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PMC:1359074 / 34446-34678 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-2748594-85761023 54-56 2748594 denotes 31
T59528 54-56 2748594 denotes 31

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16256 223-231 NN denotes promoter
T16255 220-222 JJ denotes ɛy
T16254 216-219 DT denotes the
T16253 213-215 IN denotes by
T16252 206-212 VB denotes driven
T16251 203-205 VB denotes is
T16250 192-202 NN denotes expression
T16249 181-191 NN denotes luciferase
T16248 175-180 WDT denotes which
T16247 172-174 IN denotes in
T16246 162-171 NN denotes construct
T16245 153-161 NN denotes reporter
T16244 151-152 DT denotes a
T16243 148-150 IN denotes in
T16242 138-147 VB denotes resulting
T16241 136-137 -COMMA- denotes ,
T16240 129-136 NN denotes plasmid
T16239 123-128 JJ denotes Basic
T16238 118-122 NN denotes pGL3
T16237 112-117 JJ denotes above
T16236 108-111 DT denotes the
T16235 105-107 IN denotes in
T16234 96-104 NN denotes promoter
T16233 93-95 JJ denotes ɛy
T16232 89-92 DT denotes the
T16231 86-88 IN denotes of
T16230 77-85 RB denotes upstream
T16229 68-76 VB denotes inserted
T16228 63-67 RB denotes then
T16227 59-62 VB denotes was
T16226 57-58 -RRB- denotes )
T16225 56-57 -RRB- denotes ]
T16224 54-56 CD denotes 31
T16223 53-54 -LRB- denotes [
T16222 51-52 -COLON- denotes ;
T16221 48-51 NN denotes LCR
T16220 42-47 NN denotes micro
T16219 41-42 -LRB- denotes (
T16218 37-40 CD denotes 9.3
T16217 31-36 NN denotes μLCRβ
T16216 28-30 IN denotes of
T16215 19-27 NN denotes fragment
T16214 9-18 NN denotes SstI/XhoI
T16213 2-8 JJ denotes 2.5-kb
T16212 0-1 DT denotes A
R11223 T16215 T16212 arg1Of fragment,A
R11224 T16215 T16213 arg1Of fragment,2.5-kb
R11225 T16215 T16214 arg1Of fragment,SstI/XhoI
R11226 T16215 T16216 arg1Of fragment,of
R11227 T16215 T16219 arg1Of fragment,(
R11228 T16215 T16227 arg1Of fragment,was
R11229 T16215 T16229 arg2Of fragment,inserted
R11230 T16217 T16216 arg2Of μLCRβ,of
R11231 T16217 T16218 arg1Of μLCRβ,9.3
R11232 T16221 T16220 arg1Of LCR,micro
R11233 T16221 T16222 arg1Of LCR,;
R11234 T16222 T16219 arg2Of ;,(
R11235 T16224 T16222 arg2Of 31,;
R11236 T16224 T16223 arg2Of 31,[
R11237 T16225 T16223 arg3Of ],[
R11238 T16226 T16219 arg3Of ),(
R11239 T16229 T16227 arg2Of inserted,was
R11240 T16229 T16228 arg1Of inserted,then
R11241 T16229 T16230 arg1Of inserted,upstream
R11242 T16229 T16235 arg1Of inserted,in
R11243 T16229 T16241 arg1Of inserted,","
R11244 T16229 T16242 modOf inserted,resulting
R11245 T16230 T16231 arg1Of upstream,of
R11246 T16234 T16231 arg2Of promoter,of
R11247 T16234 T16232 arg1Of promoter,the
R11248 T16234 T16233 arg1Of promoter,ɛy
R11249 T16239 T16238 arg1Of Basic,pGL3
R11250 T16240 T16235 arg2Of plasmid,in
R11251 T16240 T16236 arg1Of plasmid,the
R11252 T16240 T16237 arg1Of plasmid,above
R11253 T16240 T16239 arg1Of plasmid,Basic
R11254 T16242 T16243 arg1Of resulting,in
R11255 T16246 T16243 arg2Of construct,in
R11256 T16246 T16244 arg1Of construct,a
R11257 T16246 T16245 arg1Of construct,reporter
R11258 T16246 T16247 arg2Of construct,in
R11259 T16246 T16248 arg1Of construct,which
R11260 T16250 T16249 arg1Of expression,luciferase
R11261 T16250 T16251 arg1Of expression,is
R11262 T16250 T16252 arg2Of expression,driven
R11263 T16252 T16247 arg1Of driven,in
R11264 T16252 T16251 arg2Of driven,is
R11265 T16256 T16252 arg1Of promoter,driven
R11266 T16256 T16253 arg2Of promoter,by
R11267 T16256 T16254 arg1Of promoter,the
R11268 T16256 T16255 arg1Of promoter,ɛy

