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PMC:1359074 / 38338-38529 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18244 185-190 NN denotes eosin
T18243 181-184 CC denotes and
T18242 169-180 NN denotes hematoxylin
T18241 164-168 IN denotes with
T18240 156-163 VB denotes stained
T18239 152-155 CC denotes and
T18238 150-151 -COMMA- denotes ,
T18237 148-150 NN denotes μm
T18236 146-147 CD denotes 5
T18235 143-145 IN denotes at
T18234 133-142 VB denotes sectioned
T18233 131-132 -COMMA- denotes ,
T18232 114-131 JJ denotes paraffin-embedded
T18231 112-113 -COMMA- denotes ,
T18230 104-112 NN denotes formalin
T18229 102-103 NN denotes %
T18228 100-102 CD denotes 10
T18227 97-99 IN denotes in
T18226 91-96 VB denotes fixed
T18225 86-90 VB denotes were
T18224 81-85 NN denotes mice
T18223 72-80 NN denotes day–10.5
T18222 62-71 JJ denotes postnatal
T18221 58-61 CC denotes and
T18220 56-57 -COMMA- denotes ,
T18219 49-56 NN denotes embryos
T18218 42-48 JJ denotes mutant
T18217 38-41 CC denotes and
T18216 35-37 NN denotes WT
T18215 26-34 JJ denotes 14.5-dpc
T18214 24-25 -COMMA- denotes ,
T18213 16-24 NN denotes analysis
T18212 10-15 NN denotes mount
T18211 4-9 JJ denotes whole
T18210 0-3 IN denotes For
R12781 T18213 T18210 arg2Of analysis,For
R12782 T18213 T18211 arg1Of analysis,whole
R12783 T18213 T18212 arg1Of analysis,mount
R12784 T18215 T18216 arg1Of 14.5-dpc,WT
R12785 T18215 T18217 arg1Of 14.5-dpc,and
R12786 T18218 T18217 arg2Of mutant,and
R12787 T18219 T18215 arg1Of embryos,14.5-dpc
R12788 T18219 T18218 arg1Of embryos,mutant
R12789 T18219 T18221 arg1Of embryos,and
R12790 T18221 T18220 arg1Of and,","
R12791 T18221 T18225 arg1Of and,were
R12792 T18221 T18226 arg2Of and,fixed
R12793 T18221 T18240 arg2Of and,stained
R12794 T18224 T18221 arg2Of mice,and
R12795 T18224 T18222 arg1Of mice,postnatal
R12796 T18224 T18223 arg1Of mice,day–10.5
R12797 T18226 T18227 arg1Of fixed,in
R12798 T18226 T18239 arg1Of fixed,and
R12799 T18228 T18229 arg1Of 10,%
R12800 T18230 T18227 arg2Of formalin,in
R12801 T18230 T18228 arg1Of formalin,10
R12802 T18230 T18231 arg1Of formalin,","
R12803 T18230 T18233 arg1Of formalin,","
R12804 T18230 T18234 arg2Of formalin,sectioned
R12805 T18232 T18231 arg2Of paraffin-embedded,","
R12806 T18234 T18235 arg1Of sectioned,at
R12807 T18237 T18235 arg2Of μm,at
R12808 T18237 T18236 arg1Of μm,5
R12809 T18239 T18210 arg1Of and,For
R12810 T18239 T18214 arg1Of and,","
R12811 T18239 T18225 arg2Of and,were
R12812 T18239 T18238 arg1Of and,","
R12813 T18240 T18239 arg2Of stained,and
R12814 T18240 T18241 arg1Of stained,with
R12815 T18242 T18243 arg1Of hematoxylin,and
R12816 T18243 T18241 arg2Of and,with
R12817 T18244 T18243 arg2Of eosin,and

