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PMC:1359074 / 38866-39398 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18565 530-531 NN denotes d
T18564 528-529 CD denotes 6
T18563 524-527 IN denotes for
T18562 521-523 NN denotes °C
T18561 517-520 CD denotes −80
T18560 514-516 IN denotes at
T18559 512-513 -RRB- denotes )
T18558 506-512 NNP denotes States
T18557 499-505 NNP denotes United
T18556 497-498 -COMMA- denotes ,
T18555 493-497 NNP denotes York
T18554 489-492 NNP denotes New
T18553 487-488 -COMMA- denotes ,
T18552 478-487 NNP denotes Rochester
T18551 476-477 -COMMA- denotes ,
T18550 471-476 NNP denotes Kodak
T18549 470-471 -LRB- denotes (
T18548 465-469 NN denotes film
T18547 459-464 NN denotes X-ray
T18546 456-458 TO denotes to
T18545 447-455 NN denotes exposure
T18544 444-446 TO denotes to
T18543 438-443 JJ denotes prior
T18542 435-437 NN denotes °C
T18541 432-434 CD denotes 60
T18540 429-431 IN denotes at
T18539 425-428 NN denotes SDS
T18538 423-424 NN denotes %
T18537 422-423 CD denotes 1
T18536 420-421 -COMMA- denotes ,
T18535 417-420 NNP denotes SSC
T18534 412-416 CD denotes 0.2×
T18533 407-411 IN denotes with
T18532 400-406 VB denotes washed
T18531 395-399 VB denotes were
T18530 389-394 NN denotes Blots
T18529 379-387 NN denotes solution
T18528 365-378 NN denotes hybridization
T18527 361-364 NN denotes SDS
T18526 359-360 NN denotes %
T18525 358-359 CD denotes 7
T18524 349-357 VB denotes buffered
T18523 339-348 NN denotes phosphate
T18522 336-338 IN denotes in
T18521 326-335 VB denotes performed
T18520 322-325 VB denotes was
T18519 308-321 NN denotes hybridization
T18518 304-307 DT denotes The
T18517 301-302 -RRB- denotes )
T18516 294-301 NNP denotes Kingdom
T18515 287-293 NNP denotes United
T18514 285-286 -COMMA- denotes ,
T18513 278-285 NNP denotes England
T18512 276-277 -COMMA- denotes ,
T18511 261-276 NNP denotes Buckinghamshire
T18510 259-260 -COMMA- denotes ,
T18509 248-259 NNP denotes Biosciences
T18508 239-247 NNP denotes Amersham
T18507 237-238 -COLON- denotes ;
T18506 226-237 NN denotes RediprimeII
T18505 225-226 -LRB- denotes (
T18504 216-224 NN denotes labeling
T18503 209-215 NN denotes primer
T18502 202-208 JJ denotes random
T18501 199-201 IN denotes by
T18500 197-198 -COMMA- denotes ,
T18499 193-197 NN denotes dCTP
T18498 192-193 -RRB- denotes ]
T18497 187-192 NN denotes α-32P
T18496 186-187 -LRB- denotes [
T18495 181-185 IN denotes with
T18494 173-180 VB denotes labeled
T18493 169-172 CC denotes and
T18492 167-168 -RRB- denotes )
T18491 158-167 CD denotes 1353–1927
T18490 146-157 NN denotes nucleotides
T18489 145-146 -LRB- denotes (
T18488 138-144 NN denotes RT-PCR
T18487 135-137 IN denotes by
T18486 125-134 VB denotes generated
T18485 119-124 NN denotes probe
T18484 114-118 NN denotes Sox6
T18483 112-113 DT denotes a
T18482 107-111 IN denotes with
T18481 96-106 VB denotes hybridized
T18480 92-95 VB denotes was
T18479 90-91 -RRB- denotes )
