982 374-386 VBG denotes inactivating
T18981 369-373 NN denotes heat
T18980 361-368 IN denotes without
T18979 360-361 -LRB- denotes (
T18978 354-359 IN denotes above
T18977 351-353 IN denotes as
T18976 338-350 VBD denotes supplemented
T18975 333-337 NNP denotes DMEM
T18974 330-332 IN denotes in
T18973 321-329 VBN denotes cultured
T18972 316-320 VBD denotes were
T18971 310-315 NNS denotes cells
T18970 306-309 NNP denotes MEL
T18969 304-305 . denotes .
T18968 303-304 -RRB- denotes )
T18967 301-303 NNP denotes mM
T18966 299-300 CD denotes 2
T18965 298-299 -LRB- denotes (
T18964 286-297 NNP denotes L-glutamine
T18963 282-285 CC denotes and
T18962 280-281 , denotes ,
T18961 279-280 -RRB- denotes )
T18960 277-279 NN denotes ml
T18959 276-277 NN denotes /
T18958 274-276 NN denotes μg
T18957 270-273 CD denotes 100
T18956 257-269 NNP denotes streptomycin
T18955 255-256 , denotes ,
T18954 254-255 -RRB- denotes )
T18953 246-254 NN denotes units/ml
T18952 242-245 CD denotes 100
T18951 241-242 -LRB- denotes (
T18950 230-240 NN denotes penicillin
T18949 228-229 , denotes ,
T18948 227-228 -RRB- denotes )
T18947 221-227 NNPS denotes States
T18946 214-220 NNP denotes United
T18945 212-213 , denotes ,
T18944 202-212 NNP denotes California
T18943 200-201 , denotes ,
T18942 192-200 NNP denotes Carlsbad
T18941 190-191 , denotes ,
T18940 181-190 NNP denotes Ivitrogen
T18939 180-181 -LRB- denotes (
T18938 174-179 NN denotes serum
T18937 169-173 NN denotes calf
T18936 163-168 JJ denotes fetal
T18935 161-162 NN denotes %
T18934 159-161 CD denotes 10
T18933 142-158 JJ denotes heat-inactivated
T18932 137-141 IN denotes with
T18931 124-136 VBD denotes supplemented
T18930 112-123 NNP denotes L-glutamine
T18929 109-111 NNP denotes mM
T18928 107-108 CD denotes 2
T18927 102-106 IN denotes with
T18926 98-101 CD denotes F12
T18925 95-97 POS denotes 's
T18924 92-95 NNP denotes Ham
T18923 89-91 IN denotes in
T18922 80-88 VBN denotes cultured
T18921 75-79 VBD denotes were
T18920 73-74 -RRB- denotes )
T18919 67-73 NNPS denotes States
T18918 60-66 NNP denotes United
T18917 58-59 , denotes ,
T18916 52-58 NNP denotes Jersey
T18915 48-51 NNP denotes New
T18914 46-47 , denotes ,
T18913 40-46 NNP denotes Camden
T18912 38-39 , denotes ,
T18911 26-38 NNPS denotes Repositories
T18910 21-25 NNP denotes Cell
T18909 13-20 NNP denotes Coriell
T18908 12-13 -LRB- denotes (
T18907 6-11 NNS denotes cells
T18906 0-5 CD denotes GM979
T19057 730-734 CD denotes 1000
T19056 726-729 CC denotes and
T19055 724-725 , denotes ,
T19054 722-724 NN denotes ng
T19053 718-721 CD denotes 500
T19052 716-717 , denotes ,
T19048 702-704 PRP denotes we
T19047 700-701 , denotes ,
T19046 694-700 NN denotes effect
T19045 687-693 NN denotes dosage
T19044 684-686 IN denotes of
T19043 677-683 NNS denotes assays
T19042 674-676 IN denotes In
T19041 672-673 . denotes .
