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PMC:1359074 / 39400-40244 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18887 821-831 NN denotes ransfectio
T18886 809-821 NN denotes ontrol for t
T18885 806-809 IN denotes a c
T18884 799-806 NN denotes sed as
T18883 798-799 DT denotes u
T18882 796-798 IN denotes s
T18881 792-796 VB denotes ) wa
T18880 789-792 VB denotes ega
T18879 788-789 -RRB- denotes m
T18878 781-788 NN denotes ng (Pro
T18877 780-781 -LRB- denotes 5
T18876 776-780 NN denotes MV 1
T18875 769-776 NN denotes . pRL-C
T18874 768-769 -RRB- denotes )
T18873 766-768 NN denotes ng
T18872 761-765 CD denotes 1000
T18871 757-760 CC denotes and
T18870 755-756 -COMMA- denotes ,
T18869 753-755 NN denotes ng
T18868 749-752 CD denotes 500
T18867 747-748 -COMMA- denotes ,
T18866 745-747 NN denotes ng
T18865 741-744 CD denotes 200
T18864 736-740 VB denotes used
T18863 733-735 PRP denotes we
T18862 731-732 -COMMA- denotes ,
T18861 725-731 NN denotes effect
T18860 718-724 NN denotes dosage
T18859 715-717 IN denotes of
T18858 708-714 NN denotes assays
T18857 705-707 IN denotes In
T18856 702-703 -RRB- denotes )
T18855 700-702 NN denotes ng
T18854 695-699 CD denotes 1000
T18853 694-695 -LRB- denotes (
T18852 687-693 NN denotes vector
T18851 672-686 NN denotes overexpression
T18850 667-671 NN denotes Sox6
T18849 664-666 CC denotes or
T18848 657-663 NN denotes vector
T18847 651-656 JJ denotes empty
T18846 644-650 CC denotes either
T18845 639-643 IN denotes with
T18844 633-638 IN denotes along
T18843 631-632 -RRB- denotes )
T18842 629-631 NN denotes ng
T18841 625-628 CD denotes 500
T18840 624-625 -LRB- denotes (
T18839 613-623 NN denotes constructs
T18838 604-612 NN denotes reporter
T18837 595-603 NN denotes promoter
T18836 592-594 JJ denotes ɛy
T18785 330-331 CD denotes 2
T18784 329-330 -LRB- denotes (
T18783 317-328 NN denotes L-glutamine
T18782 313-316 CC denotes and
T18781 311-312 -COMMA- denotes ,
T18780 310-311 -RRB- denotes )
T18779 305-310 NN denotes μg/ml
T18778 301-304 CD denotes 100
T18777 288-300 NN denotes streptomycin
T18776 286-287 -COMMA- denotes ,
T18775 285-286 -RRB- denotes )
T18774 277-285 NN denotes units/ml
T18773 273-276 CD denotes 100
T18772 272-273 -LRB- denotes (
T18771 261-271 NN denotes penicillin
T18770 259-260 -COMMA- denotes ,
T18769 258-259 -RRB- denotes )
T18768 252-258 NNP denotes States
T18767 245-251 NNP denotes United
T18766 243-244 -COMMA- denotes ,
T18765 233-243 NNP denotes California
T18764 231-232 -COMMA- denotes ,
T18763 223-231 NNP denotes Carlsbad
T18762 221-222 -COMMA- denotes ,
T18761 212-221 NN denotes Ivitrogen
T18760 211-212 -LRB- denotes (
T18759 205-210 NN denotes serum
T18758 200-204 NN denotes calf
T18757 194-199 JJ denotes fetal
T18756 192-193 NN denotes %
T18755 190-192 CD denotes 10
T18754 173-189 JJ denotes heat-inactivated
T18753 168-172 IN denotes with
T18752 155-167 VB denotes supplemented
T18751 143-154 NN denotes L-glutamine
T18750 140-142 NN denotes mM
T18749 138-139 CD denotes 2
T18748 133-137 IN denotes with
T18747 129-132 NN denotes F12
T18746 126-128 POS denotes 's
T18745 123-126 NNP denotes Ham
T18744 120-122 IN denotes in
T18743 111-119 VB denotes cultured
T18742 106-110 VB denotes were
T18741 104-105 -RRB- denotes )
T18740 98-104 NNP denotes States
T18739 91-97 NNP denotes United
T18738 89-90 -COMMA- denotes ,
T18737 83-89 NNP denotes Jersey
T18736 79-82 NNP denotes New
T18735 77-78 -COMMA- denotes ,
T18734 71-77 NNP denotes Camden
T18733 69-70 -COMMA- denotes ,
T18732 57-69 NNP denotes Repositories
T18731 52-56 NNP denotes Cell
T18730 44-51 NNP denotes Coriell
