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PMC:1359074 / 3112-3333 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-1425584-85760952 95-96 1425584 denotes 2
16462943-8078769-85760953 97-98 8078769 denotes 3
16462943-8404853-85760954 172-173 8404853 denotes 4
T92399 95-96 1425584 denotes 2
T83652 97-98 8078769 denotes 3
T27842 172-173 8404853 denotes 4

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1782 187-190 NN denotes Sox
T1781 185-186 -COMMA- denotes ,
T1780 176-185 RB denotes Therefore
T1779 173-174 -RRB- denotes ]
T1778 172-173 CD denotes 4
T1777 171-172 -LRB- denotes [
T1776 167-170 NN denotes DNA
T1775 164-166 IN denotes of
T1774 157-163 NN denotes groove
T1773 151-156 JJ denotes major
T1772 147-150 DT denotes the
T1771 140-146 VB denotes target
T1770 132-139 NN denotes factors
T1769 118-131 NN denotes transcription
T1768 112-117 JJ denotes other
T1767 107-111 JJ denotes most
T1766 101-106 IN denotes while
T1765 99-100 -COMMA- denotes ,
T1764 98-99 -RRB- denotes ]
T1763 95-98 CD denotes 2,3
T1762 94-95 -LRB- denotes [
T1761 86-93 NN denotes changes
T1760 71-85 JJ denotes conformational
T1759 65-70 JJ denotes local
T1758 62-64 TO denotes to
T1757 56-61 VB denotes leads
T1756 51-55 WDT denotes that
T1755 47-50 NN denotes DNA
T1754 43-46 DT denotes the
T1753 40-42 IN denotes of
T1752 35-39 NN denotes bend
T1751 27-34 JJ denotes 70°–85°
T1750 25-26 DT denotes a
T1749 19-24 VB denotes cause
T1748 15-18 CC denotes and
T1747 11-14 NN denotes DNA
T1746 8-10 IN denotes of
T1745 1-7 NN denotes groove
T1787 217-219 IN denotes of
T1786 212-216 NN denotes part
T1784 200-203 MD denotes may
T1783 191-199 NN denotes proteins
T1785 204-211 VB denotes perform
R853 T1745 T1746 arg1Of groove,of
R854 T1747 T1746 arg2Of DNA,of
R855 T1749 T1748 arg2Of cause,and
R856 T1752 T1749 arg2Of bend,cause
R857 T1752 T1750 arg1Of bend,a
R858 T1752 T1751 arg1Of bend,70°–85°
R859 T1752 T1753 arg1Of bend,of
R860 T1755 T1753 arg2Of DNA,of
R861 T1755 T1754 arg1Of DNA,the
R862 T1755 T1756 arg1Of DNA,that
R863 T1755 T1757 arg1Of DNA,leads
R864 T1757 T1758 arg1Of leads,to
R865 T1757 T1765 arg1Of leads,","
R866 T1757 T1766 arg1Of leads,while
R867 T1761 T1758 arg2Of changes,to
R868 T1761 T1759 arg1Of changes,local
R869 T1761 T1760 arg1Of changes,conformational
R870 T1761 T1762 arg1Of changes,[
R871 T1763 T1762 arg2Of "2,3",[
R872 T1764 T1762 arg3Of ],[
R873 T1770 T1767 arg1Of factors,most
R874 T1770 T1768 arg1Of factors,other
R875 T1770 T1769 arg1Of factors,transcription
R876 T1770 T1771 arg1Of factors,target
R877 T1771 T1766 arg2Of target,while
R878 T1771 T1777 arg1Of target,[
R879 T1774 T1771 arg2Of groove,target
R880 T1774 T1772 arg1Of groove,the
R881 T1774 T1773 arg1Of groove,major
R882 T1774 T1775 arg1Of groove,of
R883 T1776 T1775 arg2Of DNA,of
R884 T1778 T1777 arg2Of 4,[
R885 T1779 T1777 arg3Of ],[
R886 T1783 T1782 arg1Of proteins,Sox
R887 T1783 T1784 arg1Of proteins,may
R888 T1783 T1785 arg1Of proteins,perform
R890 T1785 T1780 arg1Of perform,Therefore
R891 T1785 T1781 arg1Of perform,","
R892 T1785 T1784 arg2Of perform,may
R895 T1786 T1785 arg2Of part,perform
R896 T1786 T1787 arg1Of part,of

GO-BP

Id Subject Object Predicate Lexical cue
T1237 118-131 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T1487 157-163 http://purl.obolibrary.org/obo/GO_0097610 denotes groove
T1486 1-7 http://purl.obolibrary.org/obo/GO_0097610 denotes groove

