PMC:1359074 / 33791-34064
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
16462943-1737096-85761022 | 269-271 | 1737096 | denotes | 50 |
T43787 | 269-271 | 1737096 | denotes | 50 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16146 | 271-272 | -RRB- | denotes | ] |
T16145 | 269-271 | CD | denotes | 50 |
T16144 | 268-269 | -LRB- | denotes | [ |
T16143 | 263-267 | NN | denotes | site |
T16142 | 259-262 | NN | denotes | cap |
T16141 | 254-258 | NN | denotes | gene |
T16140 | 247-253 | NN | denotes | globin |
T16139 | 245-246 | NN | denotes | ɛ |
T16138 | 241-244 | DT | denotes | the |
T16137 | 238-240 | IN | denotes | of |
T16136 | 229-237 | RB | denotes | upstream |
T16135 | 220-228 | NN | denotes | sequence |
T16134 | 217-219 | IN | denotes | of |
T16133 | 214-216 | NN | denotes | kb |
T16132 | 212-213 | CD | denotes | 2 |
T16131 | 206-211 | IN | denotes | about |
T16130 | 195-205 | VB | denotes | containing |
T16129 | 186-194 | NN | denotes | fragment |
T16128 | 180-185 | NN | denotes | EcoRI |
T16127 | 173-179 | JJ | denotes | 3.7-kb |
T16126 | 171-172 | DT | denotes | a |
T16125 | 164-170 | IN | denotes | within |
T16124 | 156-163 | JJ | denotes | located |
T16123 | 152-155 | VB | denotes | are |
T16122 | 142-151 | NN | denotes | silencing |
T16121 | 137-141 | NN | denotes | gene |
T16120 | 135-136 | NN | denotes | ɛ |
T16119 | 131-134 | IN | denotes | for |
T16118 | 122-130 | VB | denotes | required |
T16117 | 112-121 | NN | denotes | sequences |
T16116 | 108-111 | DT | denotes | all |
T16115 | 103-107 | IN | denotes | that |
T16114 | 97-102 | VB | denotes | shown |
T16113 | 92-96 | VB | denotes | been |
T16112 | 88-91 | VB | denotes | has |
T16111 | 85-87 | PRP | denotes | it |
T16110 | 77-84 | IN | denotes | because |
T16109 | 75-76 | -COMMA- | denotes | , |
T16108 | 71-75 | VB | denotes | used |
T16107 | 67-70 | VB | denotes | was |
T16106 | 65-66 | -RRB- | denotes | ) |
T16105 | 62-65 | NN | denotes | ATG |
T16104 | 61-62 | -LRB- | denotes | ( |
T16103 | 55-60 | NN | denotes | codon |
T16102 | 44-54 | NN | denotes | initiation |
T16101 | 37-43 | NN | denotes | globin |
T16100 | 34-36 | JJ | denotes | ɛy |
T16099 | 30-33 | DT | denotes | the |
T16098 | 27-29 | IN | denotes | of |
T16097 | 18-26 | RB | denotes | upstream |
T16096 | 9-17 | NN | denotes | fragment |
T16095 | 2-8 | JJ | denotes | 2.2-kb |
T16094 | 0-1 | DT | denotes | A |
R11101 | T16096 | T16094 | arg1Of | fragment,A |
R11102 | T16096 | T16095 | arg1Of | fragment,2.2-kb |
R11103 | T16096 | T16097 | arg1Of | fragment,upstream |
R11104 | T16096 | T16107 | arg1Of | fragment,was |
R11105 | T16096 | T16108 | arg2Of | fragment,used |
R11106 | T16097 | T16098 | arg1Of | upstream,of |
R11107 | T16103 | T16098 | arg2Of | codon,of |
R11108 | T16103 | T16099 | arg1Of | codon,the |
R11109 | T16103 | T16100 | arg1Of | codon,ɛy |
R11110 | T16103 | T16101 | arg1Of | codon,globin |
R11111 | T16103 | T16102 | arg1Of | codon,initiation |
R11112 | T16103 | T16104 | arg1Of | codon,( |
R11113 | T16105 | T16104 | arg2Of | ATG,( |
R11114 | T16106 | T16104 | arg3Of | ),( |
R11115 | T16108 | T16107 | arg2Of | used,was |
R11116 | T16108 | T16109 | arg1Of | used,"," |
R11117 | T16108 | T16110 | arg1Of | used,because |
R11118 | T16111 | T16112 | arg1Of | it,has |
R11119 | T16111 | T16113 | arg1Of | it,been |
R11120 | T16111 | T16114 | arg2Of | it,shown |
R11121 | T16114 | T16110 | arg2Of | shown,because |