T18729 43-44 -LRB- denotes (
T18728 37-42 NN denotes cells
T18727 31-36 NN denotes GM979
T18726 17-29 NN denotes transfection
T18725 13-16 CC denotes and
T18724 5-12 NN denotes culture
T18723 0-4 NN denotes Cell
T18835 587-591 IN denotes with
T18834 575-586 VB denotes transfected
T18833 570-574 VB denotes were
T18832 564-569 NN denotes Cells
T18831 561-562 -RRB- denotes )
T18830 555-561 NNP denotes States
T18829 548-554 NNP denotes United
T18828 546-547 -COMMA- denotes ,
T18827 539-546 NNP denotes Indiana
T18826 537-538 -COMMA- denotes ,
T18825 525-537 NNP denotes Indianapolis
T18824 523-524 -COMMA- denotes ,
T18823 518-523 NNP denotes Roche
T18822 517-518 -LRB- denotes (
T18821 509-516 NN denotes FuGENE6
T18820 506-508 IN denotes by
T18819 497-505 NN denotes plasmids
T18818 492-496 IN denotes with
T18817 480-491 VB denotes transfected
T18816 475-479 VB denotes were
T18815 468-474 NN denotes growth
T18814 465-467 IN denotes of
T18813 459-464 NN denotes phase
T18812 455-458 NN denotes log
T18811 452-454 IN denotes in
T18810 450-451 -RRB- denotes )
T18809 447-450 CD denotes 105
T18808 445-446 NN denotes ×
T18807 443-444 CD denotes 4
T18806 442-443 -LRB- denotes (
T18805 436-441 NN denotes cells
T18804 430-435 NN denotes GM979
T18803 427-428 -RRB- denotes )
T18802 422-427 NN denotes serum
T18801 418-421 DT denotes the
T18800 405-417 VB denotes inactivating
T18799 400-404 NN denotes heat
T18798 392-399 IN denotes without
T18797 391-392 -LRB- denotes (
T18796 385-390 JJ denotes above
T18795 382-384 IN denotes as
T18794 369-381 VB denotes supplemented
T18793 364-368 NN denotes DMEM
T18792 361-363 IN denotes in
T18791 352-360 VB denotes cultured
T18790 347-351 VB denotes were
T18789 341-346 NN denotes cells
T18788 337-340 NN denotes MEL
T18787 334-335 -RRB- denotes )
T18786 332-334 NN denotes mM
R13227 T18724 T18725 arg1Of culture,and
R13228 T18725 T18723 arg1Of and,Cell
R13229 T18726 T18725 arg2Of transfection,and
R13230 T18728 T18727 arg1Of cells,GM979
R13231 T18728 T18729 arg1Of cells,(
R13232 T18728 T18742 arg1Of cells,were
R13233 T18728 T18743 arg2Of cells,cultured
R13234 T18732 T18730 arg1Of Repositories,Coriell
R13235 T18732 T18731 arg1Of Repositories,Cell
R13236 T18732 T18733 arg1Of Repositories,","
R13237 T18733 T18735 arg1Of ",",","
R13238 T18734 T18733 arg2Of Camden,","
R13239 T18736 T18735 arg2Of New,","
R13240 T18737 T18729 arg2Of Jersey,(
R13241 T18737 T18732 arg1Of Jersey,Repositories
R13242 T18737 T18734 arg1Of Jersey,Camden
R13243 T18737 T18736 arg1Of Jersey,New
R13244 T18737 T18738 arg1Of Jersey,","
R13245 T18740 T18738 arg2Of States,","
R13246 T18740 T18739 arg1Of States,United
R13247 T18741 T18729 arg3Of ),(
R13248 T18743 T18742 arg2Of cultured,were
R13249 T18743 T18744 arg1Of cultured,in
R13250 T18745 T18746 arg2Of Ham,'s
R13251 T18747 T18744 arg2Of F12,in
R13252 T18747 T18746 arg1Of F12,'s
R13253 T18747 T18748 arg1Of F12,with
R13254 T18749 T18750 arg1Of 2,mM
R13255 T18751 T18748 arg2Of L-glutamine,with
R13256 T18751 T18749 arg1Of L-glutamine,2
R13257 T18751 T18752 arg2Of L-glutamine,supplemented
R13258 T18752 T18753 arg1Of supplemented,with
R13259 T18755 T18756 arg1Of 10,%
R13260 T18759 T18754 arg1Of serum,heat-inactivated
R13261 T18759 T18755 arg1Of serum,10
R13262 T18759 T18757 arg1Of serum,fetal
R13263 T18759 T18758 arg1Of serum,calf
R13264 T18759 T18760 arg1Of serum,(
R13265 T18759 T18782 arg1Of serum,and
R13266 T18761 T18762 arg1Of Ivitrogen,","
R13267 T18762 T18764 arg1Of ",",","
R13268 T18763 T18762 arg2Of Carlsbad,","
R13269 T18764 T18766 arg1Of ",",","
R13270 T18765 T18764 arg2Of California,","
R13271 T18766 T18769 arg1Of ",",)