T18478 84-90 NNP denotes States
T18477 77-83 NNP denotes United
T18476 75-76 -COMMA- denotes ,
T18475 67-75 NNP denotes Maryland
T18474 65-66 -COMMA- denotes ,
T18473 56-65 NNP denotes Rockville
T18472 54-55 -COMMA- denotes ,
T18471 47-54 NN denotes Seegene
T18470 46-47 -LRB- denotes (
T18469 39-45 NN denotes filter
T18468 34-38 NN denotes blot
T18467 25-33 NN denotes Northern
T18466 18-24 NN denotes tissue
T18465 8-17 JJ denotes embryonic
T18464 2-7 NN denotes mouse
T18463 0-1 DT denotes A
R13007 T18469 T18463 arg1Of filter,A
R13008 T18469 T18464 arg1Of filter,mouse
R13009 T18469 T18465 arg1Of filter,embryonic
R13010 T18469 T18466 arg1Of filter,tissue
R13011 T18469 T18467 arg1Of filter,Northern
R13012 T18469 T18468 arg1Of filter,blot
R13013 T18469 T18470 arg1Of filter,(
R13014 T18469 T18480 arg1Of filter,was
R13015 T18469 T18481 arg2Of filter,hybridized
R13016 T18471 T18470 arg2Of Seegene,(
R13017 T18471 T18472 arg1Of Seegene,","
R13018 T18471 T18476 arg1Of Seegene,","
R13019 T18473 T18474 arg1Of Rockville,","
R13020 T18474 T18472 arg2Of ",",","
R13021 T18475 T18474 arg2Of Maryland,","
R13022 T18478 T18476 arg2Of States,","
R13023 T18478 T18477 arg1Of States,United
R13024 T18479 T18470 arg3Of ),(
R13025 T18481 T18480 arg2Of hybridized,was
R13026 T18481 T18482 arg1Of hybridized,with
R13027 T18481 T18500 arg1Of hybridized,","
R13028 T18481 T18501 arg1Of hybridized,by
R13029 T18485 T18482 arg2Of probe,with
R13030 T18485 T18483 arg1Of probe,a
R13031 T18485 T18484 arg1Of probe,Sox6
R13032 T18485 T18486 arg2Of probe,generated
R13033 T18485 T18494 arg2Of probe,labeled
R13034 T18486 T18487 arg1Of generated,by
R13035 T18486 T18493 arg1Of generated,and
R13036 T18488 T18487 arg2Of RT-PCR,by
R13037 T18488 T18489 arg1Of RT-PCR,(
R13038 T18490 T18489 arg2Of nucleotides,(
R13039 T18490 T18491 arg1Of nucleotides,1353–1927
R13040 T18492 T18489 arg3Of ),(
R13041 T18494 T18493 arg2Of labeled,and
R13042 T18494 T18495 arg1Of labeled,with
R13043 T18497 T18496 arg2Of α-32P,[
R13044 T18498 T18496 arg3Of ],[
R13045 T18499 T18495 arg2Of dCTP,with
R13046 T18499 T18496 arg1Of dCTP,[
R13047 T18504 T18501 arg2Of labeling,by
R13048 T18504 T18502 arg1Of labeling,random
R13049 T18504 T18503 arg1Of labeling,primer
R13050 T18504 T18505 arg1Of labeling,(
R13051 T18506 T18507 arg1Of RediprimeII,;
R13052 T18507 T18505 arg2Of ;,(
R13053 T18507 T18514 arg1Of ;,","
R13054 T18509 T18508 arg1Of Biosciences,Amersham
R13055 T18509 T18510 arg1Of Biosciences,","
R13056 T18510 T18512 arg1Of ",",","
R13057 T18511 T18510 arg2Of Buckinghamshire,","
R13058 T18512 T18507 arg2Of ",",;
R13059 T18513 T18512 arg2Of England,","
R13060 T18516 T18514 arg2Of Kingdom,","
R13061 T18516 T18515 arg1Of Kingdom,United
R13062 T18517 T18505 arg3Of ),(
R13063 T18519 T18518 arg1Of hybridization,The
R13064 T18519 T18520 arg1Of hybridization,was
R13065 T18519 T18521 arg2Of hybridization,performed
R13066 T18521 T18520 arg2Of performed,was