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16047 220-222 Protein denotes ɛy
T16046 181-191 Protein denotes luciferase
T16045 93-95 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16445 181-191 http://www.uniprot.org/uniprot/P08659 denotes luciferase

sentences

Id Subject Object Predicate Lexical cue
T16001 0-232 Sentence denotes A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter.
T257 0-232 Sentence denotes A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter.

simple1

Id Subject Object Predicate Lexical cue
T16066 220-222 Protein denotes ɛy
T16065 181-191 Protein denotes luciferase
T16064 93-95 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17094 206-212 Positive_regulation denotes driven
T17093 192-202 Gene_expression denotes expression
T17085 181-191 Protein denotes luciferase
T17084 93-95 Protein denotes ɛy
T17083 220-222 Protein denotes ɛy
R11933 T17085 T17093 themeOf luciferase,expression
R11935 T17093 T17094 themeOf expression,driven

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16470 192-202 Gene_expression denotes expression
T16460 181-191 Protein denotes luciferase
T16459 93-95 Protein denotes ɛy
T16458 220-222 Protein denotes ɛy
R11457 T16460 T16470 themeOf luciferase,expression

DLUT931

Id Subject Object Predicate Lexical cue
T16540 192-202 Gene_expression denotes expression
T16530 181-191 Protein denotes luciferase
T16529 93-95 Protein denotes ɛy
T16528 220-222 Protein denotes ɛy
R11471 T16530 T16540 themeOf luciferase,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17041 220-222 Protein denotes ɛy
T17040 93-95 Protein denotes ɛy
T17065 213-231 Entity denotes by the ɛy promoter
T17061 42-57 Protein denotes micro LCR; [31]
T17058 89-117 Entity denotes the ɛy promoter in the above
R11930 T17058 T17040 partOf the ɛy promoter in the above,ɛy
R11931 T17065 T17041 partOf by the ɛy promoter,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16752 231-232 . denotes .
T16751 223-231 NN denotes promoter
T16750 220-222 JJ denotes ɛy
T16749 216-219 DT denotes the
T16748 213-215 IN denotes by
T16747 206-212 VBN denotes driven
T16746 203-205 VBZ denotes is
T16745 192-202 NN denotes expression
T16744 181-191 NN denotes luciferase
T16743 175-180 WDT denotes which
T16742 172-174 IN denotes in
T16741 162-171 VB denotes construct
T16740 153-161 NN denotes reporter
T16739 151-152 DT denotes a
T16738 148-150 IN denotes in
T16737 138-147 VBG denotes resulting
T16736 136-137 , denotes ,
T16735 129-136 NN denotes plasmid
T16734 123-128 JJ denotes Basic
T16733 118-122 JJ denotes pGL3
T16732 112-117 JJ denotes above
T16731 108-111 DT denotes the
T16730 105-107 IN denotes in
T16729 96-104 NN denotes promoter
T16728 93-95 JJ denotes ɛy
T16727 89-92 DT denotes the
T16726 86-88 IN denotes of
T16725 77-85 RB denotes upstream
T16724 68-76 VBN denotes inserted
T16723 63-67 RB denotes then
T16722 59-62 VBD denotes was
T16721 57-58 -RRB- denotes )
T16720 56-57 NNP denotes ]
T16719 54-56 CD denotes 31
T16718 53-54 NNP denotes [
T16717 51-52 : denotes ;
T16716 48-51 NNP denotes LCR
T16715 42-47 NN denotes micro
T16714 41-42 -LRB- denotes (