R13272 T18766 T18770 arg1Of ",",","
R13273 T18768 T18766 arg2Of States,","
R13274 T18768 T18767 arg1Of States,United
R13275 T18770 T18776 arg1Of ",",","
R13276 T18771 T18770 arg2Of penicillin,","
R13277 T18771 T18772 arg1Of penicillin,(
R13278 T18774 T18772 arg2Of units/ml,(
R13279 T18774 T18773 arg1Of units/ml,100
R13280 T18775 T18772 arg3Of ),(
R13281 T18776 T18760 arg2Of ",",(
R13282 T18779 T18776 arg2Of μg/ml,","
R13283 T18779 T18777 arg1Of μg/ml,streptomycin
R13284 T18779 T18778 arg1Of μg/ml,100
R13285 T18780 T18760 arg3Of ),(
R13286 T18782 T18753 arg2Of and,with
R13287 T18782 T18781 arg1Of and,","
R13288 T18783 T18782 arg2Of L-glutamine,and
R13289 T18783 T18784 arg1Of L-glutamine,(
R13290 T18786 T18784 arg2Of mM,(
R13291 T18786 T18785 arg1Of mM,2
R13292 T18787 T18784 arg3Of ),(
R13293 T18789 T18788 arg1Of cells,MEL
R13294 T18789 T18790 arg1Of cells,were
R13295 T18789 T18791 arg2Of cells,cultured
R13296 T18791 T18790 arg2Of cultured,were
R13297 T18791 T18792 arg1Of cultured,in
R13298 T18793 T18792 arg2Of DMEM,in
R13299 T18793 T18794 arg2Of DMEM,supplemented
R13300 T18794 T18795 arg1Of supplemented,as
R13301 T18794 T18797 arg1Of supplemented,(
R13302 T18796 T18795 arg2Of above,as
R13303 T18798 T18797 arg2Of without,(
R13304 T18799 T18798 arg2Of heat,without
R13305 T18799 T18800 arg1Of heat,inactivating
R13306 T18802 T18800 arg2Of serum,inactivating
R13307 T18802 T18801 arg1Of serum,the
R13308 T18803 T18797 arg3Of ),(
R13309 T18805 T18804 arg1Of cells,GM979
R13310 T18805 T18806 arg1Of cells,(
R13311 T18805 T18811 arg1Of cells,in
R13312 T18805 T18816 arg1Of cells,were
R13313 T18805 T18817 arg2Of cells,transfected
R13314 T18808 T18806 arg2Of ×,(
R13315 T18808 T18807 arg1Of ×,4
R13316 T18808 T18809 arg1Of ×,105
R13317 T18810 T18806 arg3Of ),(
R13318 T18813 T18811 arg2Of phase,in
R13319 T18813 T18812 arg1Of phase,log
R13320 T18813 T18814 arg1Of phase,of
R13321 T18815 T18814 arg2Of growth,of
R13322 T18817 T18816 arg2Of transfected,were
R13323 T18817 T18818 arg1Of transfected,with
R13324 T18817 T18820 arg1Of transfected,by
R13325 T18817 T18822 arg1Of transfected,(
R13326 T18819 T18818 arg2Of plasmids,with
R13327 T18821 T18820 arg2Of FuGENE6,by
R13328 T18823 T18824 arg1Of Roche,","
R13329 T18824 T18826 arg1Of ",",","
R13330 T18825 T18824 arg2Of Indianapolis,","
R13331 T18826 T18828 arg1Of ",",","
R13332 T18827 T18826 arg2Of Indiana,","
R13333 T18829 T18828 arg2Of United,","
R13334 T18830 T18822 arg2Of States,(
R13335 T18830 T18823 arg1Of States,Roche
R13336 T18830 T18825 arg1Of States,Indianapolis
R13337 T18830 T18827 arg1Of States,Indiana
R13338 T18830 T18829 arg1Of States,United
R13339 T18831 T18822 arg3Of ),(
R13340 T18832 T18833 arg1Of Cells,were
R13341 T18832 T18834 arg2Of Cells,transfected
R13342 T18834 T18833 arg2Of transfected,were
R13343 T18834 T18835 arg1Of transfected,with
R13344 T18834 T18844 arg1Of transfected,along
R13345 T18839 T18835 arg2Of constructs,with
R13346 T18839 T18836 arg1Of constructs,ɛy
R13347 T18839 T18837 arg1Of constructs,promoter
R13348 T18839 T18838 arg1Of constructs,reporter
R13349 T18839 T18840 arg1Of constructs,(
R13350 T18842 T18840 arg2Of ng,(
R13351 T18842 T18841 arg1Of ng,500
R13352 T18843 T18840 arg3Of ),(
R13353 T18844 T18845 arg1Of along,with
R13354 T18848 T18847 arg1Of vector,empty
R13355 T18848 T18849 arg1Of vector,or
R13356 T18849 T18845 arg2Of or,with
R13357 T18849 T18846 arg1Of or,either
R13358 T18852 T18849 arg2Of vector,or
R13359 T18852 T18850 arg1Of vector,Sox6
R13360 T18852 T18851 arg1Of vector,overexpression
R13361 T18852 T18853 arg1Of vector,(
R13362 T18855 T18853 arg2Of ng,(
R13363 T18855 T18854 arg1Of ng,1000