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4103 11-14 Entity denotes DNA
T4079 187-199 Protein denotes Sox proteins
T4059 167-170 Entity denotes DNA
T4038 187-190 Protein denotes Sox
T4191 147-174 Entity denotes the major groove of DNA [4]
T4172 40-50 Entity denotes of the DNA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2967 19-24 VB denotes cause
T2966 15-18 CC denotes and
T2965 11-14 NNP denotes DNA
T2964 8-10 IN denotes of
T2963 1-7 NN denotes groove
T3009 217-219 IN denotes of
T3008 212-216 NN denotes part
T3007 204-211 VB denotes perform
T3006 200-203 MD denotes may
T3005 191-199 NNS denotes proteins
T3004 187-190 NNP denotes Sox
T3003 185-186 , denotes ,
T3002 176-185 RB denotes Therefore
T3001 174-175 . denotes .
T3000 173-174 NNP denotes ]
T2999 172-173 CD denotes 4
T2998 171-172 NNP denotes [
T2997 167-170 NNP denotes DNA
T2996 164-166 IN denotes of
T2995 157-163 NN denotes groove
T2994 151-156 JJ denotes major
T2993 147-150 DT denotes the
T2992 140-146 VBP denotes target
T2991 132-139 NNS denotes factors
T2990 118-131 NN denotes transcription
T2989 112-117 JJ denotes other
T2988 107-111 RBS denotes most
T2987 101-106 IN denotes while
T2986 99-100 , denotes ,
T2985 98-99 NNP denotes ]
T2984 95-98 CD denotes 2,3
T2983 94-95 NNP denotes [
T2982 86-93 NNS denotes changes
T2981 71-85 JJ denotes conformational
T2980 65-70 JJ denotes local
T2979 62-64 TO denotes to
T2978 56-61 VBZ denotes leads
T2977 51-55 WDT denotes that
T2976 47-50 NN denotes DNA
T2975 43-46 DT denotes the
T2974 40-42 IN denotes of
T2973 35-39 VB denotes bend
T2972 33-34 NN denotes °
T2971 31-33 CD denotes 85
T2970 29-30 NN denotes °
T2969 27-29 CD denotes 70
T2968 25-26 DT denotes a
R1979 T2964 T2963 prep of,groove
R1980 T2965 T2964 pobj DNA,of
R1983 T2968 T2970 det a,°
R1985 T2969 T2970 nummod 70,°
R1986 T2970 T2967 dobj °,cause
R1987 T2971 T2973 nummod 85,bend
R1989 T2972 T2973 compound °,bend
R1990 T2973 T2970 appos bend,°
R1991 T2974 T2973 prep of,bend
R1993 T2975 T2976 det the,DNA
R1994 T2976 T2974 pobj DNA,of
R1995 T2977 T2978 nsubj that,leads
R1997 T2978 T2976 relcl leads,DNA
R1998 T2979 T2978 prep to,leads
R1999 T2980 T2982 amod local,changes
R2000 T2981 T2982 amod conformational,changes
R2002 T2982 T2979 pobj changes,to
R2003 T2983 T2985 compound [,]
R2005 T2984 T2985 compound "2,3",]
R2006 T2985 T2982 appos ],changes
R2007 T2986 T2973 punct ",",bend
R2009 T2987 T2992 mark while,target
R2010 T2988 T2991 amod most,factors
R2011 T2989 T2991 amod other,factors
R2013 T2990 T2991 compound transcription,factors
R2014 T2991 T2992 nsubj factors,target
R2015 T2992 T2973 advcl target,bend
R2016 T2993 T2995 det the,groove
R2017 T2994 T2995 amod major,groove
R2018 T2995 T2992 dobj groove,target
R2019 T2996 T2995 prep of,groove
R2020 T2997 T3000 compound DNA,]
R2022 T2998 T3000 nmod [,]
R2023 T2999 T3000 nummod 4,]
R2024 T3000 T2996 pobj ],of
R2027 T3002 T3007 advmod Therefore,perform
R2029 T3003 T3007 punct ",",perform
R2030 T3004 T3005 compound Sox,proteins
R2031 T3005 T3007 nsubj proteins,perform
R2033 T3006 T3007 aux may,perform
R2034 T3007 T3007 ROOT perform,perform
R2035 T3008 T3007 dobj part,perform
R2037 T3009 T3008 prep of,part

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1508 187-199 Protein denotes Sox proteins