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PMC:1359074 / 34248-34445 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16184 49-53 WDT denotes that
T16183 43-48 NN denotes sites
T16182 35-42 NN denotes HindIII
T16181 31-34 CC denotes and
T16180 26-30 NN denotes XhoI
T16179 16-25 VB denotes contained
T16178 8-15 NN denotes primers
T16177 4-7 NN denotes PCR
T16176 0-3 DT denotes The
T16211 195-196 -RRB- denotes )
T16210 189-195 NNP denotes States
T16209 182-188 NNP denotes United
T16208 180-181 -COMMA- denotes ,
T16207 171-180 NNP denotes Wisconsin
T16206 169-170 -COMMA- denotes ,
T16205 162-169 NNP denotes Madison
T16204 160-161 -COMMA- denotes ,
T16203 153-160 NNP denotes Promega
T16202 152-153 -LRB- denotes (
T16201 146-151 JJ denotes Basic
T16200 141-145 NN denotes pGL3
T16199 138-140 IN denotes in
T16198 133-137 NN denotes gene
T16197 122-132 NN denotes luciferase
T16196 114-121 NN denotes firefly
T16195 110-113 DT denotes the
T16194 107-109 IN denotes of
T16193 98-106 RB denotes upstream
T16192 89-97 NN denotes fragment
T16191 80-88 NN denotes promoter
T16190 77-79 JJ denotes ɛy
T16189 73-76 DT denotes the
T16188 67-72 VB denotes clone
T16187 64-66 TO denotes to
T16186 59-63 VB denotes used
T16185 54-58 VB denotes were
R11186 T16178 T16176 arg1Of primers,The
R11187 T16178 T16177 arg1Of primers,PCR
R11188 T16178 T16179 arg1Of primers,contained
R11189 T16180 T16181 arg1Of XhoI,and
R11190 T16182 T16181 arg2Of HindIII,and
R11191 T16183 T16179 arg2Of sites,contained
R11192 T16183 T16180 arg1Of sites,XhoI
R11193 T16183 T16182 arg1Of sites,HindIII
R11194 T16183 T16184 arg1Of sites,that
R11195 T16183 T16185 arg1Of sites,were
R11196 T16183 T16186 arg2Of sites,used
R11197 T16186 T16185 arg2Of used,were
R11198 T16188 T16186 arg3Of clone,used
R11199 T16188 T16187 arg1Of clone,to
R11200 T16188 T16193 arg1Of clone,upstream
R11201 T16192 T16188 arg2Of fragment,clone
R11202 T16192 T16189 arg1Of fragment,the
R11203 T16192 T16190 arg1Of fragment,ɛy
R11204 T16192 T16191 arg1Of fragment,promoter
R11205 T16193 T16194 arg1Of upstream,of
R11206 T16198 T16194 arg2Of gene,of
R11207 T16198 T16195 arg1Of gene,the
R11208 T16198 T16196 arg1Of gene,firefly
R11209 T16198 T16197 arg1Of gene,luciferase
R11210 T16198 T16199 arg1Of gene,in
R11211 T16201 T16200 arg1Of Basic,pGL3
R11212 T16203 T16204 arg1Of Promega,","
R11213 T16204 T16206 arg1Of ",",","
R11214 T16205 T16204 arg2Of Madison,","
R11215 T16206 T16208 arg1Of ",",","
R11216 T16207 T16206 arg2Of Wisconsin,","
R11217 T16208 T16199 arg2Of ",",in
R11218 T16208 T16201 arg1Of ",",Basic
R11219 T16208 T16202 arg2Of ",",(
R11220 T16210 T16208 arg2Of States,","
R11221 T16210 T16209 arg1Of States,United
R11222 T16211 T16202 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16044 122-132 Protein denotes luciferase
T16043 77-79 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16444 122-132 http://www.uniprot.org/uniprot/P08659 denotes luciferase

sentences

Id Subject Object Predicate Lexical cue
T16000 0-197 Sentence denotes The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States).
T256 0-197 Sentence denotes The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States).

simple1

Id Subject Object Predicate Lexical cue
T16063 122-132 Protein denotes luciferase
T16062 77-79 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17082 122-132 Protein denotes luciferase
T17081 77-79 Protein denotes ɛy

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16456 77-79 Protein denotes ɛy
T16457 122-132 Protein denotes luciferase

DLUT931

Id Subject Object Predicate Lexical cue
T16527 122-132 Protein denotes luciferase
T16526 77-79 Protein denotes ɛy