R13364 T18856 T18853 arg3Of ),(
R13365 T18858 T18857 arg2Of assays,In
R13366 T18858 T18859 arg1Of assays,of
R13367 T18861 T18859 arg2Of effect,of
R13368 T18861 T18860 arg1Of effect,dosage
R13369 T18863 T18864 arg1Of we,used
R13370 T18864 T18857 arg1Of used,In
R13371 T18864 T18862 arg1Of used,","
R13372 T18866 T18865 arg1Of ng,200
R13373 T18866 T18867 arg1Of ng,","
R13374 T18867 T18871 arg1Of ",",and
R13375 T18869 T18867 arg2Of ng,","
R13376 T18869 T18868 arg1Of ng,500
R13377 T18871 T18864 arg2Of and,used
R13378 T18871 T18870 arg1Of and,","
R13379 T18871 T18874 arg1Of and,)
R13380 T18871 T18880 modOf and,ega
R13381 T18873 T18871 arg2Of ng,and
R13382 T18873 T18872 arg1Of ng,1000
R13383 T18876 T18875 arg1Of MV 1,. pRL-C
R13384 T18876 T18877 arg1Of MV 1,5
R13385 T18876 T18880 arg1Of MV 1,ega
R13386 T18876 T18881 arg2Of MV 1,) wa
R13387 T18878 T18877 arg2Of ng (Pro,5
R13388 T18879 T18877 arg3Of m,5
R13389 T18881 T18880 arg2Of ) wa,ega
R13390 T18881 T18882 arg1Of ) wa,s
R13391 T18884 T18882 arg2Of sed as ,s
R13392 T18884 T18883 arg1Of sed as ,u
R13393 T18884 T18885 arg1Of sed as ,a c
R13394 T18887 T18885 arg2Of ransfectio,a c
R13395 T18887 T18886 arg1Of ransfectio,ontrol for t

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18716 667-671 Protein denotes Sox6
T18715 592-594 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18888 667-671 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T18703 422-427 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T18702 205-210 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T18710 468-474 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T18720 436-441 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18719 341-346 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18718 52-56 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T18717 0-4 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T18709 705-844 Sentence denotes In assays of dosage effect, we used 200 ng, 500 ng, and 1000 ng). pRL-CMV 15ng (Promega) was used as a control for transfection efficiency.
T18708 564-704 Sentence denotes Cells were transfected with ɛy promoter reporter constructs (500 ng) along with either empty vector or Sox6 overexpression vector (1000 ng).
T18707 430-563 Sentence denotes GM979 cells (4 × 105) in log phase of growth were transfected with plasmids by FuGENE6 (Roche, Indianapolis, Indiana, United States).
T18706 337-429 Sentence denotes MEL cells were cultured in DMEM supplemented as above (without heat inactivating the serum).
T18705 31-336 Sentence denotes GM979 cells (Coriell Cell Repositories, Camden, New Jersey, United States) were cultured in Ham's F12 with 2 mM L-glutamine supplemented with heat-inactivated 10% fetal calf serum (Ivitrogen, Carlsbad, California, United States), penicillin (100 units/ml), streptomycin 100 μg/ml), and L-glutamine (2 mM).
T18704 0-30 Sentence denotes Cell culture and transfection.
T301 0-30 Sentence denotes Cell culture and transfection.
T302 31-336 Sentence denotes GM979 cells (Coriell Cell Repositories, Camden, New Jersey, United States) were cultured in Ham's F12 with 2 mM L-glutamine supplemented with heat-inactivated 10% fetal calf serum (Ivitrogen, Carlsbad, California, United States), penicillin (100 units/ml), streptomycin 100 μg/ml), and L-glutamine (2 mM).
T303 337-429 Sentence denotes MEL cells were cultured in DMEM supplemented as above (without heat inactivating the serum).
T304 430-563 Sentence denotes GM979 cells (4 × 105) in log phase of growth were transfected with plasmids by FuGENE6 (Roche, Indianapolis, Indiana, United States).