R13067 T18521 T18522 arg1Of performed,in
R13068 T18523 T18522 arg2Of phosphate,in
R13069 T18523 T18524 arg2Of phosphate,buffered
R13070 T18525 T18526 arg1Of 7,%
R13071 T18529 T18524 arg3Of solution,buffered
R13072 T18529 T18525 arg1Of solution,7
R13073 T18529 T18527 arg1Of solution,SDS
R13074 T18529 T18528 arg1Of solution,hybridization
R13075 T18530 T18531 arg1Of Blots,were
R13076 T18530 T18532 arg2Of Blots,washed
R13077 T18532 T18531 arg2Of washed,were
R13078 T18532 T18533 arg1Of washed,with
R13079 T18535 T18536 arg1Of SSC,","
R13080 T18536 T18534 arg1Of ",",0.2×
R13081 T18538 T18536 arg2Of %,","
R13082 T18538 T18537 arg1Of %,1
R13083 T18539 T18533 arg2Of SDS,with
R13084 T18539 T18535 arg1Of SDS,SSC
R13085 T18539 T18538 arg1Of SDS,%
R13086 T18539 T18540 arg1Of SDS,at
R13087 T18539 T18543 arg1Of SDS,prior
R13088 T18539 T18549 arg1Of SDS,(
R13089 T18539 T18560 arg1Of SDS,at
R13090 T18542 T18540 arg2Of °C,at
R13091 T18542 T18541 arg1Of °C,60
R13092 T18543 T18544 arg1Of prior,to
R13093 T18545 T18544 arg2Of exposure,to
R13094 T18545 T18546 arg1Of exposure,to
R13095 T18548 T18546 arg2Of film,to
R13096 T18548 T18547 arg1Of film,X-ray
R13097 T18550 T18551 arg1Of Kodak,","
R13098 T18551 T18553 arg1Of ",",","
R13099 T18552 T18551 arg2Of Rochester,","
R13100 T18553 T18556 arg1Of ",",","
R13101 T18555 T18553 arg2Of York,","
R13102 T18555 T18554 arg1Of York,New
R13103 T18556 T18549 arg2Of ",",(
R13104 T18558 T18556 arg2Of States,","
R13105 T18558 T18557 arg1Of States,United
R13106 T18559 T18549 arg3Of ),(
R13107 T18562 T18560 arg2Of °C,at
R13108 T18562 T18561 arg1Of °C,−80
R13109 T18562 T18563 arg1Of °C,for
R13110 T18565 T18563 arg2Of d,for
R13111 T18565 T18564 arg1Of d,6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18458 114-118 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18566 114-118 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T18451 18-24 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T18450 8-24 http://purl.obolibrary.org/obo/UBERON_0005291 denotes embryonic tissue

GO-BP

Id Subject Object Predicate Lexical cue
T18456 138-140 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

GO-MF

Id Subject Object Predicate Lexical cue
T18459 138-140 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

sentences

Id Subject Object Predicate Lexical cue
T18455 389-532 Sentence denotes Blots were washed with 0.2× SSC, 1% SDS at 60 °C prior to exposure to X-ray film (Kodak, Rochester, New York, United States) at −80 °C for 6 d.
T18454 304-388 Sentence denotes The hybridization was performed in phosphate buffered 7% SDS hybridization solution.
T18453 0-303 Sentence denotes A mouse embryonic tissue Northern blot filter (Seegene, Rockville, Maryland, United States) was hybridized with a Sox6 probe generated by RT-PCR (nucleotides 1353–1927) and labeled with [α-32P]dCTP, by random primer labeling (RediprimeII; Amersham Biosciences, Buckinghamshire, England, United Kingdom).
