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PMC:1359074 / 37167-38169 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-8562047-85761027 423-425 8562047 denotes 52
T83427 423-425 8562047 denotes 52

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17944 992-1001 JJ denotes available
T17943 988-991 VB denotes are
T17942 981-987 NN denotes images
T17941 972-980 JJ denotes Original
T17940 963-970 NN denotes plugins
T17939 961-962 -RRB- denotes )
T17938 955-961 NNP denotes States
T17937 948-954 NNP denotes United
T17936 946-947 -COMMA- denotes ,
T17935 938-946 NNP denotes Carolina
T17934 932-937 NNP denotes North
T17933 930-931 -COMMA- denotes ,
T17932 921-930 NNP denotes Asheville
T17931 919-920 -COMMA- denotes ,
T17930 911-919 NNP denotes Graphics
T17929 902-910 NNP denotes Reindeer
T17928 901-902 -LRB- denotes (
T17927 897-900 NNP denotes Pro
T17926 891-896 NNP denotes Fovea
T17925 886-890 IN denotes with
T17924 877-885 NN denotes software
T17923 875-876 -RRB- denotes )
T17922 869-875 NNP denotes States
T17921 862-868 NNP denotes United
T17920 860-861 -COMMA- denotes ,
T17919 850-860 NNP denotes California
T17918 848-849 -COMMA- denotes ,
T17917 844-848 NNP denotes Jose
T17916 840-843 NNP denotes San
T17915 838-839 -COMMA- denotes ,
T17914 833-838 NNP denotes Adobe
T17913 832-833 -LRB- denotes (
T17912 822-831 NNP denotes Photoshop
T17911 816-821 VB denotes using
T17910 807-815 VB denotes combined
T17909 803-806 CC denotes and
T17908 801-802 -COMMA- denotes ,
T17907 788-801 VB denotes pseudocolored
T17906 786-787 -COMMA- denotes ,
T17905 777-786 VB denotes processed
T17904 772-776 VB denotes were
T17903 765-771 NN denotes Images
T17902 762-763 -RRB- denotes )
T17901 759-762 CD denotes 0.5
T17900 757-758 SYM denotes =
T17899 754-756 NN denotes NA
T17898 753-754 -LRB- denotes (
T17897 749-752 CD denotes 10×
T17896 745-748 CC denotes and
T17895 743-744 -RRB- denotes )
T17894 739-743 CD denotes 0.04
T17893 737-738 SYM denotes =
T17892 734-736 NN denotes NA
T17891 733-734 -LRB- denotes (
T17890 730-732 CD denotes 1×
T17889 725-729 VB denotes were
T17888 720-724 VB denotes used
T17887 709-719 NN denotes Objectives
T17886 706-707 -RRB- denotes )
T17885 700-706 NNP denotes States
T17884 693-699 NNP denotes United
T17883 691-692 -COMMA- denotes ,
T17882 683-691 NNP denotes Michigan
T17881 681-682 -COMMA- denotes ,
T17880 674-681 NNP denotes Heights
T17879 665-673 NNP denotes Sterling
T17878 663-664 -COMMA- denotes ,
T17877 652-663 NNP denotes Instruments
T17876 641-651 JJ denotes Diagnostic
T17875 640-641 -LRB- denotes (
T17874 633-639 NN denotes camera
T17873 625-632 JJ denotes digital
T17872 615-624 NN denotes RT-Slider
T17871 610-614 NN denotes SPOT
T17870 606-609 CC denotes and
T17869 604-605 -RRB- denotes )
T17868 598-604 NNP denotes States
T17867 591-597 NNP denotes United
T17866 589-590 -COMMA- denotes ,
T17865 585-589 NNP denotes York
T17864 581-584 NNP denotes New
T17863 579-580 -COMMA- denotes ,
T17862 571-579 NNP denotes Melville
T17861 569-570 -COMMA- denotes ,
T17860 564-569 NNP denotes Nikon
T17859 563-564 -LRB- denotes (
T17858 552-562 NN denotes microscope
T17857 543-551 NNP denotes Optiphot
T17856 537-542 NNP denotes Nikon
T17855 535-536 DT denotes a
T17854 530-534 IN denotes with
T17853 521-529 VB denotes obtained
T17852 516-520 VB denotes were
T17851 509-515 NN denotes images
T17850 497-508 NN denotes brightfield
T17849 493-496 CC denotes and
T17848 483-492 NN denotes Darkfield
T17847 478-481 NN denotes 33P
T17846 473-477 IN denotes with
T17845 465-472 VB denotes labeled
T17844 458-464 NN denotes probes
T17843 454-457 NN denotes RNA
T17842 442-453 VB denotes transcribed
T17841 436-441 FW denotes vitro
T17840 433-435 FW denotes in
T17839 427-432 VB denotes using
T17838 425-426 -RRB- denotes ]
T17837 423-425 CD denotes 52
T17836 422-423 -LRB- denotes [
T17835 412-421 VB denotes described
T17834 409-411 IN denotes as
T17833 395-408 NN denotes hybridization
T17832 390-394 FW denotes situ
T17831 387-389 FW denotes in
T17830 383-386 IN denotes for
T17829 373-382 VB denotes processed
T17828 368-372 VB denotes were
T17827 361-367 NN denotes Slides
T17826 358-359 -RRB- denotes )
T17825 352-358 NNP denotes States
T17824 345-351 NNP denotes United
T17823 343-344 -COMMA- denotes ,
T17822 331-343 NNP denotes Pennsylvania
T17821 329-330 -COMMA- denotes ,
T17820 322-329 NNP denotes Chester
T17819 317-321 NNP denotes West
T17818 315-316 -COMMA- denotes ,