T305 564-704 Sentence denotes Cells were transfected with ɛy promoter reporter constructs (500 ng) along with either empty vector or Sox6 overexpression vector (1000 ng).
T306 705-844 Sentence denotes In assays of dosage effect, we used 200 ng, 500 ng, and 1000 ng). pRL-CMV 15ng (Promega) was used as a control for transfection efficiency.

simple1

Id Subject Object Predicate Lexical cue
T18722 667-671 Protein denotes Sox6
T18721 592-594 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19096 672-686 Gene_expression denotes overexpression
T19095 667-671 Protein denotes Sox6
T19094 592-594 Protein denotes ɛy
R13574 T19095 T19096 themeOf Sox6,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18891 672-686 Gene_expression denotes overexpression
T18890 667-671 Protein denotes Sox6
T18889 592-594 Protein denotes ɛy
R13396 T18890 T18891 themeOf Sox6,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T18898 672-686 Gene_expression denotes overexpression
T18897 667-671 Protein denotes Sox6
T18896 592-594 Protein denotes ɛy
R13397 T18897 T18898 themeOf Sox6,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19093 667-693 Gene_expression denotes Sox6 overexpression vector
T19092 667-693 Positive_regulation denotes Sox6 overexpression vector
T19091 261-271 Entity denotes penicillin
T19090 288-300 Entity denotes streptomycin
T19089 667-671 Protein denotes Sox6
T19088 123-177 Protein denotes Ham's F12 with 2 mM L-glutamine supplemented with heat
T19087 430-441 Entity denotes GM979 cells
T19086 31-42 Entity denotes GM979 cells
T19085 317-335 Entity denotes L-glutamine (2 mM)
T19084 564-569 Entity denotes Cells
T19083 595-603 Entity denotes promoter
T19082 708-731 Entity denotes assays of dosage effect
T19081 341-346 Entity denotes cells
T19080 138-154 Entity denotes 2 mM L-glutamine
T19079 52-56 Entity denotes Cell
T19078 771-774 Protein denotes pRL
T19077 587-594 Protein denotes with ɛy
R13572 T19089 T19092 themeOf Sox6,Sox6 overexpression vector
R13573 T19089 T19093 themeOf Sox6,Sox6 overexpression vector

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19074 843-844 . denotes .
T19073 833-843 NN denotes efficiency
T19072 820-832 NN denotes transfection
T19071 816-819 IN denotes for
T19070 808-815 NN denotes control
T19069 806-807 DT denotes a
T19068 803-805 IN denotes as
T19067 798-802 VBN denotes used
T19066 794-797 VBD denotes was
T19065 792-793 -RRB- denotes )
T19064 785-792 NNP denotes Promega
T19063 784-785 -LRB- denotes (
T19062 779-783 JJ denotes 15ng
T19061 771-778 JJ denotes pRL-CMV
T19060 769-770 . denotes .
T19059 768-769 -RRB- denotes )
T19058 766-768 NN denotes ng
T19051 745-747 NN denotes ng
T19050 741-744 CD denotes 200
T19049 736-740 VBD denotes used
T19036 687-693 NN denotes vector
T19035 672-686 NN denotes overexpression
T19034 667-671 JJ denotes Sox6
T19033 664-666 CC denotes or
T19032 657-663 NN denotes vector
T19031 651-656 JJ denotes empty
T19030 644-650 DT denotes either
T19029 639-643 IN denotes with
T19028 633-638 IN denotes along
T19027 631-632 -RRB- denotes )
T19026 629-631 NN denotes ng
T19025 625-628 CD denotes 500
T19024 624-625 -LRB- denotes (
T19023 613-623 NNS denotes constructs
T19022 604-612 NN denotes reporter
T19021 595-603 NN denotes promoter
T19020 592-594 JJ denotes ɛy
T19019 587-591 IN denotes with
T19018 575-586 VBN denotes transfected
T19017 570-574 VBD denotes were
T19016 564-569 NNS denotes Cells
T19015 562-563 . denotes .
T19014 561-562 -RRB- denotes )
T19013 555-561 NNPS denotes States
T19012 548-554 NNP denotes United
T19011 546-547 , denotes ,
T19010 539-546 NNP denotes Indiana
T19009 537-538 , denotes ,
T19008 525-537 NNP denotes Indianapolis
T19007 523-524 , denotes ,
T19006 518-523 NNP denotes Roche
T19005 517-518 -LRB- denotes (
T19004 509-516 NNP denotes FuGENE6
T19003 506-508 IN denotes by
T19002 497-505 NNS denotes plasmids
T19001 492-496 IN denotes with
T19000 480-491 VBN denotes transfected
T18999 475-479 VBD denotes were
T18998 468-474 NN denotes growth
T18997 465-467 IN denotes of
T18996 459-464 NN denotes phase
T18995 455-458 VB denotes log
T18994 452-454 IN denotes in
T18993 450-451 -RRB- denotes )
T18992 447-450 CD denotes 105
T18991 445-446 CD denotes ×
T18990 443-444 CD denotes 4
T18989 442-443 -LRB- denotes (
T18988 436-441 NNS denotes cells
T18987 430-435 CD denotes GM979
T18986 428-429 . denotes .