R11122 | T16114 | T16112 | arg2Of | shown,has |
R11123 | T16114 | T16113 | arg2Of | shown,been |
R11124 | T16117 | T16116 | arg1Of | sequences,all |
R11125 | T16117 | T16118 | arg2Of | sequences,required |
R11126 | T16117 | T16123 | arg1Of | sequences,are |
R11127 | T16117 | T16124 | arg1Of | sequences,located |
R11128 | T16118 | T16119 | arg1Of | required,for |
R11129 | T16122 | T16119 | arg2Of | silencing,for |
R11130 | T16122 | T16120 | arg1Of | silencing,ɛ |
R11131 | T16122 | T16121 | arg1Of | silencing,gene |
R11132 | T16123 | T16114 | arg3Of | are,shown |
R11133 | T16123 | T16115 | arg1Of | are,that |
R11134 | T16124 | T16123 | arg2Of | located,are |
R11135 | T16124 | T16125 | arg1Of | located,within |
R11136 | T16129 | T16125 | arg2Of | fragment,within |
R11137 | T16129 | T16126 | arg1Of | fragment,a |
R11138 | T16129 | T16127 | arg1Of | fragment,3.7-kb |
R11139 | T16129 | T16128 | arg1Of | fragment,EcoRI |
R11140 | T16129 | T16130 | arg1Of | fragment,containing |
R11141 | T16130 | T16144 | arg1Of | containing,[ |
R11142 | T16132 | T16131 | arg1Of | 2,about |
R11143 | T16133 | T16130 | arg2Of | kb,containing |
R11144 | T16133 | T16132 | arg1Of | kb,2 |
R11145 | T16133 | T16134 | arg1Of | kb,of |
R11146 | T16133 | T16136 | arg1Of | kb,upstream |
R11147 | T16135 | T16134 | arg2Of | sequence,of |
R11148 | T16136 | T16137 | arg1Of | upstream,of |
R11149 | T16143 | T16137 | arg2Of | site,of |
R11150 | T16143 | T16138 | arg1Of | site,the |
R11151 | T16143 | T16139 | arg1Of | site,ɛ |
R11152 | T16143 | T16140 | arg1Of | site,globin |
R11153 | T16143 | T16141 | arg1Of | site,gene |
R11154 | T16143 | T16142 | arg1Of | site,cap |
R11155 | T16145 | T16144 | arg2Of | 50,[ |
R11156 | T16146 | T16144 | arg3Of | ],[ |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16042 | 245-253 | Protein | denotes | ɛ globin |
T16041 | 135-136 | Protein | denotes | ɛ |
T16040 | 34-43 | Protein | denotes | ɛy globin |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16011 | 137-151 | http://purl.obolibrary.org/obo/GO_0016458 | denotes | gene silencing |
T16010 | 247-253 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
T16009 | 37-43 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16055 | 247-253 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
T16054 | 37-43 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15997 | 0-273 | Sentence | denotes | A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50]. |
T253 | 0-273 | Sentence | denotes | A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50]. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16061 | 245-253 | Protein | denotes | ɛ globin |
T16060 | 135-136 | Protein | denotes | ɛ |
T16059 | 34-43 | Protein | denotes | ɛy globin |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17092 | 142-151 | Negative_regulation | denotes | silencing |
T17080 | 245-253 | Protein | denotes | ɛ globin |
T17079 | 135-136 | Protein | denotes | ɛ |
T17078 | 34-43 | Protein | denotes | ɛy globin |
R11932 | T17079 | T17092 | themeOf | ɛ,silencing |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16455 | 245-253 | Protein | denotes | ɛ globin |
T16454 | 135-136 | Protein | denotes | ɛ |
T16453 | 34-43 | Protein | denotes | ɛy globin |
T16469 | 122-130 | Positive_regulation | denotes | required |
T16468 | 142-151 | Negative_regulation | denotes | silencing |
R11456 | T16454 | T16468 | themeOf | ɛ,silencing |