T16713 37-40 CD denotes 9.3
T16712 31-36 NNP denotes μLCRβ
T16711 28-30 IN denotes of
T16710 19-27 NN denotes fragment
T16709 9-18 NNP denotes SstI/XhoI
T16708 2-8 JJ denotes 2.5-kb
T16707 0-1 DT denotes A
R11623 T16707 T16710 det A,fragment
R11624 T16708 T16710 amod 2.5-kb,fragment
R11625 T16709 T16710 compound SstI/XhoI,fragment
R11626 T16710 T16724 nsubjpass fragment,inserted
R11627 T16711 T16710 prep of,fragment
R11628 T16712 T16713 quantmod μLCRβ,9.3
R11629 T16713 T16711 pobj 9.3,of
R11630 T16714 T16724 punct (,inserted
R11631 T16715 T16716 compound micro,LCR
R11632 T16716 T16724 nsubjpass LCR,inserted
R11633 T16717 T16720 punct ;,]
R11634 T16718 T16720 compound [,]
R11635 T16719 T16720 nummod 31,]
R11636 T16720 T16716 appos ],LCR
R11637 T16721 T16720 punct ),]
R11638 T16722 T16724 auxpass was,inserted
R11639 T16723 T16724 advmod then,inserted
R11640 T16724 T16724 ROOT inserted,inserted
R11641 T16725 T16724 advmod upstream,inserted
R11642 T16726 T16725 prep of,upstream
R11643 T16727 T16729 det the,promoter
R11644 T16728 T16729 amod ɛy,promoter
R11645 T16729 T16726 pobj promoter,of
R11646 T16730 T16729 prep in,promoter
R11647 T16731 T16735 det the,plasmid
R11648 T16732 T16735 amod above,plasmid
R11649 T16733 T16735 amod pGL3,plasmid
R11650 T16734 T16735 amod Basic,plasmid
R11651 T16735 T16730 pobj plasmid,in
R11652 T16736 T16724 punct ",",inserted
R11653 T16737 T16724 advcl resulting,inserted
R11654 T16738 T16737 prep in,resulting
R11655 T16739 T16740 det a,reporter
R11656 T16740 T16738 pobj reporter,in
R11657 T16741 T16724 punct construct,inserted
R11658 T16742 T16747 prep in,driven
R11659 T16743 T16742 pobj which,in
R11660 T16744 T16745 amod luciferase,expression
R11661 T16745 T16747 nsubjpass expression,driven
R11662 T16746 T16747 auxpass is,driven
R11663 T16747 T16724 advcl driven,inserted
R11664 T16748 T16747 agent by,driven
R11665 T16749 T16751 det the,promoter
R11666 T16750 T16751 amod ɛy,promoter
R11667 T16751 T16748 pobj promoter,by
R11668 T16752 T16724 punct .,inserted

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16499 9-13 Protein denotes SstI
T16503 192-202 Gene_expression denotes expression
T16502 181-191 Protein denotes luciferase
T16501 31-40 Protein denotes μLCRβ 9.3
T16500 14-18 Protein denotes XhoI
R11463 T16502 T16503 themeOf luciferase,expression

testone

Id Subject Object Predicate Lexical cue
T15960 206-212 Positive_regulation denotes driven
T15959 192-202 Gene_expression denotes expression
T15951 220-222 Protein denotes ɛy
T15950 181-191 Protein denotes luciferase
T15949 93-95 Protein denotes ɛy
R11067 T15950 T15959 themeOf luciferase,expression
R11068 T15959 T15960 themeOf expression,driven

test3

Id Subject Object Predicate Lexical cue
T15988 220-222 Protein denotes ɛy
T15987 206-212 Positive_regulation denotes driven
T15986 192-202 Gene_expression denotes expression
T15985 181-191 Protein denotes luciferase
T15984 93-95 Protein denotes ɛy
T15970 220-222 Protein denotes ɛy
T15969 181-191 Protein denotes luciferase
T15968 93-95 Protein denotes ɛy
R11069 T15985 T15986 themeOf luciferase,expression
R11070 T15986 T15987 themeOf expression,driven