T18985 427-428 -RRB- denotes )
T18984 422-427 NN denotes serum
T18983 418-421 DT denotes the
T18982 405-417 VBG denotes inactivating
T18981 400-404 NN denotes heat
T18980 392-399 IN denotes without
T18979 391-392 -LRB- denotes (
T18978 385-390 IN denotes above
T18977 382-384 IN denotes as
T18976 369-381 VBD denotes supplemented
T18975 364-368 NNP denotes DMEM
T18974 361-363 IN denotes in
T18973 352-360 VBN denotes cultured
T18972 347-351 VBD denotes were
T18971 341-346 NNS denotes cells
T18970 337-340 NNP denotes MEL
T18969 335-336 . denotes .
T18968 334-335 -RRB- denotes )
T18967 332-334 NNP denotes mM
T18966 330-331 CD denotes 2
T18965 329-330 -LRB- denotes (
T18964 317-328 NNP denotes L-glutamine
T18963 313-316 CC denotes and
T18962 311-312 , denotes ,
T18961 310-311 -RRB- denotes )
T18960 308-310 NN denotes ml
T18959 307-308 NN denotes /
T18958 305-307 NN denotes μg
T18957 301-304 CD denotes 100
T18956 288-300 NNP denotes streptomycin
T18955 286-287 , denotes ,
T18954 285-286 -RRB- denotes )
T18953 277-285 NN denotes units/ml
T18952 273-276 CD denotes 100
T18951 272-273 -LRB- denotes (
T18950 261-271 NN denotes penicillin
T18949 259-260 , denotes ,
T18948 258-259 -RRB- denotes )
T18947 252-258 NNPS denotes States
T18946 245-251 NNP denotes United
T18945 243-244 , denotes ,
T18944 233-243 NNP denotes California
T18943 231-232 , denotes ,
T18942 223-231 NNP denotes Carlsbad
T18941 221-222 , denotes ,
T18940 212-221 NNP denotes Ivitrogen
T18939 211-212 -LRB- denotes (
T18938 205-210 NN denotes serum
T18937 200-204 NN denotes calf
T18936 194-199 JJ denotes fetal
T18935 192-193 NN denotes %
T18934 190-192 CD denotes 10
T18933 173-189 JJ denotes heat-inactivated
T18932 168-172 IN denotes with
T18931 155-167 VBD denotes supplemented
T18930 143-154 NNP denotes L-glutamine
T18929 140-142 NNP denotes mM
T18928 138-139 CD denotes 2
T18927 133-137 IN denotes with
T18926 129-132 CD denotes F12
T18925 126-128 POS denotes 's
T18924 123-126 NNP denotes Ham
T18923 120-122 IN denotes in
T18922 111-119 VBN denotes cultured
T18921 106-110 VBD denotes were
T18920 104-105 -RRB- denotes )
T18919 98-104 NNPS denotes States
T18918 91-97 NNP denotes United
T18917 89-90 , denotes ,
T18916 83-89 NNP denotes Jersey
T18915 79-82 NNP denotes New
T18914 77-78 , denotes ,
T18913 71-77 NNP denotes Camden
T18912 69-70 , denotes ,
T18911 57-69 NNPS denotes Repositories
T18910 52-56 NNP denotes Cell
T18909 44-51 NNP denotes Coriell
T18908 43-44 -LRB- denotes (
T18907 37-42 NNS denotes cells
T18906 31-36 CD denotes GM979
T18905 29-30 . denotes .
T18904 17-29 NN denotes transfection
T18903 13-16 CC denotes and
T18902 5-12 NN denotes culture
T18901 0-4 NNP denotes Cell
T19057 761-765 CD denotes 1000
T19056 757-760 CC denotes and
T19055 755-756 , denotes ,
T19054 753-755 NN denotes ng
T19053 749-752 CD denotes 500
T19052 747-748 , denotes ,
T19048 733-735 PRP denotes we
T19047 731-732 , denotes ,
T19046 725-731 NN denotes effect
T19045 718-724 NN denotes dosage
T19044 715-717 IN denotes of
T19043 708-714 NNS denotes assays
T19042 705-707 IN denotes In
T19041 703-704 . denotes .