T17817 312-315 NN denotes VWR
T17816 311-312 -LRB- denotes (
T17815 304-310 NN denotes slides
T17814 295-303 VB denotes modified
T17813 288-294 VB denotes charge
T17812 285-287 TO denotes to
T17811 277-284 VB denotes adhered
T17810 273-276 CC denotes and
T17809 271-272 -COMMA- denotes ,
T17808 269-271 NN denotes μm
T17807 267-268 CD denotes 5
T17806 264-266 IN denotes at
T17805 254-263 VB denotes sectioned
T17804 252-253 -COMMA- denotes ,
T17803 244-252 NN denotes paraffin
T17802 241-243 IN denotes in
T17801 232-240 VB denotes embedded
T17800 230-231 -COMMA- denotes ,
T17799 214-230 NN denotes paraformaldehyde
T17798 212-213 NN denotes %
T17797 211-212 CD denotes 4
T17796 208-210 IN denotes in
T17795 198-207 NN denotes immersion
T17794 195-197 IN denotes by
T17793 185-194 RB denotes overnight
T17792 179-184 VB denotes fixed
T17791 174-178 VB denotes were
T17790 166-173 NN denotes Embryos
T17789 155-164 CD denotes 1353–1927
T17788 143-154 NN denotes nucleotides
T17787 138-142 NN denotes Sox6
T17786 132-137 NN denotes mouse
T17785 128-131 CC denotes and
T17784 126-127 -COLON- denotes ;
T17783 119-126 CD denotes 458–549
T17782 107-118 NN denotes nucleotides
T17781 100-106 NN denotes globin
T17780 95-99 SYM denotes βmaj
T17779 93-94 -COLON- denotes ;
T17778 86-93 CD denotes 509–584
T17777 74-85 NN denotes nucleotides
T17776 67-73 NN denotes globin
T17775 64-66 JJ denotes ɛy
T17774 57-63 JJ denotes murine
T17773 54-56 TO denotes to
T17772 45-53 VB denotes designed
T17771 40-44 VB denotes were
T17770 33-39 NN denotes probes
T17769 23-32 JJ denotes Antisense
T17768 8-21 NN denotes hybridization
T17767 3-7 FW denotes situ
T17766 0-2 FW denotes In
R12381 T17767 T17766 arg1Of situ,In
R12382 T17768 T17767 arg1Of hybridization,situ
R12383 T17770 T17769 arg1Of probes,Antisense
R12384 T17770 T17771 arg1Of probes,were
R12385 T17770 T17772 arg2Of probes,designed
R12386 T17772 T17771 arg2Of designed,were
R12387 T17772 T17773 arg1Of designed,to
R12388 T17777 T17774 arg1Of nucleotides,murine
R12389 T17777 T17775 arg1Of nucleotides,ɛy
R12390 T17777 T17776 arg1Of nucleotides,globin
R12391 T17777 T17778 arg1Of nucleotides,509–584
R12392 T17777 T17779 arg1Of nucleotides,;
R12393 T17779 T17773 arg2Of ;,to
R12394 T17782 T17780 arg1Of nucleotides,βmaj
R12395 T17782 T17781 arg1Of nucleotides,globin
R12396 T17782 T17783 arg1Of nucleotides,458–549
R12397 T17782 T17785 arg1Of nucleotides,and
R12398 T17785 T17779 arg2Of and,;
R12399 T17785 T17784 arg1Of and,;
R12400 T17788 T17785 arg2Of nucleotides,and
R12401 T17788 T17786 arg1Of nucleotides,mouse
R12402 T17788 T17787 arg1Of nucleotides,Sox6
R12403 T17788 T17789 arg1Of nucleotides,1353–1927
R12404 T17790 T17791 arg1Of Embryos,were
R12405 T17790 T17792 arg2Of Embryos,fixed
R12406 T17790 T17811 arg1Of Embryos,adhered
R12407 T17792 T17791 arg2Of fixed,were
R12408 T17792 T17793 arg1Of fixed,overnight
R12409 T17792 T17810 arg1Of fixed,and
R12410 T17795 T17792 arg1Of immersion,fixed
R12411 T17795 T17794 arg2Of immersion,by
R12412 T17795 T17796 arg1Of immersion,in
R12413 T17795 T17800 arg1Of immersion,","
R12414 T17795 T17801 arg2Of immersion,embedded
R12415 T17795 T17804 arg1Of immersion,","
R12416 T17795 T17805 arg2Of immersion,sectioned
R12417 T17797 T17798 arg1Of 4,%
R12418 T17799 T17796 arg2Of paraformaldehyde,in
R12419 T17799 T17797 arg1Of paraformaldehyde,4
R12420 T17801 T17802 arg1Of embedded,in
R12421 T17803 T17802 arg2Of paraffin,in
R12422 T17805 T17806 arg1Of sectioned,at
R12423 T17808 T17806 arg2Of μm,at
R12424 T17808 T17807 arg1Of μm,5
R12425 T17810 T17809 arg1Of and,","
R12426 T17811 T17810 arg2Of adhered,and
R12427 T17813 T17811 arg2Of charge,adhered
R12428 T17813 T17812 arg1Of charge,to
R12429 T17815 T17813 arg2Of slides,charge
R12430 T17815 T17814 arg2Of slides,modified
R12431 T17815 T17816 arg1Of slides,(
R12432 T17817 T17818 arg1Of VWR,","
R12433 T17817 T17821 arg1Of VWR,","
R12434 T17820 T17818 arg2Of Chester,","
R12435 T17820 T17819 arg1Of Chester,West
R12436 T17821 T17816 arg2Of ",",(
R12437 T17821 T17823 arg1Of ",",","
R12438 T17822 T17821 arg2Of Pennsylvania,","
R12439 T17825 T17823 arg2Of States,","
R12440 T17825 T17824 arg1Of States,United
R12441 T17826 T17816 arg3Of ),(
R12442 T17827 T17828 arg1Of Slides,were
R12443 T17827 T17829 arg2Of Slides,processed
R12444 T17829 T17828 arg2Of processed,were
R12445 T17829 T17830 arg1Of processed,for
R12446 T17829 T17834 arg1Of processed,as
R12447 T17832 T17831 arg1Of situ,in
R12448 T17833 T17830 arg2Of hybridization,for