UBERON-AE

Id Subject Object Predicate Lexical cue
T18174 49-56 http://purl.obolibrary.org/obo/UBERON_0000922 denotes embryos

sentences

Id Subject Object Predicate Lexical cue
T18179 0-191 Sentence denotes For whole mount analysis, 14.5-dpc WT and mutant embryos, and postnatal day–10.5 mice were fixed in 10% formalin, paraffin-embedded, sectioned at 5 μm, and stained with hematoxylin and eosin.
T291 0-191 Sentence denotes For whole mount analysis, 14.5-dpc WT and mutant embryos, and postnatal day–10.5 mice were fixed in 10% formalin, paraffin-embedded, sectioned at 5 μm, and stained with hematoxylin and eosin.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18444 169-180 Entity denotes hematoxylin
T18442 62-85 Protein denotes postnatal day–10.5 mice
T18441 100-132 Entity denotes 10% formalin, paraffin-embedded,
T18440 114-131 Entity denotes paraffin-embedded

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18368 190-191 . denotes .
T18367 185-190 NN denotes eosin
T18366 181-184 CC denotes and
T18365 169-180 NN denotes hematoxylin
T18364 164-168 IN denotes with
T18363 156-163 VBN denotes stained
T18362 152-155 CC denotes and
T18361 150-151 , denotes ,
T18360 148-150 NN denotes μm
T18359 146-147 CD denotes 5
T18358 143-145 IN denotes at
T18357 133-142 VBN denotes sectioned
T18356 131-132 , denotes ,
T18355 114-131 JJ denotes paraffin-embedded
T18354 112-113 , denotes ,
T18353 104-112 NN denotes formalin
T18352 102-103 NN denotes %
T18351 100-102 CD denotes 10
T18350 97-99 IN denotes in
T18349 91-96 VBN denotes fixed
T18348 86-90 VBD denotes were
T18347 81-85 NNS denotes mice
T18346 76-80 CD denotes 10.5
T18345 72-75 NN denotes day
T18344 62-71 JJ denotes postnatal
T18343 58-61 CC denotes and
T18342 56-57 , denotes ,
T18341 49-56 NNS denotes embryos
T18340 42-48 JJ denotes mutant
T18339 38-41 CC denotes and
T18338 35-37 NNP denotes WT
T18337 26-34 JJ denotes 14.5-dpc
T18336 24-25 , denotes ,
T18335 16-24 NN denotes analysis
T18334 10-15 VBP denotes mount
T18333 4-9 JJ denotes whole
T18332 0-3 IN denotes For
R12901 T18332 T18349 prep For,fixed
R12902 T18333 T18335 amod whole,analysis
R12903 T18334 T18335 compound mount,analysis
R12904 T18335 T18332 pobj analysis,For
R12905 T18336 T18349 punct ",",fixed
R12906 T18337 T18338 compound 14.5-dpc,WT
R12907 T18338 T18349 nsubjpass WT,fixed
R12908 T18339 T18338 cc and,WT
R12909 T18340 T18341 amod mutant,embryos
R12910 T18341 T18338 conj embryos,WT
R12911 T18342 T18341 punct ",",embryos
R12912 T18343 T18341 cc and,embryos
R12913 T18344 T18345 amod postnatal,day
R12914 T18345 T18349 npadvmod day,fixed
R12915 T18346 T18347 nummod 10.5,mice
R12916 T18347 T18349 nsubjpass mice,fixed
R12917 T18348 T18349 auxpass were,fixed
R12918 T18349 T18349 ROOT fixed,fixed
R12919 T18350 T18349 prep in,fixed
R12920 T18351 T18352 nummod 10,%
R12921 T18352 T18353 compound %,formalin
R12922 T18353 T18350 pobj formalin,in
R12923 T18354 T18353 punct ",",formalin
R12924 T18355 T18357 amod paraffin-embedded,sectioned
R12925 T18356 T18355 punct ",",paraffin-embedded
R12926 T18357 T18349 conj sectioned,fixed
R12927 T18358 T18357 prep at,sectioned
R12928 T18359 T18360 nummod 5,μm
R12929 T18360 T18358 pobj μm,at
R12930 T18361 T18357 punct ",",sectioned
R12931 T18362 T18357 cc and,sectioned
R12932 T18363 T18357 conj stained,sectioned
R12933 T18364 T18363 prep with,stained
R12934 T18365 T18364 pobj hematoxylin,with
R12935 T18366 T18365 cc and,hematoxylin
R12936 T18367 T18365 conj eosin,hematoxylin
R12937 T18368 T18349 punct .,fixed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18303 185-190 Protein denotes eosin
T18302 169-180 Protein denotes hematoxylin