T19040 702-703 -RRB- denotes )
T19039 700-702 NN denotes ng
T19038 695-699 CD denotes 1000
T19037 694-695 -LRB- denotes (
R13398 T18901 T18902 compound Cell,culture
R13399 T18902 T18902 ROOT culture,culture
R13400 T18903 T18902 cc and,culture
R13401 T18904 T18902 conj transfection,culture
R13402 T18905 T18902 punct .,culture
R13403 T18906 T18907 nummod GM979,cells
R13404 T18907 T18922 nsubjpass cells,cultured
R13405 T18908 T18907 punct (,cells
R13406 T18909 T18911 compound Coriell,Repositories
R13407 T18910 T18911 compound Cell,Repositories
R13408 T18911 T18907 appos Repositories,cells
R13409 T18912 T18911 punct ",",Repositories
R13410 T18913 T18911 conj Camden,Repositories
R13411 T18914 T18913 punct ",",Camden
R13412 T18915 T18916 compound New,Jersey
R13413 T18916 T18913 conj Jersey,Camden
R13414 T18917 T18916 punct ",",Jersey
R13415 T18918 T18919 compound United,States
R13416 T18919 T18916 appos States,Jersey
R13417 T18920 T18916 punct ),Jersey
R13418 T18921 T18922 auxpass were,cultured
R13419 T18922 T18922 ROOT cultured,cultured
R13420 T18923 T18922 prep in,cultured
R13421 T18924 T18926 poss Ham,F12
R13422 T18925 T18924 case 's,Ham
R13423 T18926 T18923 pobj F12,in
R13424 T18927 T18931 mark with,supplemented
R13425 T18928 T18930 nummod 2,L-glutamine
R13426 T18929 T18930 compound mM,L-glutamine
R13427 T18930 T18931 nsubj L-glutamine,supplemented
R13428 T18931 T18922 advcl supplemented,cultured
R13429 T18932 T18931 prep with,supplemented
R13430 T18933 T18938 amod heat-inactivated,serum
R13431 T18934 T18935 nummod 10,%
R13432 T18935 T18938 compound %,serum
R13433 T18936 T18937 amod fetal,calf
R13434 T18937 T18938 compound calf,serum
R13435 T18938 T18932 pobj serum,with
R13436 T18939 T18938 punct (,serum
R13437 T18940 T18968 nmod Ivitrogen,)
R13438 T18941 T18940 punct ",",Ivitrogen
R13439 T18942 T18940 conj Carlsbad,Ivitrogen
R13440 T18943 T18942 punct ",",Carlsbad
R13441 T18944 T18942 conj California,Carlsbad
R13442 T18945 T18944 punct ",",California
R13443 T18946 T18947 compound United,States
R13444 T18947 T18944 conj States,California
R13445 T18948 T18944 punct ),California
R13446 T18949 T18940 punct ",",Ivitrogen
R13447 T18950 T18967 nmod penicillin,mM
R13448 T18951 T18953 punct (,units/ml
R13449 T18952 T18953 nummod 100,units/ml
R13450 T18953 T18950 appos units/ml,penicillin
R13451 T18954 T18953 punct ),units/ml
R13452 T18955 T18950 punct ",",penicillin
R13453 T18956 T18960 nmod streptomycin,ml
R13454 T18957 T18956 nummod 100,streptomycin
R13455 T18958 T18960 compound μg,ml
R13456 T18959 T18960 compound /,ml
R13457 T18960 T18950 appos ml,penicillin
R13458 T18961 T18960 punct ),ml
R13459 T18962 T18950 punct ",",penicillin
R13460 T18963 T18950 cc and,penicillin
R13461 T18964 T18950 conj L-glutamine,penicillin
R13462 T18965 T18966 punct (,2
R13463 T18966 T18967 nummod 2,mM
R13464 T18967 T18940 appos mM,Ivitrogen
R13465 T18968 T18938 punct ),serum
R13466 T18969 T18922 punct .,cultured
R13467 T18970 T18971 compound MEL,cells
R13468 T18971 T18976 nsubjpass cells,supplemented
R13469 T18972 T18976 auxpass were,supplemented
R13470 T18973 T18972 acomp cultured,were
R13471 T18974 T18973 prep in,cultured
R13472 T18975 T18974 pobj DMEM,in
R13473 T18976 T18976 ROOT supplemented,supplemented
R13474 T18977 T18976 prep as,supplemented
R13475 T18978 T18977 prep above,as
R13476 T18979 T18978 punct (,above
R13477 T18980 T18978 prep without,above
R13478 T18981 T18980 pobj heat,without
R13479 T18982 T18978 pcomp inactivating,above
R13480 T18983 T18984 det the,serum
R13481 T18984 T18982 dobj serum,inactivating
R13482 T18985 T18977 punct ),as
R13483 T18986 T18976 punct .,supplemented
R13484 T18987 T18988 nummod GM979,cells
R13485 T18988 T19000 nsubjpass cells,transfected
R13486 T18989 T18988 punct (,cells