R12449 T17833 T17832 arg1Of hybridization,situ
R12450 T17835 T17834 arg2Of described,as
R12451 T17835 T17836 arg1Of described,[
R12452 T17835 T17839 modOf described,using
R12453 T17837 T17836 arg2Of 52,[
R12454 T17838 T17836 arg3Of ],[
R12455 T17841 T17840 arg1Of vitro,in
R12456 T17844 T17839 arg2Of probes,using
R12457 T17844 T17841 arg1Of probes,vitro
R12458 T17844 T17842 arg2Of probes,transcribed
R12459 T17844 T17843 arg1Of probes,RNA
R12460 T17844 T17845 arg2Of probes,labeled
R12461 T17845 T17846 arg1Of labeled,with
R12462 T17847 T17846 arg2Of 33P,with
R12463 T17848 T17849 arg1Of Darkfield,and
R12464 T17850 T17849 arg2Of brightfield,and
R12465 T17851 T17848 arg1Of images,Darkfield
R12466 T17851 T17850 arg1Of images,brightfield
R12467 T17851 T17852 arg1Of images,were
R12468 T17851 T17853 arg2Of images,obtained
R12469 T17853 T17852 arg2Of obtained,were
R12470 T17853 T17854 arg1Of obtained,with
R12471 T17857 T17856 arg1Of Optiphot,Nikon
R12472 T17858 T17857 arg1Of microscope,Optiphot
R12473 T17858 T17859 arg1Of microscope,(
R12474 T17858 T17870 arg1Of microscope,and
R12475 T17860 T17861 arg1Of Nikon,","
R12476 T17861 T17863 arg1Of ",",","
R12477 T17862 T17861 arg2Of Melville,","
R12478 T17863 T17866 arg1Of ",",","
R12479 T17865 T17863 arg2Of York,","
R12480 T17865 T17864 arg1Of York,New
R12481 T17866 T17859 arg2Of ",",(
R12482 T17868 T17866 arg2Of States,","
R12483 T17868 T17867 arg1Of States,United
R12484 T17869 T17859 arg3Of ),(
R12485 T17870 T17854 arg2Of and,with
R12486 T17870 T17855 arg1Of and,a
R12487 T17870 T17875 arg1Of and,(
R12488 T17874 T17870 arg2Of camera,and
R12489 T17874 T17871 arg1Of camera,SPOT
R12490 T17874 T17872 arg1Of camera,RT-Slider
R12491 T17874 T17873 arg1Of camera,digital
R12492 T17877 T17878 arg1Of Instruments,","
R12493 T17878 T17881 arg1Of ",",","
R12494 T17880 T17878 arg2Of Heights,","
R12495 T17880 T17879 arg1Of Heights,Sterling
R12496 T17881 T17876 arg1Of ",",Diagnostic
R12497 T17881 T17883 arg1Of ",",","
R12498 T17882 T17881 arg2Of Michigan,","
R12499 T17883 T17875 arg2Of ",",(
R12500 T17885 T17883 arg2Of States,","
R12501 T17885 T17884 arg1Of States,United
R12502 T17886 T17875 arg3Of ),(
R12503 T17887 T17888 arg2Of Objectives,used
R12504 T17887 T17889 arg1Of Objectives,were
R12505 T17890 T17891 arg1Of 1×,(
R12506 T17890 T17896 arg1Of 1×,and
R12507 T17892 T17891 arg2Of NA,(
R12508 T17892 T17893 arg1Of NA,=
R12509 T17892 T17894 arg1Of NA,0.04
R12510 T17895 T17891 arg3Of ),(
R12511 T17896 T17889 arg2Of and,were
R12512 T17897 T17896 arg2Of 10×,and
R12513 T17897 T17898 arg1Of 10×,(
R12514 T17899 T17898 arg2Of NA,(
R12515 T17899 T17900 arg1Of NA,=
R12516 T17899 T17901 arg1Of NA,0.5
R12517 T17902 T17898 arg3Of ),(
R12518 T17903 T17904 arg1Of Images,were
R12519 T17903 T17905 arg2Of Images,processed
R12520 T17903 T17907 arg2Of Images,pseudocolored
R12521 T17903 T17910 arg2Of Images,combined
R12522 T17905 T17906 arg1Of processed,","
R12523 T17906 T17909 arg1Of ",",and
R12524 T17907 T17906 arg2Of pseudocolored,","
R12525 T17909 T17904 arg2Of and,were
R12526 T17909 T17908 arg1Of and,","
R12527 T17909 T17940 arg2Of and,plugins
R12528 T17910 T17909 arg2Of combined,and
R12529 T17910 T17911 modOf combined,using
R12530 T17912 T17911 arg2Of Photoshop,using
R12531 T17912 T17913 arg1Of Photoshop,(
R12532 T17914 T17915 arg1Of Adobe,","
R12533 T17915 T17918 arg1Of ",",","
R12534 T17917 T17915 arg2Of Jose,","
R12535 T17917 T17916 arg1Of Jose,San
R12536 T17918 T17920 arg1Of ",",","
R12537 T17919 T17918 arg2Of California,","
R12538 T17920 T17913 arg2Of ",",(
R12539 T17922 T17920 arg2Of States,","
R12540 T17922 T17921 arg1Of States,United
R12541 T17923 T17913 arg3Of ),(
R12542 T17924 T17925 arg1Of software,with
R12543 T17924 T17940 arg1Of software,plugins
R12544 T17927 T17925 arg2Of Pro,with
R12545 T17927 T17926 arg1Of Pro,Fovea
R12546 T17927 T17928 arg1Of Pro,(
R12547 T17930 T17929 arg1Of Graphics,Reindeer
R12548 T17930 T17931 arg1Of Graphics,","
R12549 T17931 T17933 arg1Of ",",","
R12550 T17932 T17931 arg2Of Asheville,","
R12551 T17933 T17936 arg1Of ",",","
R12552 T17935 T17933 arg2Of Carolina,","
R12553 T17935 T17934 arg1Of Carolina,North
R12554 T17936 T17928 arg2Of ",",(
R12555 T17938 T17936 arg2Of States,","
R12556 T17938 T17937 arg1Of States,United
R12557 T17939 T17928 arg3Of ),(
R12558 T17942 T17941 arg1Of images,Original
R12559 T17942 T17943 arg1Of images,are
R12560 T17942 T17944 arg1Of images,available
R12561 T17944 T17943 arg2Of available,are