T19040 671-672 -RRB- denotes )
T19039 669-671 NN denotes ng
T19038 664-668 CD denotes 1000
T19037 663-664 -LRB- denotes (
R13403 T18906 T18907 nummod GM979,cells
R13404 T18907 T18922 nsubjpass cells,cultured
R13405 T18908 T18907 punct (,cells
R13406 T18909 T18911 compound Coriell,Repositories
R13407 T18910 T18911 compound Cell,Repositories
R13408 T18911 T18907 appos Repositories,cells
R13409 T18912 T18911 punct ",",Repositories
R13410 T18913 T18911 conj Camden,Repositories
R13411 T18914 T18913 punct ",",Camden
R13412 T18915 T18916 compound New,Jersey
R13413 T18916 T18913 conj Jersey,Camden
R13414 T18917 T18916 punct ",",Jersey
R13415 T18918 T18919 compound United,States
R13416 T18919 T18916 appos States,Jersey
R13417 T18920 T18916 punct ),Jersey
R13418 T18921 T18922 auxpass were,cultured
R13419 T18922 T18922 ROOT cultured,cultured
R13420 T18923 T18922 prep in,cultured
R13421 T18924 T18926 poss Ham,F12
R13422 T18925 T18924 case 's,Ham
R13423 T18926 T18923 pobj F12,in
R13424 T18927 T18931 mark with,supplemented
R13425 T18928 T18930 nummod 2,L-glutamine
R13426 T18929 T18930 compound mM,L-glutamine
R13427 T18930 T18931 nsubj L-glutamine,supplemented
R13428 T18931 T18922 advcl supplemented,cultured
R13429 T18932 T18931 prep with,supplemented
R13430 T18933 T18938 amod heat-inactivated,serum
R13431 T18934 T18935 nummod 10,%
R13432 T18935 T18938 compound %,serum
R13433 T18936 T18937 amod fetal,calf
R13434 T18937 T18938 compound calf,serum
R13435 T18938 T18932 pobj serum,with
R13436 T18939 T18938 punct (,serum
R13437 T18940 T18968 nmod Ivitrogen,)
R13438 T18941 T18940 punct ",",Ivitrogen
R13439 T18942 T18940 conj Carlsbad,Ivitrogen
R13440 T18943 T18942 punct ",",Carlsbad
R13441 T18944 T18942 conj California,Carlsbad
R13442 T18945 T18944 punct ",",California
R13443 T18946 T18947 compound United,States
R13444 T18947 T18944 conj States,California
R13445 T18948 T18944 punct ),California
R13446 T18949 T18940 punct ",",Ivitrogen
R13447 T18950 T18967 nmod penicillin,mM
R13448 T18951 T18953 punct (,units/ml
R13449 T18952 T18953 nummod 100,units/ml
R13450 T18953 T18950 appos units/ml,penicillin
R13451 T18954 T18953 punct ),units/ml
R13452 T18955 T18950 punct ",",penicillin
R13453 T18956 T18960 nmod streptomycin,ml
R13454 T18957 T18956 nummod 100,streptomycin
R13455 T18958 T18960 compound μg,ml
R13456 T18959 T18960 compound /,ml
R13457 T18960 T18950 appos ml,penicillin
R13458 T18961 T18960 punct ),ml
R13459 T18962 T18950 punct ",",penicillin
R13460 T18963 T18950 cc and,penicillin
R13461 T18964 T18950 conj L-glutamine,penicillin
R13462 T18965 T18966 punct (,2
R13463 T18966 T18967 nummod 2,mM
R13464 T18967 T18940 appos mM,Ivitrogen
R13465 T18968 T18938 punct ),serum
R13466 T18969 T18922 punct .,cultured
R13467 T18970 T18971 compound MEL,cells
R13468 T18971 T18976 nsubjpass cells,supplemented
R13469 T18972 T18976 auxpass were,supplemented
R13470 T18973 T18972 acomp cultured,were
R13471 T18974 T18973 prep in,cultured
R13472 T18975 T18974 pobj DMEM,in
R13473 T18976 T18976 ROOT supplemented,supplemented
R13474 T18977 T18976 prep as,supplemented
R13475 T18978 T18977 prep above,as
R13476 T18979 T18978 punct (,above
R13477 T18980 T18978 prep without,above
R13478 T18981 T18980 pobj heat,without
R13479 T18982 T18978 pcomp inactivating,above
R13480 T18983 T18984 det the,serum
R13481 T18984 T18982 dobj serum,inactivating
R13482 T18985 T18977 punct ),as
R13483 T18986 T18976 punct .,supplemented
R13484 T18987 T18988 nummod GM979,cells
R13485 T18988 T19000 nsubjpass cells,transfected
R13486 T18989 T18988 punct (,cells
R13487 T18990 T18992 nummod 4,105
R13488 T18991 T18992 nummod ×,105
R13489 T18992 T18988 appos 105,cells
