> top > docs > PMC:1359074 > spans > 33791-34064 > annotations

PMC:1359074 / 33791-34064 JSONTXT

Annnotations TAB JSON ListView MergeView

2_test

Id Subject Object Predicate Lexical cue
16462943-1737096-85761022 269-271 1737096 denotes 50
T43787 269-271 1737096 denotes 50

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16146 271-272 -RRB- denotes ]
T16145 269-271 CD denotes 50
T16144 268-269 -LRB- denotes [
T16143 263-267 NN denotes site
T16142 259-262 NN denotes cap
T16141 254-258 NN denotes gene
T16140 247-253 NN denotes globin
T16139 245-246 NN denotes ɛ
T16138 241-244 DT denotes the
T16137 238-240 IN denotes of
T16136 229-237 RB denotes upstream
T16135 220-228 NN denotes sequence
T16134 217-219 IN denotes of
T16133 214-216 NN denotes kb
T16132 212-213 CD denotes 2
T16131 206-211 IN denotes about
T16130 195-205 VB denotes containing
T16129 186-194 NN denotes fragment
T16128 180-185 NN denotes EcoRI
T16127 173-179 JJ denotes 3.7-kb
T16126 171-172 DT denotes a
T16125 164-170 IN denotes within
T16124 156-163 JJ denotes located
T16123 152-155 VB denotes are
T16122 142-151 NN denotes silencing
T16121 137-141 NN denotes gene
T16120 135-136 NN denotes ɛ
T16119 131-134 IN denotes for
T16118 122-130 VB denotes required
T16117 112-121 NN denotes sequences
T16116 108-111 DT denotes all
T16115 103-107 IN denotes that
T16114 97-102 VB denotes shown
T16113 92-96 VB denotes been
T16112 88-91 VB denotes has
T16111 85-87 PRP denotes it
T16110 77-84 IN denotes because
T16109 75-76 -COMMA- denotes ,
T16108 71-75 VB denotes used
T16107 67-70 VB denotes was
T16106 65-66 -RRB- denotes )
T16105 62-65 NN denotes ATG
T16104 61-62 -LRB- denotes (
T16103 55-60 NN denotes codon
T16102 44-54 NN denotes initiation
T16101 37-43 NN denotes globin
T16100 34-36 JJ denotes ɛy
T16099 30-33 DT denotes the
T16098 27-29 IN denotes of
T16097 18-26 RB denotes upstream
T16096 9-17 NN denotes fragment
T16095 2-8 JJ denotes 2.2-kb
T16094 0-1 DT denotes A
R11101 T16096 T16094 arg1Of fragment,A
R11102 T16096 T16095 arg1Of fragment,2.2-kb
R11103 T16096 T16097 arg1Of fragment,upstream
R11104 T16096 T16107 arg1Of fragment,was
R11105 T16096 T16108 arg2Of fragment,used
R11106 T16097 T16098 arg1Of upstream,of
R11107 T16103 T16098 arg2Of codon,of
R11108 T16103 T16099 arg1Of codon,the
R11109 T16103 T16100 arg1Of codon,ɛy
R11110 T16103 T16101 arg1Of codon,globin
R11111 T16103 T16102 arg1Of codon,initiation
R11112 T16103 T16104 arg1Of codon,(
R11113 T16105 T16104 arg2Of ATG,(
R11114 T16106 T16104 arg3Of ),(
R11115 T16108 T16107 arg2Of used,was
R11116 T16108 T16109 arg1Of used,","
R11117 T16108 T16110 arg1Of used,because
R11118 T16111 T16112 arg1Of it,has
R11119 T16111 T16113 arg1Of it,been
R11120 T16111 T16114 arg2Of it,shown
R11121 T16114 T16110 arg2Of shown,because
R11122 T16114 T16112 arg2Of shown,has
R11123 T16114 T16113 arg2Of shown,been
R11124 T16117 T16116 arg1Of sequences,all
R11125 T16117 T16118 arg2Of sequences,required
R11126 T16117 T16123 arg1Of sequences,are
R11127 T16117 T16124 arg1Of sequences,located
R11128 T16118 T16119 arg1Of required,for
R11129 T16122 T16119 arg2Of silencing,for
R11130 T16122 T16120 arg1Of silencing,ɛ
R11131 T16122 T16121 arg1Of silencing,gene
R11132 T16123 T16114 arg3Of are,shown
R11133 T16123 T16115 arg1Of are,that
R11134 T16124 T16123 arg2Of located,are
R11135 T16124 T16125 arg1Of located,within
R11136 T16129 T16125 arg2Of fragment,within
R11137 T16129 T16126 arg1Of fragment,a
R11138 T16129 T16127 arg1Of fragment,3.7-kb
R11139 T16129 T16128 arg1Of fragment,EcoRI
R11140 T16129 T16130 arg1Of fragment,containing
R11141 T16130 T16144 arg1Of containing,[
R11142 T16132 T16131 arg1Of 2,about
R11143 T16133 T16130 arg2Of kb,containing
R11144 T16133 T16132 arg1Of kb,2
R11145 T16133 T16134 arg1Of kb,of
R11146 T16133 T16136 arg1Of kb,upstream
R11147 T16135 T16134 arg2Of sequence,of
R11148 T16136 T16137 arg1Of upstream,of
R11149 T16143 T16137 arg2Of site,of
R11150 T16143 T16138 arg1Of site,the
R11151 T16143 T16139 arg1Of site,ɛ
R11152 T16143 T16140 arg1Of site,globin
R11153 T16143 T16141 arg1Of site,gene
R11154 T16143 T16142 arg1Of site,cap
R11155 T16145 T16144 arg2Of 50,[
R11156 T16146 T16144 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16042 245-253 Protein denotes ɛ globin
T16041 135-136 Protein denotes ɛ
T16040 34-43 Protein denotes ɛy globin