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T17759 138-142 Protein denotes Sox6
T17758 95-106 Protein denotes βmaj globin
T17757 64-73 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17945 138-142 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T17742 625-632 http://purl.obolibrary.org/obo/UBERON_0002544 denotes digital

GO-BP

Id Subject Object Predicate Lexical cue
T17753 615-617 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T17752 100-106 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T17751 67-73 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T17762 615-617 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T17761 100-106 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T17760 67-73 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T17745 166-360 Sentence denotes Embryos were fixed overnight by immersion in 4% paraformaldehyde, embedded in paraffin, sectioned at 5 μm, and adhered to charge modified slides (VWR, West Chester, Pennsylvania, United States).
T17744 23-165 Sentence denotes Antisense probes were designed to murine ɛy globin nucleotides 509–584; βmaj globin nucleotides 458–549; and mouse Sox6 nucleotides 1353–1927.
T17743 0-22 Sentence denotes In situ hybridization.
T17750 972-1002 Sentence denotes Original images are available.
T17749 765-971 Sentence denotes Images were processed, pseudocolored, and combined using Photoshop (Adobe, San Jose, California, United States) software with Fovea Pro (Reindeer Graphics, Asheville, North Carolina, United States) plugins.
T17748 709-764 Sentence denotes Objectives used were 1× (NA = 0.04) and 10× (NA = 0.5).
T17747 483-708 Sentence denotes Darkfield and brightfield images were obtained with a Nikon Optiphot microscope (Nikon, Melville, New York, United States) and SPOT RT-Slider digital camera (Diagnostic Instruments, Sterling Heights, Michigan, United States).
T17746 361-482 Sentence denotes Slides were processed for in situ hybridization as described [52] using in vitro transcribed RNA probes labeled with 33P.
T280 0-22 Sentence denotes In situ hybridization.
T281 23-165 Sentence denotes Antisense probes were designed to murine ɛy globin nucleotides 509–584; βmaj globin nucleotides 458–549; and mouse Sox6 nucleotides 1353–1927.
T282 166-360 Sentence denotes Embryos were fixed overnight by immersion in 4% paraformaldehyde, embedded in paraffin, sectioned at 5 μm, and adhered to charge modified slides (VWR, West Chester, Pennsylvania, United States).
T283 361-482 Sentence denotes Slides were processed for in situ hybridization as described [52] using in vitro transcribed RNA probes labeled with 33P.
T284 483-708 Sentence denotes Darkfield and brightfield images were obtained with a Nikon Optiphot microscope (Nikon, Melville, New York, United States) and SPOT RT-Slider digital camera (Diagnostic Instruments, Sterling Heights, Michigan, United States).
T285 709-764 Sentence denotes Objectives used were 1× (NA = 0.04) and 10× (NA = 0.5).
T286 765-971 Sentence denotes Images were processed, pseudocolored, and combined using Photoshop (Adobe, San Jose, California, United States) software with Fovea Pro (Reindeer Graphics, Asheville, North Carolina, United States) plugins.
T287 972-1002 Sentence denotes Original images are available.