R13490 T18993 T18988 punct ),cells
R13491 T18994 T18988 prep in,cells
R13492 T18995 T18996 compound log,phase
R13493 T18996 T18994 pobj phase,in
R13494 T18997 T18996 prep of,phase
R13495 T18998 T18997 pobj growth,of
R13496 T18999 T19000 auxpass were,transfected
R13497 T19000 T19000 ROOT transfected,transfected
R13498 T19001 T19000 prep with,transfected
R13499 T19002 T19001 pobj plasmids,with
R13500 T19003 T19000 agent by,transfected
R13501 T19004 T19003 pobj FuGENE6,by
R13502 T19005 T19006 punct (,Roche
R13503 T19006 T19004 appos Roche,FuGENE6
R13504 T19007 T19006 punct ",",Roche
R13505 T19008 T19013 nmod Indianapolis,States
R13506 T19009 T19008 punct ",",Indianapolis
R13507 T19010 T19008 conj Indiana,Indianapolis
R13508 T19011 T19010 punct ",",Indiana
R13509 T19012 T19013 compound United,States
R13510 T19013 T19006 conj States,Roche
R13511 T19014 T19006 punct ),Roche
R13512 T19015 T19000 punct .,transfected
R13513 T19016 T19018 nsubjpass Cells,transfected
R13514 T19017 T19018 auxpass were,transfected
R13515 T19018 T19018 ROOT transfected,transfected
R13516 T19019 T19018 prep with,transfected
R13517 T19020 T19022 amod ɛy,reporter
R13518 T19021 T19022 compound promoter,reporter
R13519 T19022 T19023 compound reporter,constructs
R13520 T19023 T19019 pobj constructs,with
R13521 T19024 T19023 punct (,constructs
R13522 T19025 T19026 nummod 500,ng
R13523 T19026 T19023 appos ng,constructs
R13524 T19027 T19023 punct ),constructs
R13525 T19028 T19018 prep along,transfected
R13526 T19029 T19028 prep with,along
R13527 T19030 T19032 preconj either,vector
R13528 T19031 T19032 amod empty,vector
R13529 T19032 T19029 pobj vector,with
R13530 T19033 T19032 cc or,vector
R13531 T19034 T19036 amod Sox6,vector
R13532 T19035 T19036 compound overexpression,vector
R13533 T19036 T19032 conj vector,vector
R13534 T19037 T19036 punct (,vector
R13535 T19038 T19039 nummod 1000,ng
R13536 T19039 T19036 appos ng,vector
R13537 T19040 T19036 punct ),vector
R13538 T19041 T19018 punct .,transfected
R13539 T19042 T19049 prep In,used
R13540 T19043 T19042 pobj assays,In
R13541 T19044 T19043 prep of,assays
R13542 T19045 T19046 compound dosage,effect
R13543 T19046 T19044 pobj effect,of
R13544 T19047 T19049 punct ",",used
R13545 T19048 T19049 nsubj we,used
R13546 T19049 T19049 ROOT used,used
R13547 T19050 T19051 nummod 200,ng
R13548 T19051 T19049 dobj ng,used
R13549 T19052 T19051 punct ",",ng
R13550 T19053 T19054 nummod 500,ng
R13551 T19054 T19051 appos ng,ng
R13552 T19055 T19054 punct ",",ng
R13553 T19056 T19054 cc and,ng
R13554 T19057 T19058 nummod 1000,ng
R13555 T19058 T19054 conj ng,ng
R13556 T19059 T19051 punct ),ng
R13557 T19060 T19049 punct .,used
R13558 T19061 T19062 amod pRL-CMV,15ng
R13559 T19062 T19067 nsubjpass 15ng,used
R13560 T19063 T19064 punct (,Promega
R13561 T19064 T19062 appos Promega,15ng
R13562 T19065 T19064 punct ),Promega
R13563 T19066 T19067 auxpass was,used
R13564 T19067 T19067 ROOT used,used
R13565 T19068 T19067 prep as,used
R13566 T19069 T19070 det a,control
R13567 T19070 T19068 pobj control,as
R13568 T19071 T19070 prep for,control
R13569 T19072 T19073 compound transfection,efficiency
R13570 T19073 T19071 pobj efficiency,for
R13571 T19074 T19067 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18895 636-640 Protein denotes Sox6
T18894 478-485 Protein denotes FuGENE6

testone

Id Subject Object Predicate Lexical cue
T18697 636-640 Protein denotes Sox6
T18696 561-563 Protein denotes ɛy

test3

Id Subject Object Predicate Lexical cue
T18701 636-640 Protein denotes Sox6
T18700 561-563 Protein denotes ɛy
T18699 636-640 Protein denotes Sox6
T18698 561-563 Protein denotes ɛy