GO-BP

Id Subject Object Predicate Lexical cue
T16011 137-151 http://purl.obolibrary.org/obo/GO_0016458 denotes gene silencing
T16010 247-253 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T16009 37-43 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T16055 247-253 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T16054 37-43 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T15997 0-273 Sentence denotes A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50].
T253 0-273 Sentence denotes A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50].

simple1

Id Subject Object Predicate Lexical cue
T16061 245-253 Protein denotes ɛ globin
T16060 135-136 Protein denotes ɛ
T16059 34-43 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17092 142-151 Negative_regulation denotes silencing
T17080 245-253 Protein denotes ɛ globin
T17079 135-136 Protein denotes ɛ
T17078 34-43 Protein denotes ɛy globin
R11932 T17079 T17092 themeOf ɛ,silencing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16455 245-253 Protein denotes ɛ globin
T16454 135-136 Protein denotes ɛ
T16453 34-43 Protein denotes ɛy globin
T16469 122-130 Positive_regulation denotes required
T16468 142-151 Negative_regulation denotes silencing
R11456 T16454 T16468 themeOf ɛ,silencing
R11460 T16468 T16469 themeOf silencing,required

DLUT931

Id Subject Object Predicate Lexical cue
T16539 122-130 Positive_regulation denotes required
T16538 142-151 Negative_regulation denotes silencing
T16525 245-253 Protein denotes ɛ globin
T16524 135-136 Protein denotes ɛ
T16523 34-43 Protein denotes ɛy globin
R11470 T16524 T16538 themeOf ɛ,silencing
R11474 T16538 T16539 themeOf silencing,required