simple1

Id Subject Object Predicate Lexical cue
T17765 138-142 Protein denotes Sox6
T17764 95-106 Protein denotes βmaj globin
T17763 64-73 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18169 138-142 Protein denotes Sox6
T18168 95-106 Protein denotes βmaj globin
T18167 64-73 Protein denotes ɛy globin

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17948 138-142 Protein denotes Sox6
T17947 95-106 Protein denotes βmaj globin
T17946 64-73 Protein denotes ɛy globin

DLUT931

Id Subject Object Predicate Lexical cue
T17957 138-142 Protein denotes Sox6
T17956 95-106 Protein denotes βmaj globin
T17955 64-73 Protein denotes ɛy globin

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18166 454-457 Protein denotes RNA
T18165 67-118 Protein denotes globin nucleotides 509–584; βmaj globin nucleotides
T18164 138-142 Protein denotes Sox6
T18163 361-367 Entity denotes Slides
T18162 67-118 Entity denotes globin nucleotides 509–584; βmaj globin nucleotides
T18161 244-253 Entity denotes paraffin,
T18160 67-118 Entity denotes globin nucleotides 509–584; βmaj globin nucleotides
T18159 211-231 Entity denotes 4% paraformaldehyde,
T18158 132-154 Entity denotes mouse Sox6 nucleotides
T18157 897-962 Entity denotes Pro (Reindeer Graphics, Asheville, North Carolina, United States)
T18156 67-73 Protein denotes globin