R13487 T18990 T18992 nummod 4,105
R13488 T18991 T18992 nummod ×,105
R13489 T18992 T18988 appos 105,cells
R13490 T18993 T18988 punct ),cells
R13491 T18994 T18988 prep in,cells
R13492 T18995 T18996 compound log,phase
R13493 T18996 T18994 pobj phase,in
R13494 T18997 T18996 prep of,phase
R13495 T18998 T18997 pobj growth,of
R13496 T18999 T19000 auxpass were,transfected
R13497 T19000 T19000 ROOT transfected,transfected
R13498 T19001 T19000 prep with,transfected
R13499 T19002 T19001 pobj plasmids,with
R13500 T19003 T19000 agent by,transfected
R13501 T19004 T19003 pobj FuGENE6,by
R13502 T19005 T19006 punct (,Roche
R13503 T19006 T19004 appos Roche,FuGENE6
R13504 T19007 T19006 punct ",",Roche
R13505 T19008 T19013 nmod Indianapolis,States
R13506 T19009 T19008 punct ",",Indianapolis
R13507 T19010 T19008 conj Indiana,Indianapolis
R13508 T19011 T19010 punct ",",Indiana
R13509 T19012 T19013 compound United,States
R13510 T19013 T19006 conj States,Roche
R13511 T19014 T19006 punct ),Roche
R13512 T19015 T19000 punct .,transfected
R13513 T19016 T19018 nsubjpass Cells,transfected
R13514 T19017 T19018 auxpass were,transfected
R13515 T19018 T19018 ROOT transfected,transfected
R13516 T19019 T19018 prep with,transfected
R13517 T19020 T19022 amod ɛy,reporter
R13518 T19021 T19022 compound promoter,reporter
R13519 T19022 T19023 compound reporter,constructs
R13520 T19023 T19019 pobj constructs,with
R13521 T19024 T19023 punct (,constructs
R13522 T19025 T19026 nummod 500,ng
R13523 T19026 T19023 appos ng,constructs
R13524 T19027 T19023 punct ),constructs
R13525 T19028 T19018 prep along,transfected
R13526 T19029 T19028 prep with,along
R13527 T19030 T19032 preconj either,vector
R13528 T19031 T19032 amod empty,vector
R13529 T19032 T19029 pobj vector,with
R13530 T19033 T19032 cc or,vector
R13531 T19034 T19036 amod Sox6,vector
R13532 T19035 T19036 compound overexpression,vector
R13533 T19036 T19032 conj vector,vector
R13534 T19037 T19036 punct (,vector
R13535 T19038 T19039 nummod 1000,ng
R13536 T19039 T19036 appos ng,vector
R13537 T19040 T19036 punct ),vector
R13538 T19041 T19018 punct .,transfected
R13539 T19042 T19049 prep In,used
R13540 T19043 T19042 pobj assays,In
R13541 T19044 T19043 prep of,assays
R13542 T19045 T19046 compound dosage,effect
R13543 T19046 T19044 pobj effect,of
R13544 T19047 T19049 punct ",",used
R13545 T19048 T19049 nsubj we,used
R13546 T19049 T19049 ROOT used,used
R13547 T19050 T19051 nummod 200,ng
R13548 T19051 T19049 dobj ng,used
R13549 T19052 T19051 punct ",",ng
R13550 T19053 T19054 nummod 500,ng
R13551 T19054 T19051 appos ng,ng
R13552 T19055 T19054 punct ",",ng
R13553 T19056 T19054 cc and,ng
R13554 T19057 T19058 nummod 1000,ng
R13555 T19058 T19054 conj ng,ng
R13556 T19059 T19051 punct ),ng
R13557 T19060 T19049 punct .,used
R13558 T19061 T19062 amod pRL-CMV,15ng
R13559 T19062 T19067 nsubjpass 15ng,used
R13560 T19063 T19064 punct (,Promega
R13561 T19064 T19062 appos Promega,15ng
R13562 T19065 T19064 punct ),Promega
R13563 T19066 T19067 auxpass was,used
R13564 T19067 T19067 ROOT used,used
R13565 T19068 T19067 prep as,used
R13566 T19069 T19070 det a,control
R13567 T19070 T19068 pobj control,as
R13568 T19071 T19070 prep for,control
R13569 T19072 T19073 compound transfection,efficiency
R13570 T19073 T19071 pobj efficiency,for
R13571 T19074 T19067 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18895 667-671 Protein denotes Sox6
T18894 509-516 Protein denotes FuGENE6

testone

Id Subject Object Predicate Lexical cue
T18697 667-671 Protein denotes Sox6
T18696 592-594 Protein denotes ɛy

test3

Id Subject Object Predicate Lexical cue
T18701 667-671 Protein denotes Sox6
T18700 592-594 Protein denotes ɛy
T18699 667-671 Protein denotes Sox6
T18698 592-594 Protein denotes ɛy