R11460 | T16468 | T16469 | themeOf | silencing,required |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16539 | 122-130 | Positive_regulation | denotes | required |
T16538 | 142-151 | Negative_regulation | denotes | silencing |
T16525 | 245-253 | Protein | denotes | ɛ globin |
T16524 | 135-136 | Protein | denotes | ɛ |
T16523 | 34-43 | Protein | denotes | ɛy globin |
R11470 | T16524 | T16538 | themeOf | ɛ,silencing |
R11474 | T16538 | T16539 | themeOf | silencing,required |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17051 | 263-272 | Entity | denotes | site [50] |
T17050 | 37-43 | Protein | denotes | globin |
T17048 | 247-253 | Protein | denotes | globin |
T17033 | 241-262 | Protein | denotes | the ɛ globin gene cap |
T17032 | 171-216 | Entity | denotes | a 3.7-kb EcoRI fragment containing about 2 kb |
T17071 | 30-66 | Positive_regulation | denotes | the ɛy globin initiation codon (ATG) |
T17064 | 135-151 | Protein | denotes | ɛ gene silencing |
T17063 | 245-246 | Protein | denotes | ɛ |
T17057 | 34-36 | Protein | denotes | ɛy |
R11928 | T17050 | T17071 | themeOf | globin,the ɛy globin initiation codon (ATG) |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16635 | 268-269 | NNP | denotes | [ |
T16634 | 263-267 | NN | denotes | site |
T16633 | 259-262 | NN | denotes | cap |
T16632 | 254-258 | NN | denotes | gene |
T16631 | 247-253 | NN | denotes | globin |
T16630 | 245-246 | NN | denotes | ɛ |
T16629 | 241-244 | DT | denotes | the |
T16628 | 238-240 | IN | denotes | of |
T16627 | 229-237 | RB | denotes | upstream |
T16626 | 220-228 | NN | denotes | sequence |
T16625 | 217-219 | IN | denotes | of |
T16624 | 214-216 | NN | denotes | kb |
T16623 | 212-213 | CD | denotes | 2 |
T16622 | 206-211 | IN | denotes | about |
T16621 | 195-205 | VBG | denotes | containing |
T16620 | 186-194 | NN | denotes | fragment |
T16619 | 180-185 | NNP | denotes | EcoRI |
T16618 | 173-179 | JJ | denotes | 3.7-kb |
T16617 | 171-172 | DT | denotes | a |
T16616 | 164-170 | IN | denotes | within |
T16615 | 156-163 | VBN | denotes | located |
T16614 | 152-155 | VBP | denotes | are |
T16613 | 142-151 | VBG | denotes | silencing |
T16612 | 137-141 | NN | denotes | gene |
T16611 | 135-136 | NN | denotes | ɛ |
T16610 | 131-134 | IN | denotes | for |
T16609 | 122-130 | VBN | denotes | required |
T16608 | 112-121 | NNS | denotes | sequences |
T16607 | 108-111 | DT | denotes | all |
T16606 | 103-107 | IN | denotes | that |
T16605 | 97-102 | VBN | denotes | shown |
T16604 | 92-96 | VBN | denotes | been |
T16603 | 88-91 | VBZ | denotes | has |
T16602 | 85-87 | PRP | denotes | it |
T16601 | 77-84 | IN | denotes | because |
T16600 | 75-76 | , | denotes | , |
T16599 | 71-75 | VBN | denotes | used |
T16598 | 67-70 | VBD | denotes | was |
T16597 | 65-66 | -RRB- | denotes | ) |
T16596 | 62-65 | NNP | denotes | ATG |
T16595 | 61-62 | -LRB- | denotes | ( |
T16594 | 55-60 | NN | denotes | codon |
T16593 | 44-54 | NN | denotes | initiation |
T16592 | 37-43 | NN | denotes | globin |
T16591 | 34-36 | JJ | denotes | ɛy |
T16590 | 30-33 | DT | denotes | the |
T16589 | 27-29 | IN | denotes | of |
T16588 | 18-26 | RB | denotes | upstream |
T16587 | 9-17 | NN | denotes | fragment |
T16586 | 2-8 | JJ | denotes | 2.2-kb |
T16585 | 0-1 | DT | denotes | A |
T16638 | 272-273 | . | denotes | . |
T16637 | 271-272 | NNP | denotes | ] |
T16636 | 269-271 | CD | denotes | 50 |
R11501 | T16585 | T16587 | det | A,fragment |