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18044 454-457 NNP denotes RNA
T18043 442-453 VBN denotes transcribed
T18042 436-441 NN denotes vitro
T18041 433-435 IN denotes in
T18040 427-432 VBG denotes using
T18039 425-426 NNP denotes ]
T18038 423-425 CD denotes 52
T18037 422-423 NNP denotes [
T18036 412-421 VBN denotes described
T18035 409-411 IN denotes as
T18034 395-408 NN denotes hybridization
T18033 390-394 NN denotes situ
T18032 387-389 IN denotes in
T18031 383-386 IN denotes for
T18030 373-382 VBN denotes processed
T18029 368-372 VBD denotes were
T18028 361-367 NNS denotes Slides
T18027 359-360 . denotes .
T18026 358-359 -RRB- denotes )
T18025 352-358 NNPS denotes States
T18024 345-351 NNP denotes United
T18023 343-344 , denotes ,
T18022 331-343 NNP denotes Pennsylvania
T18021 329-330 , denotes ,
T18020 322-329 NNP denotes Chester
T18019 317-321 NNP denotes West
T18018 315-316 , denotes ,
T18017 312-315 NNP denotes VWR
T18016 311-312 -LRB- denotes (
T18015 304-310 NNS denotes slides
T18014 295-303 VBN denotes modified
T18013 288-294 VB denotes charge
T18012 285-287 TO denotes to
T18011 277-284 VBD denotes adhered
T18010 273-276 CC denotes and
T18152 1001-1002 . denotes .
T18151 992-1001 JJ denotes available
T18150 988-991 VBP denotes are
T18149 981-987 NNS denotes images
T18148 972-980 NNP denotes Original
T18147 970-971 . denotes .
T18146 963-970 NNS denotes plugins
T18145 961-962 -RRB- denotes )
T18144 955-961 NNPS denotes States
T18143 948-954 NNP denotes United
T18142 946-947 , denotes ,
T18141 938-946 NNP denotes Carolina
T18140 932-937 NNP denotes North
T18139 930-931 , denotes ,
T18138 921-930 NNP denotes Asheville
T18137 919-920 , denotes ,
T18136 911-919 NNP denotes Graphics
T18135 902-910 NNP denotes Reindeer
T18134 901-902 -LRB- denotes (
T18133 897-900 FW denotes Pro
T18132 891-896 NNP denotes Fovea
T18131 886-890 IN denotes with
T18130 877-885 NN denotes software
T18129 875-876 -RRB- denotes )
T18128 869-875 NNPS denotes States
T18127 862-868 NNP denotes United
T18126 860-861 , denotes ,
T18125 850-860 NNP denotes California
T18124 848-849 , denotes ,
T18123 844-848 NNP denotes Jose
T18122 840-843 NNP denotes San
T18121 838-839 , denotes ,
T18120 833-838 NNP denotes Adobe
T18119 832-833 -LRB- denotes (
T18118 822-831 NNP denotes Photoshop
T18117 816-821 VBG denotes using
T18107 762-763 -RRB- denotes )
T18106 759-762 CD denotes 0.5
T18105 757-758 SYM denotes =
T18104 754-756 NNP denotes NA
T18103 753-754 -LRB- denotes (
T18102 751-752 NN denotes ×
T18101 749-751 CD denotes 10
T18100 745-748 CC denotes and
T18099 743-744 -RRB- denotes )
T18098 739-743 CD denotes 0.04
T18097 737-738 SYM denotes =
T18096 734-736 NNP denotes NA
T18095 733-734 -LRB- denotes (
T18094 731-732 NN denotes ×
T18093 730-731 CD denotes 1
T18092 725-729 VBD denotes were
T18091 720-724 VBN denotes used
T18090 709-719 NNS denotes Objectives
T18089 707-708 . denotes .
T18088 706-707 -RRB- denotes )
T18087 700-706 NNPS denotes States
T18086 693-699 NNP denotes United
T18085 691-692 , denotes ,
T18084 683-691 NNP denotes Michigan
T18083 681-682 , denotes ,
T18082 674-681 NNP denotes Heights
T18081 665-673 NNP denotes Sterling
T18080 663-664 , denotes ,
T18079 652-663 NNP denotes Instruments
T18078 641-651 NNP denotes Diagnostic
T18077 640-641 -LRB- denotes (
T18076 633-639 NN denotes camera
T18075 625-632 JJ denotes digital
T18074 615-624 JJ denotes RT-Slider
T18073 610-614 NNP denotes SPOT
T18072 606-609 CC denotes and
T18071 604-605 -RRB- denotes )
T18070 598-604 NNPS denotes States
T18069 591-597 NNP denotes United
T18068 589-590 , denotes ,
T18067 585-589 NNP denotes York
T18066 581-584 NNP denotes New
T18065 579-580 , denotes ,
T18064 571-579 NNP denotes Melville
T18063 569-570 , denotes ,
T18062 564-569 NNP denotes Nikon
T18061 563-564 -LRB- denotes (
T18060 552-562 NN denotes microscope
T18059 543-551 NNP denotes Optiphot
T18058 537-542 NNP denotes Nikon
T18057 535-536 DT denotes a
T18056 530-534 IN denotes with
T18055 521-529 VBN denotes obtained
T18054 516-520 VBD denotes were
T18053 509-515 NNS denotes images
T18052 497-508 JJ denotes brightfield
T18051 493-496 CC denotes and
T18050 483-492 NNP denotes Darkfield
T18049 481-482 . denotes .
T18048 478-481 NNP denotes 33P
T18047 473-477 IN denotes with
T18046 465-472 VBN denotes labeled
T18045 458-464 NNS denotes probes
T18002 241-243 IN denotes in
T18001 232-240 VBN denotes embedded
T18009 271-272 , denotes ,
T18008 269-271 NN denotes μm
T18007 267-268 CD denotes 5
T18006 264-266 IN denotes at
T18005 254-263 VBN denotes sectioned
T18004 252-253 , denotes ,
T18003 244-252 NN denotes paraffin
T18000 230-231 , denotes ,
T17999 214-230 NN denotes paraformaldehyde
T17998 212-213 NN denotes %
T17997 211-212 CD denotes 4
T17996 208-210 IN denotes in
T17995 198-207 NN denotes immersion
T17994 195-197 IN denotes by