T298 0-303 Sentence denotes A mouse embryonic tissue Northern blot filter (Seegene, Rockville, Maryland, United States) was hybridized with a Sox6 probe generated by RT-PCR (nucleotides 1353–1927) and labeled with [α-32P]dCTP, by random primer labeling (RediprimeII; Amersham Biosciences, Buckinghamshire, England, United Kingdom).
T299 304-388 Sentence denotes The hybridization was performed in phosphate buffered 7% SDS hybridization solution.
T300 389-532 Sentence denotes Blots were washed with 0.2× SSC, 1% SDS at 60 °C prior to exposure to X-ray film (Kodak, Rochester, New York, United States) at −80 °C for 6 d.

simple1

Id Subject Object Predicate Lexical cue
T18460 114-118 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18692 114-118 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18567 114-118 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T18570 114-118 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18691 135-168 Protein denotes by RT-PCR (nucleotides 1353–1927)
T18690 361-364 Protein denotes SDS
T18689 339-348 Entity denotes phosphate
T18688 112-168 Protein denotes a Sox6 probe generated by RT-PCR (nucleotides 1353–1927)
T18687 193-215 Entity denotes dCTP, by random primer
T18686 422-434 Protein denotes 1% SDS at 60

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18684 530-532 NN denotes d.
T18683 528-529 CD denotes 6
T18682 524-527 IN denotes for
T18681 522-523 NNP denotes C
T18680 521-522 CD denotes °
T18679 518-520 CD denotes 80
T18678 517-518 CD denotes −
T18677 514-516 IN denotes at
T18676 512-513 -RRB- denotes )
T18675 506-512 NNPS denotes States
T18674 499-505 NNP denotes United
T18673 497-498 , denotes ,
T18672 493-497 NNP denotes York
T18671 489-492 NNP denotes New
T18670 487-488 , denotes ,
T18669 478-487 NNP denotes Rochester
T18668 476-477 , denotes ,
T18667 471-476 NNP denotes Kodak
T18666 470-471 -LRB- denotes (
T18665 465-469 NN denotes film
T18664 459-464 NN denotes X-ray
T18663 456-458 TO denotes to
T18662 447-455 NN denotes exposure
T18661 444-446 TO denotes to
T18660 438-443 RB denotes prior
T18659 436-437 NNP denotes C
T18658 435-436 CD denotes °
T18657 432-434 CD denotes 60
T18656 429-431 IN denotes at
T18655 425-428 NNP denotes SDS
T18654 423-424 NN denotes %
T18653 422-423 CD denotes 1
T18652 420-421 , denotes ,
T18651 417-420 NNP denotes SSC
T18650 415-416 CD denotes ×
T18649 412-415 CD denotes 0.2
T18648 407-411 IN denotes with
T18647 400-406 VBN denotes washed
T18646 395-399 VBD denotes were
T18645 389-394 NNS denotes Blots
T18644 387-388 . denotes .
T18643 379-387 NN denotes solution
T18642 365-378 NN denotes hybridization
T18641 361-364 NNP denotes SDS
T18640 359-360 NN denotes %
T18639 358-359 CD denotes 7
T18638 349-357 VBD denotes buffered
T18637 339-348 NN denotes phosphate
T18636 336-338 IN denotes in
T18635 326-335 VBN denotes performed
T18634 322-325 VBD denotes was
T18633 308-321 NN denotes hybridization
T18632 304-307 DT denotes The
T18631 302-303 . denotes .