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17053 146-196 Protein denotes Basic (Promega, Madison, Wisconsin, United States)
T17044 77-79 Protein denotes ɛy
T17043 26-30 Protein denotes XhoI
T17038 73-97 Entity denotes the ɛy promoter fragment
T17035 4-7 Protein denotes PCR
T17029 73-97 Entity denotes the ɛy promoter fragment
T17070 114-132 Protein denotes firefly luciferase
T17069 110-137 Protein denotes the firefly luciferase gene
T17056 35-48 Entity denotes HindIII sites
R11924 T17038 T17044 partOf the ɛy promoter fragment,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16706 196-197 . denotes .
T16705 195-196 -RRB- denotes )
T16704 189-195 NNPS denotes States
T16703 182-188 NNP denotes United
T16702 180-181 , denotes ,
T16701 171-180 NNP denotes Wisconsin
T16700 169-170 , denotes ,
T16699 162-169 NNP denotes Madison
T16698 160-161 , denotes ,
T16697 153-160 NNP denotes Promega
T16696 152-153 -LRB- denotes (
T16695 146-151 NNP denotes Basic
T16694 141-145 NNP denotes pGL3
T16693 138-140 IN denotes in
T16692 133-137 NN denotes gene
T16691 122-132 NN denotes luciferase
T16690 114-121 JJ denotes firefly
T16689 110-113 DT denotes the
T16688 107-109 IN denotes of
T16687 98-106 RB denotes upstream
T16686 89-97 NN denotes fragment
T16685 80-88 NN denotes promoter
T16684 77-79 JJ denotes ɛy
T16683 73-76 DT denotes the
T16682 67-72 VB denotes clone
T16681 64-66 TO denotes to
T16680 59-63 VBN denotes used
T16679 54-58 VBD denotes were
T16678 49-53 WDT denotes that
T16677 43-48 NNS denotes sites
T16676 35-42 NNP denotes HindIII
T16675 31-34 CC denotes and
T16674 26-30 NNP denotes XhoI
T16673 16-25 VBD denotes contained
T16672 8-15 NNS denotes primers
T16671 4-7 NNP denotes PCR
T16670 0-3 DT denotes The
R11586 T16670 T16672 det The,primers
R11587 T16671 T16672 compound PCR,primers
R11588 T16672 T16673 nsubj primers,contained
R11589 T16673 T16673 ROOT contained,contained
R11590 T16674 T16677 nmod XhoI,sites
R11591 T16675 T16674 cc and,XhoI
R11592 T16676 T16674 conj HindIII,XhoI
R11593 T16677 T16673 dobj sites,contained
R11594 T16678 T16680 nsubjpass that,used
R11595 T16679 T16680 auxpass were,used
R11596 T16680 T16677 relcl used,sites
R11597 T16681 T16682 aux to,clone
R11598 T16682 T16680 xcomp clone,used
R11599 T16683 T16686 det the,fragment
R11600 T16684 T16686 amod ɛy,fragment
R11601 T16685 T16686 compound promoter,fragment
R11602 T16686 T16682 dobj fragment,clone
R11603 T16687 T16682 advmod upstream,clone
R11604 T16688 T16687 prep of,upstream
R11605 T16689 T16692 det the,gene
R11606 T16690 T16692 amod firefly,gene
R11607 T16691 T16692 compound luciferase,gene
R11608 T16692 T16688 pobj gene,of
R11609 T16693 T16692 prep in,gene
R11610 T16694 T16695 compound pGL3,Basic
R11611 T16695 T16693 pobj Basic,in
R11612 T16696 T16699 punct (,Madison
R11613 T16697 T16699 nmod Promega,Madison
R11614 T16698 T16697 punct ",",Promega
R11615 T16699 T16692 appos Madison,gene
R11616 T16700 T16699 punct ",",Madison
R11617 T16701 T16699 npadvmod Wisconsin,Madison
R11618 T16702 T16701 punct ",",Wisconsin
R11619 T16703 T16704 compound United,States
R11620 T16704 T16701 appos States,Wisconsin
R11621 T16705 T16699 punct ),Madison
R11622 T16706 T16673 punct .,contained

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16498 16-25 Gene_expression denotes contained
T16497 16-25 Gene_expression denotes contained
T16496 141-145 Protein denotes pGL3
T16495 114-137 Protein denotes firefly luciferase gene
T16494 35-48 Protein denotes HindIII sites
T16493 26-30 Protein denotes XhoI
R11461 T16493 T16497 themeOf XhoI,contained
R11462 T16494 T16498 themeOf HindIII sites,contained

testone

Id Subject Object Predicate Lexical cue
T15948 122-132 Protein denotes luciferase
T15947 77-79 Protein denotes ɛy

test3

Id Subject Object Predicate Lexical cue
T15983 122-132 Protein denotes luciferase
T15982 77-79 Protein denotes ɛy
T15967 122-132 Protein denotes luciferase
T15966 77-79 Protein denotes ɛy