T17993 185-194 RB denotes overnight
T17992 179-184 VBN denotes fixed
T17991 174-178 VBD denotes were
T17990 166-173 NNS denotes Embryos
T17989 164-165 . denotes .
T17988 160-164 CD denotes 1927
T17987 155-159 CD denotes 1353
T17986 143-154 NNS denotes nucleotides
T17985 138-142 JJ denotes Sox6
T17984 132-137 NN denotes mouse
T17983 128-131 CC denotes and
T17982 126-127 : denotes ;
T17981 123-126 CD denotes 549
T17980 119-122 CD denotes 458
T17979 107-118 NNS denotes nucleotides
T17978 100-106 NN denotes globin
T17977 95-99 NN denotes βmaj
T17976 93-94 : denotes ;
T17975 90-93 CD denotes 584
T17974 86-89 CD denotes 509
T17973 74-85 NNS denotes nucleotides
T17972 67-73 NN denotes globin
T17971 64-66 JJ denotes ɛy
T17970 57-63 VB denotes murine
T17969 54-56 TO denotes to
T17968 45-53 VBN denotes designed
T17967 40-44 VBD denotes were
T17966 33-39 NNS denotes probes
T17965 23-32 JJ denotes Antisense
T17964 21-22 . denotes .
T17963 8-21 NN denotes hybridization
T17962 3-7 NN denotes situ
T17961 0-2 IN denotes In
T18116 807-815 VBN denotes combined
T18115 803-806 CC denotes and
T18114 801-802 , denotes ,
T18113 788-801 VBN denotes pseudocolored
T18112 786-787 , denotes ,
T18111 777-786 VBN denotes processed
T18110 772-776 VBD denotes were
T18109 765-771 NNS denotes Images
T18108 763-764 . denotes .
R12582 T17981 T17979 dep 549,nucleotides
R12583 T17982 T17979 punct ;,nucleotides
R12584 T17983 T17979 cc and,nucleotides
R12585 T17984 T17986 nmod mouse,nucleotides
R12586 T17985 T17986 compound Sox6,nucleotides
R12587 T17986 T17979 conj nucleotides,nucleotides
R12588 T17987 T17979 dep 1353,nucleotides
R12589 T17988 T17979 appos 1927,nucleotides
R12590 T17989 T17977 punct .,βmaj
R12591 T17990 T17992 nsubjpass Embryos,fixed
R12592 T17991 T17992 auxpass were,fixed
R12593 T17992 T17992 ROOT fixed,fixed
R12594 T17993 T17992 advmod overnight,fixed
R12595 T17994 T17992 agent by,fixed
R12596 T17995 T17994 pobj immersion,by
R12597 T17996 T17992 prep in,fixed
R12598 T17997 T17998 nummod 4,%
R12599 T17998 T17999 compound %,paraformaldehyde
R12600 T17999 T17996 pobj paraformaldehyde,in
R12601 T18000 T17992 punct ",",fixed
R12602 T18001 T17992 conj embedded,fixed
R12603 T18002 T18001 prep in,embedded
R12604 T18003 T18002 pobj paraffin,in
R12605 T18004 T17992 punct ",",fixed
R12606 T18005 T17992 conj sectioned,fixed
R12607 T18006 T18005 prep at,sectioned
R12608 T18007 T18008 nummod 5,μm
R12609 T18008 T18006 pobj μm,at
R12610 T18009 T17992 punct ",",fixed
R12611 T18010 T17992 cc and,fixed
R12612 T18011 T17992 conj adhered,fixed
R12613 T18012 T18013 aux to,charge
R12614 T18013 T18011 xcomp charge,adhered
R12615 T18014 T18015 amod modified,slides
R12616 T18015 T18013 dobj slides,charge
R12617 T18016 T18017 punct (,VWR
R12618 T18017 T18015 appos VWR,slides
R12619 T18018 T18017 punct ",",VWR
R12620 T18019 T18020 compound West,Chester
R12621 T18020 T18017 conj Chester,VWR
R12622 T18021 T18020 punct ",",Chester
R12623 T18022 T18020 conj Pennsylvania,Chester
R12624 T18023 T18022 punct ",",Pennsylvania
R12625 T18024 T18025 compound United,States
R12626 T18025 T18022 conj States,Pennsylvania
R12627 T18026 T18015 punct ),slides
R12628 T18027 T17992 punct .,fixed
R12629 T18028 T18030 nsubjpass Slides,processed
R12630 T18029 T18030 auxpass were,processed
R12631 T18030 T18030 ROOT processed,processed
R12632 T18031 T18030 prep for,processed
R12633 T18032 T18030 prep in,processed
R12634 T18033 T18034 compound situ,hybridization
R12635 T18034 T18032 pobj hybridization,in
R12636 T18035 T18036 mark as,described
R12637 T18036 T18030 advcl described,processed
R12638 T18037 T18039 nmod [,]
R12639 T18038 T18039 nummod 52,]
R12640 T18039 T18036 dobj ],described
R12641 T18040 T18036 advcl using,described
R12642 T18041 T18040 prep in,using
R12643 T18042 T18041 pobj vitro,in
R12644 T18043 T18045 amod transcribed,probes
R12645 T18044 T18045 compound RNA,probes
R12646 T18045 T18040 dobj probes,using
R12647 T18046 T18045 acl labeled,probes
R12648 T18047 T18046 prep with,labeled
R12649 T18048 T18047 pobj 33P,with
R12650 T18049 T18030 punct .,processed
R12651 T18050 T18053 nmod Darkfield,images
R12652 T18051 T18050 cc and,Darkfield
R12653 T18052 T18050 conj brightfield,Darkfield
R12654 T18053 T18055 nsubjpass images,obtained
R12655 T18054 T18055 auxpass were,obtained
R12656 T18055 T18055 ROOT obtained,obtained
R12657 T18056 T18055 prep with,obtained
R12658 T18057 T18060 det a,microscope
R12659 T18058 T18060 compound Nikon,microscope
R12660 T18059 T18060 compound Optiphot,microscope
R12661 T18060 T18056 pobj microscope,with
R12662 T18061 T18062 punct (,Nikon
R12663 T18062 T18076 nmod Nikon,camera
R12664 T18063 T18062 punct ",",Nikon
R12665 T18064 T18062 conj Melville,Nikon
R12666 T18065 T18064 punct ",",Melville
R12667 T18066 T18067 compound New,York
R12668 T18067 T18064 conj York,Melville
R12669 T18068 T18067 punct ",",York