T18630 301-302 -RRB- denotes )
T18629 294-301 NNP denotes Kingdom
T18628 287-293 NNP denotes United
T18627 285-286 , denotes ,
T18615 202-208 JJ denotes random
T18614 199-201 IN denotes by
T18613 197-198 , denotes ,
T18612 193-197 NNP denotes dCTP
T18611 192-193 NNP denotes ]
T18610 187-192 NNP denotes α-32P
T18609 186-187 NNP denotes [
T18608 181-185 IN denotes with
T18607 173-180 VBN denotes labeled
T18606 169-172 CC denotes and
T18605 167-168 -RRB- denotes )
T18604 163-167 CD denotes 1927
T18603 158-162 CD denotes 1353
T18602 146-157 NNS denotes nucleotides
T18601 145-146 -LRB- denotes (
T18600 138-144 NNP denotes RT-PCR
T18599 135-137 IN denotes by
T18598 125-134 VBN denotes generated
T18597 119-124 NN denotes probe
T18596 114-118 JJ denotes Sox6
T18595 112-113 DT denotes a
T18594 107-111 IN denotes with
T18593 96-106 VBN denotes hybridized
T18592 92-95 VBD denotes was
T18591 90-91 -RRB- denotes )
T18590 84-90 NNPS denotes States
T18589 77-83 NNP denotes United
T18588 75-76 , denotes ,
T18587 67-75 NNP denotes Maryland
T18586 65-66 , denotes ,
T18585 56-65 NNP denotes Rockville
T18584 54-55 , denotes ,
T18583 47-54 NNP denotes Seegene
T18582 46-47 -LRB- denotes (
T18581 39-45 NN denotes filter
T18580 34-38 NN denotes blot
T18579 25-33 NNP denotes Northern
T18578 18-24 NN denotes tissue
T18577 8-17 JJ denotes embryonic
T18576 2-7 NN denotes mouse
T18575 0-1 DT denotes A
T18626 278-285 NNP denotes England
T18625 276-277 , denotes ,
T18624 261-276 NNP denotes Buckinghamshire
T18623 259-260 , denotes ,
T18622 248-259 NNP denotes Biosciences
T18621 239-247 NNP denotes Amersham
T18620 237-238 : denotes ;
T18619 226-237 NNP denotes RediprimeII
T18618 225-226 -LRB- denotes (
T18617 216-224 VBG denotes labeling
T18616 209-215 NN denotes primer
R13115 T18575 T18581 det A,filter
R13116 T18576 T18581 compound mouse,filter
R13117 T18577 T18578 amod embryonic,tissue
R13118 T18578 T18581 compound tissue,filter
R13119 T18579 T18580 compound Northern,blot
R13120 T18580 T18581 compound blot,filter
R13121 T18581 T18593 nsubjpass filter,hybridized
R13122 T18582 T18581 punct (,filter
R13123 T18583 T18581 appos Seegene,filter
R13124 T18584 T18583 punct ",",Seegene
R13125 T18585 T18583 conj Rockville,Seegene
R13126 T18586 T18585 punct ",",Rockville
R13127 T18587 T18585 conj Maryland,Rockville
R13128 T18588 T18587 punct ",",Maryland
R13129 T18589 T18590 compound United,States
R13130 T18590 T18587 appos States,Maryland
R13131 T18591 T18587 punct ),Maryland
R13132 T18592 T18593 auxpass was,hybridized
R13133 T18593 T18593 ROOT hybridized,hybridized
R13134 T18594 T18593 prep with,hybridized
R13135 T18595 T18597 det a,probe
R13136 T18596 T18597 amod Sox6,probe
R13137 T18597 T18594 pobj probe,with
R13138 T18598 T18597 acl generated,probe
R13139 T18599 T18598 agent by,generated
R13140 T18600 T18599 pobj RT-PCR,by
R13141 T18601 T18602 punct (,nucleotides
R13142 T18602 T18597 appos nucleotides,probe
R13143 T18603 T18602 nummod 1353,nucleotides
R13144 T18604 T18602 npadvmod 1927,nucleotides
R13145 T18605 T18602 punct ),nucleotides
R13146 T18606 T18593 cc and,hybridized
R13147 T18607 T18593 conj labeled,hybridized
R13148 T18608 T18607 prep with,labeled
R13149 T18609 T18612 compound [,dCTP