R11502 | T16586 | T16587 | compound | 2.2-kb,fragment |
R11503 | T16587 | T16588 | compound | fragment,upstream |
R11504 | T16588 | T16599 | nsubjpass | upstream,used |
R11505 | T16589 | T16588 | prep | of,upstream |
R11506 | T16590 | T16593 | det | the,initiation |
R11507 | T16591 | T16593 | amod | ɛy,initiation |
R11508 | T16592 | T16593 | compound | globin,initiation |
R11509 | T16593 | T16594 | compound | initiation,codon |
R11510 | T16594 | T16589 | pobj | codon,of |
R11511 | T16595 | T16596 | punct | (,ATG |
R11512 | T16596 | T16594 | appos | ATG,codon |
R11513 | T16597 | T16594 | punct | ),codon |
R11514 | T16598 | T16599 | auxpass | was,used |
R11515 | T16599 | T16599 | ROOT | used,used |
R11516 | T16600 | T16599 | punct | ",",used |
R11517 | T16601 | T16605 | mark | because,shown |
R11518 | T16602 | T16605 | nsubjpass | it,shown |
R11519 | T16603 | T16605 | aux | has,shown |
R11520 | T16604 | T16605 | auxpass | been,shown |
R11521 | T16605 | T16599 | advcl | shown,used |
R11522 | T16606 | T16615 | mark | that,located |
R11523 | T16607 | T16608 | det | all,sequences |
R11524 | T16608 | T16615 | nsubjpass | sequences,located |
R11525 | T16609 | T16608 | acl | required,sequences |
R11526 | T16610 | T16609 | prep | for,required |
R11527 | T16611 | T16612 | compound | ɛ,gene |
R11528 | T16612 | T16610 | pobj | gene,for |
R11529 | T16613 | T16612 | acl | silencing,gene |
R11530 | T16614 | T16615 | auxpass | are,located |
R11531 | T16615 | T16605 | ccomp | located,shown |
R11532 | T16616 | T16615 | prep | within,located |
R11533 | T16617 | T16620 | det | a,fragment |
R11534 | T16618 | T16620 | compound | 3.7-kb,fragment |
R11535 | T16619 | T16620 | compound | EcoRI,fragment |
R11536 | T16620 | T16616 | pobj | fragment,within |
R11537 | T16621 | T16620 | acl | containing,fragment |
R11538 | T16622 | T16624 | quantmod | about,kb |
R11539 | T16623 | T16624 | nummod | 2,kb |
R11540 | T16624 | T16621 | dobj | kb,containing |
R11541 | T16625 | T16624 | prep | of,kb |
R11542 | T16626 | T16625 | pobj | sequence,of |
R11543 | T16627 | T16621 | advmod | upstream,containing |
R11544 | T16628 | T16627 | prep | of,upstream |
R11545 | T16629 | T16634 | det | the,site |
R11546 | T16630 | T16634 | nmod | ɛ,site |
R11547 | T16631 | T16634 | compound | globin,site |
R11548 | T16632 | T16633 | compound | gene,cap |
R11549 | T16633 | T16634 | compound | cap,site |
R11550 | T16634 | T16628 | pobj | site,of |
R11551 | T16635 | T16634 | appos | [,site |
R11552 | T16636 | T16637 | nummod | 50,] |
R11553 | T16637 | T16634 | appos | ],site |
R11554 | T16638 | T16599 | punct | .,used |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16492 | 245-258 | Protein | denotes | ɛ globin gene |
T16491 | 180-185 | Protein | denotes | EcoRI |
T16490 | 34-43 | Protein | denotes | ɛy globin |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15958 | 142-151 | Negative_regulation | denotes | silencing |
T15946 | 245-253 | Protein | denotes | ɛ globin |
T15945 | 135-136 | Protein | denotes | ɛ |
T15944 | 34-43 | Protein | denotes | ɛy globin |
R11066 | T15945 | T15958 | themeOf | ɛ,silencing |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15981 | 245-253 | Protein | denotes | ɛ globin |
T15980 | 135-136 | Protein | denotes | ɛ |
T15979 | 34-43 | Protein | denotes | ɛy globin |
T15965 | 245-253 | Protein | denotes | ɛ globin |
T15964 | 135-136 | Protein | denotes | ɛ |
T15963 | 34-43 | Protein | denotes | ɛy globin |