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17051 263-272 Entity denotes site [50]
T17050 37-43 Protein denotes globin
T17048 247-253 Protein denotes globin
T17033 241-262 Protein denotes the ɛ globin gene cap
T17032 171-216 Entity denotes a 3.7-kb EcoRI fragment containing about 2 kb
T17071 30-66 Positive_regulation denotes the ɛy globin initiation codon (ATG)
T17064 135-151 Protein denotes ɛ gene silencing
T17063 245-246 Protein denotes ɛ
T17057 34-36 Protein denotes ɛy
R11928 T17050 T17071 themeOf globin,the ɛy globin initiation codon (ATG)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16635 268-269 NNP denotes [
T16634 263-267 NN denotes site
T16633 259-262 NN denotes cap
T16632 254-258 NN denotes gene
T16631 247-253 NN denotes globin
T16630 245-246 NN denotes ɛ
T16629 241-244 DT denotes the
T16628 238-240 IN denotes of
T16627 229-237 RB denotes upstream
T16626 220-228 NN denotes sequence
T16625 217-219 IN denotes of
T16624 214-216 NN denotes kb
T16623 212-213 CD denotes 2
T16622 206-211 IN denotes about
T16621 195-205 VBG denotes containing
T16620 186-194 NN denotes fragment
T16619 180-185 NNP denotes EcoRI
T16618 173-179 JJ denotes 3.7-kb
T16617 171-172 DT denotes a
T16616 164-170 IN denotes within
T16615 156-163 VBN denotes located
T16614 152-155 VBP denotes are
T16613 142-151 VBG denotes silencing
T16612 137-141 NN denotes gene
T16611 135-136 NN denotes ɛ
T16610 131-134 IN denotes for
T16609 122-130 VBN denotes required
T16608 112-121 NNS denotes sequences
T16607 108-111 DT denotes all
T16606 103-107 IN denotes that
T16605 97-102 VBN denotes shown
T16604 92-96 VBN denotes been
T16603 88-91 VBZ denotes has
T16602 85-87 PRP denotes it
T16601 77-84 IN denotes because
T16600 75-76 , denotes ,
T16599 71-75 VBN denotes used
T16598 67-70 VBD denotes was
T16597 65-66 -RRB- denotes )
T16596 62-65 NNP denotes ATG
T16595 61-62 -LRB- denotes (
T16594 55-60 NN denotes codon
T16593 44-54 NN denotes initiation
T16592 37-43 NN denotes globin
T16591 34-36 JJ denotes ɛy
T16590 30-33 DT denotes the
T16589 27-29 IN denotes of
T16588 18-26 RB denotes upstream
T16587 9-17 NN denotes fragment
T16586 2-8 JJ denotes 2.2-kb
T16585 0-1 DT denotes A
T16638 272-273 . denotes .
T16637 271-272 NNP denotes ]
T16636 269-271 CD denotes 50
R11501 T16585 T16587 det A,fragment
R11502 T16586 T16587 compound 2.2-kb,fragment
R11503 T16587 T16588 compound fragment,upstream
R11504 T16588 T16599 nsubjpass upstream,used
R11505 T16589 T16588 prep of,upstream
R11506 T16590 T16593 det the,initiation
R11507 T16591 T16593 amod ɛy,initiation
R11508 T16592 T16593 compound globin,initiation
R11509 T16593 T16594 compound initiation,codon
R11510 T16594 T16589 pobj codon,of
R11511 T16595 T16596 punct (,ATG
R11512 T16596 T16594 appos ATG,codon
R11513 T16597 T16594 punct ),codon
R11514 T16598 T16599 auxpass was,used
R11515 T16599 T16599 ROOT used,used
R11516 T16600 T16599 punct ",",used
R11517 T16601 T16605 mark because,shown
R11518 T16602 T16605 nsubjpass it,shown
R11519 T16603 T16605 aux has,shown
R11520 T16604 T16605 auxpass been,shown
R11521 T16605 T16599 advcl shown,used
R11522 T16606 T16615 mark that,located
R11523 T16607 T16608 det all,sequences
R11524 T16608 T16615 nsubjpass sequences,located
R11525 T16609 T16608 acl required,sequences
R11526 T16610 T16609 prep for,required
R11527 T16611 T16612 compound ɛ,gene
R11528 T16612 T16610 pobj gene,for
R11529 T16613 T16612 acl silencing,gene
R11530 T16614 T16615 auxpass are,located
R11531 T16615 T16605 ccomp located,shown
R11532 T16616 T16615 prep within,located
R11533 T16617 T16620 det a,fragment
R11534 T16618 T16620 compound 3.7-kb,fragment
R11535 T16619 T16620 compound EcoRI,fragment
R11536 T16620 T16616 pobj fragment,within
R11537 T16621 T16620 acl containing,fragment
R11538 T16622 T16624 quantmod about,kb
R11539 T16623 T16624 nummod 2,kb
R11540 T16624 T16621 dobj kb,containing
R11541 T16625 T16624 prep of,kb
R11542 T16626 T16625 pobj sequence,of
R11543 T16627 T16621 advmod upstream,containing
R11544 T16628 T16627 prep of,upstream
R11545 T16629 T16634 det the,site
R11546 T16630 T16634 nmod ɛ,site
R11547 T16631 T16634 compound globin,site
R11548 T16632 T16633 compound gene,cap
R11549 T16633 T16634 compound cap,site
R11550 T16634 T16628 pobj site,of
R11551 T16635 T16634 appos [,site
R11552 T16636 T16637 nummod 50,]
R11553 T16637 T16634 appos ],site
R11554 T16638 T16599 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16492 245-258 Protein denotes ɛ globin gene
T16491 180-185 Protein denotes EcoRI
T16490 34-43 Protein denotes ɛy globin

testone

Id Subject Object Predicate Lexical cue
T15958 142-151 Negative_regulation denotes silencing
T15946 245-253 Protein denotes ɛ globin
T15945 135-136 Protein denotes ɛ
T15944 34-43 Protein denotes ɛy globin
R11066 T15945 T15958 themeOf ɛ,silencing

test3

Id Subject Object Predicate Lexical cue
T15981 245-253 Protein denotes ɛ globin
T15980 135-136 Protein denotes ɛ
T15979 34-43 Protein denotes ɛy globin
T15965 245-253 Protein denotes ɛ globin
T15964 135-136 Protein denotes ɛ
T15963 34-43 Protein denotes ɛy globin