R13150 T18610 T18612 compound α-32P,dCTP
R13151 T18611 T18612 compound ],dCTP
R13152 T18612 T18608 pobj dCTP,with
R13153 T18613 T18612 punct ",",dCTP
R13154 T18614 T18607 agent by,labeled
R13155 T18615 T18616 amod random,primer
R13156 T18616 T18614 pobj primer,by
R13157 T18617 T18616 acl labeling,primer
R13158 T18618 T18619 punct (,RediprimeII
R13159 T18619 T18617 ccomp RediprimeII,labeling
R13160 T18620 T18619 punct ;,RediprimeII
R13161 T18621 T18622 compound Amersham,Biosciences
R13162 T18622 T18619 conj Biosciences,RediprimeII
R13163 T18623 T18622 punct ",",Biosciences
R13164 T18624 T18622 conj Buckinghamshire,Biosciences
R13165 T18625 T18624 punct ",",Buckinghamshire
R13166 T18626 T18624 conj England,Buckinghamshire
R13167 T18627 T18626 punct ",",England
R13168 T18628 T18629 compound United,Kingdom
R13169 T18629 T18619 npadvmod Kingdom,RediprimeII
R13170 T18630 T18619 punct ),RediprimeII
R13171 T18631 T18593 punct .,hybridized
R13172 T18632 T18633 det The,hybridization
R13173 T18633 T18635 nsubjpass hybridization,performed
R13174 T18634 T18635 auxpass was,performed
R13175 T18635 T18635 ROOT performed,performed
R13176 T18636 T18635 prep in,performed
R13177 T18637 T18636 pobj phosphate,in
R13178 T18638 T18635 advcl buffered,performed
R13179 T18639 T18640 nummod 7,%
R13180 T18640 T18643 compound %,solution
R13181 T18641 T18643 compound SDS,solution
R13182 T18642 T18643 compound hybridization,solution
R13183 T18643 T18638 dobj solution,buffered
R13184 T18644 T18635 punct .,performed
R13185 T18645 T18647 nsubjpass Blots,washed
R13186 T18646 T18647 auxpass were,washed
R13187 T18647 T18647 ROOT washed,washed
R13188 T18648 T18647 prep with,washed
R13189 T18649 T18651 nummod 0.2,SSC
R13190 T18650 T18651 nummod ×,SSC
R13191 T18651 T18648 pobj SSC,with
R13192 T18652 T18651 punct ",",SSC
R13193 T18653 T18654 nummod 1,%
R13194 T18654 T18655 compound %,SDS
R13195 T18655 T18651 appos SDS,SSC
R13196 T18656 T18647 prep at,washed
R13197 T18657 T18658 nummod 60,°
R13198 T18658 T18656 pobj °,at
R13199 T18659 T18660 compound C,prior
R13200 T18660 T18647 advmod prior,washed
R13201 T18661 T18660 prep to,prior
R13202 T18662 T18661 pobj exposure,to
R13203 T18663 T18662 prep to,exposure
R13204 T18664 T18665 compound X-ray,film
R13205 T18665 T18663 pobj film,to
R13206 T18666 T18667 punct (,Kodak
R13207 T18667 T18665 appos Kodak,film
R13208 T18668 T18667 punct ",",Kodak
R13209 T18669 T18667 conj Rochester,Kodak
R13210 T18670 T18669 punct ",",Rochester
R13211 T18671 T18672 compound New,York
R13212 T18672 T18669 conj York,Rochester
R13213 T18673 T18672 punct ",",York
R13214 T18674 T18675 compound United,States
R13215 T18675 T18672 appos States,York
R13216 T18676 T18672 punct ),York
R13217 T18677 T18660 prep at,prior
R13218 T18678 T18680 nummod −,°
R13219 T18679 T18680 nummod 80,°
R13220 T18680 T18677 pobj °,at
R13221 T18681 T18660 npadvmod C,prior
R13222 T18682 T18660 prep for,prior
R13223 T18683 T18684 nummod 6,d.
R13224 T18684 T18682 pobj d.,for

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18569 114-118 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T18447 114-118 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T18449 114-118 Protein denotes Sox6
T18448 114-118 Protein denotes Sox6