R12670 T18069 T18070 compound United,States
R12671 T18070 T18067 conj States,York
R12672 T18071 T18070 punct ),States
R12673 T18072 T18070 cc and,States
R12674 T18073 T18076 nmod SPOT,camera
R12675 T18074 T18076 amod RT-Slider,camera
R12676 T18075 T18076 amod digital,camera
R12677 T18076 T18060 appos camera,microscope
R12678 T18077 T18079 punct (,Instruments
R12679 T18078 T18079 compound Diagnostic,Instruments
R12680 T18079 T18076 appos Instruments,camera
R12681 T18080 T18079 punct ",",Instruments
R12682 T18081 T18082 compound Sterling,Heights
R12683 T18082 T18079 conj Heights,Instruments
R12684 T18083 T18082 punct ",",Heights
R12685 T18084 T18082 conj Michigan,Heights
R12686 T18085 T18084 punct ",",Michigan
R12687 T18086 T18087 compound United,States
R12688 T18087 T18084 conj States,Michigan
R12689 T18088 T18079 punct ),Instruments
R12690 T18089 T18055 punct .,obtained
R12691 T18090 T18092 nsubj Objectives,were
R12692 T18091 T18090 acl used,Objectives
R12693 T18092 T18092 ROOT were,were
R12694 T18093 T18094 nummod 1,×
R12695 T18094 T18092 attr ×,were
R12696 T18095 T18098 punct (,0.04
R12697 T18096 T18098 dep NA,0.04
R12698 T18097 T18098 punct =,0.04
R12699 T18098 T18094 parataxis 0.04,×
R12700 T18099 T18098 punct ),0.04
R12701 T18100 T18098 cc and,0.04
R12702 T18101 T18102 nummod 10,×
R12703 T18102 T18098 conj ×,0.04
R12704 T18103 T18102 punct (,×
R12705 T18104 T18107 nmod NA,)
R12706 T18105 T18106 punct =,0.5
R12707 T18106 T18104 nummod 0.5,NA
R12708 T18107 T18102 punct ),×
R12709 T18108 T18092 punct .,were
R12710 T18109 T18111 nsubjpass Images,processed
R12711 T18110 T18111 auxpass were,processed
R12712 T18111 T18111 ROOT processed,processed
R12713 T18112 T18111 punct ",",processed
R12714 T18113 T18111 conj pseudocolored,processed
R12715 T18114 T18113 punct ",",pseudocolored
R12716 T18115 T18113 cc and,pseudocolored
R12717 T18116 T18113 conj combined,pseudocolored
R12718 T18117 T18116 advcl using,combined
R12719 T18118 T18117 dobj Photoshop,using
R12720 T18119 T18120 punct (,Adobe
R12721 T18120 T18118 appos Adobe,Photoshop
R12722 T18121 T18120 punct ",",Adobe
R12723 T18122 T18123 compound San,Jose
R12724 T18123 T18120 npadvmod Jose,Adobe
R12725 T18124 T18123 punct ",",Jose
R12726 T18125 T18123 conj California,Jose
R12727 T18126 T18125 punct ",",California
R12728 T18127 T18128 compound United,States
R12729 T18128 T18125 appos States,California
R12730 T18129 T18125 punct ),California
R12731 T18130 T18118 conj software,Photoshop
R12732 T18131 T18117 prep with,using
R12733 T18132 T18136 nmod Fovea,Graphics
R12734 T18133 T18136 nmod Pro,Graphics
R12735 T18134 T18136 punct (,Graphics
R12736 T18135 T18136 compound Reindeer,Graphics
R12737 T18136 T18146 nmod Graphics,plugins
R12738 T18137 T18136 punct ",",Graphics
R12739 T18138 T18146 nmod Asheville,plugins
R12740 T18139 T18138 punct ",",Asheville
R12741 T18140 T18141 compound North,Carolina
R12742 T18141 T18138 conj Carolina,Asheville
R12743 T18142 T18141 punct ",",Carolina
R12744 T18143 T18144 compound United,States
R12745 T18144 T18141 appos States,Carolina
R12746 T18145 T18146 punct ),plugins
R12747 T18146 T18131 pobj plugins,with
R12748 T18147 T18111 punct .,processed
R12749 T18148 T18149 amod Original,images
R12750 T18149 T18150 nsubj images,are
R12751 T18150 T18150 ROOT are,are
R12752 T18151 T18150 acomp available,are
R12753 T18152 T18150 punct .,are
R12562 T17961 T17961 ROOT In,In
R12563 T17962 T17963 compound situ,hybridization
R12564 T17963 T17961 pobj hybridization,In
R12565 T17964 T17963 punct .,hybridization
R12566 T17965 T17966 compound Antisense,probes
R12567 T17966 T17968 nsubjpass probes,designed
R12568 T17967 T17968 auxpass were,designed
R12569 T17968 T17968 ROOT designed,designed
R12570 T17969 T17970 aux to,murine
R12571 T17970 T17968 xcomp murine,designed
R12572 T17971 T17973 amod ɛy,nucleotides
R12573 T17972 T17973 compound globin,nucleotides
R12574 T17973 T17970 dobj nucleotides,murine
R12575 T17974 T17970 npadvmod 509,murine
R12576 T17975 T17970 meta 584,murine
R12577 T17976 T17968 punct ;,designed
R12578 T17977 T17968 conj βmaj,designed
R12579 T17978 T17979 compound globin,nucleotides
R12580 T17979 T17977 dobj nucleotides,βmaj
R12581 T17980 T17979 nummod 458,nucleotides

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17954 610-617 Protein denotes SPOT RT
T17953 138-142 Protein denotes Sox6
T17952 57-106 Protein denotes murine ɛy globin nucleotides 509–584; βmaj globin

testone

Id Subject Object Predicate Lexical cue
T17735 138-142 Protein denotes Sox6
T17734 95-106 Protein denotes βmaj globin
T17733 64-73 Protein denotes ɛy globin

test3

Id Subject Object Predicate Lexical cue
T17741 138-142 Protein denotes Sox6
T17740 95-106 Protein denotes βmaj globin
T17739 64-73 Protein denotes ɛy globin
T17738 138-142 Protein denotes Sox6
T17737 95-106 Protein denotes βmaj globin
T17736 64-73 Protein denotes ɛy globin