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PMC:1359074 / 3069-3287 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-1425584-85760952 138-139 1425584 denotes 2
16462943-8078769-85760953 140-141 8078769 denotes 3
16462943-8404853-85760954 215-216 8404853 denotes 4
T92399 138-139 1425584 denotes 2
T83652 140-141 8078769 denotes 3
T27842 215-216 8404853 denotes 4

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1779 216-217 -RRB- denotes ]
T1778 215-216 CD denotes 4
T1777 214-215 -LRB- denotes [
T1776 210-213 NN denotes DNA
T1775 207-209 IN denotes of
T1774 200-206 NN denotes groove
T1773 194-199 JJ denotes major
T1772 190-193 DT denotes the
T1771 183-189 VB denotes target
T1770 175-182 NN denotes factors
T1769 161-174 NN denotes transcription
T1768 155-160 JJ denotes other
T1767 150-154 JJ denotes most
T1766 144-149 IN denotes while
T1765 142-143 -COMMA- denotes ,
T1764 141-142 -RRB- denotes ]
T1763 138-141 CD denotes 2,3
T1762 137-138 -LRB- denotes [
T1761 129-136 NN denotes changes
T1760 114-128 JJ denotes conformational
T1759 108-113 JJ denotes local
T1758 105-107 TO denotes to
T1757 99-104 VB denotes leads
T1756 94-98 WDT denotes that
T1755 90-93 NN denotes DNA
T1754 86-89 DT denotes the
T1753 83-85 IN denotes of
T1752 78-82 NN denotes bend
T1751 70-77 JJ denotes 70°–85°
T1750 68-69 DT denotes a
T1749 62-67 VB denotes cause
T1748 58-61 CC denotes and
T1747 54-57 NN denotes DNA
T1746 51-53 IN denotes of
T1745 44-50 NN denotes groove
T1744 38-43 JJ denotes minor
T1743 34-37 DT denotes the
T1742 31-33 TO denotes to
T1741 26-30 VB denotes bind
T1740 18-25 NN denotes factors
T1739 4-17 NN denotes transcription
T1738 0-3 NN denotes Sox
R844 T1740 T1738 arg1Of factors,Sox
R845 T1740 T1739 arg1Of factors,transcription
R846 T1740 T1741 arg1Of factors,bind
R847 T1740 T1749 arg1Of factors,cause
R848 T1741 T1742 arg1Of bind,to
R849 T1741 T1748 arg1Of bind,and
R850 T1745 T1742 arg2Of groove,to
R851 T1745 T1743 arg1Of groove,the
R852 T1745 T1744 arg1Of groove,minor
R853 T1745 T1746 arg1Of groove,of
R854 T1747 T1746 arg2Of DNA,of
R855 T1749 T1748 arg2Of cause,and
R856 T1752 T1749 arg2Of bend,cause
R857 T1752 T1750 arg1Of bend,a
R858 T1752 T1751 arg1Of bend,70°–85°
R859 T1752 T1753 arg1Of bend,of
R860 T1755 T1753 arg2Of DNA,of
R861 T1755 T1754 arg1Of DNA,the
R862 T1755 T1756 arg1Of DNA,that
R863 T1755 T1757 arg1Of DNA,leads
R864 T1757 T1758 arg1Of leads,to
R865 T1757 T1765 arg1Of leads,","
R866 T1757 T1766 arg1Of leads,while
R867 T1761 T1758 arg2Of changes,to
R868 T1761 T1759 arg1Of changes,local
R869 T1761 T1760 arg1Of changes,conformational
R870 T1761 T1762 arg1Of changes,[
R871 T1763 T1762 arg2Of "2,3",[
R872 T1764 T1762 arg3Of ],[
R873 T1770 T1767 arg1Of factors,most
R874 T1770 T1768 arg1Of factors,other
R875 T1770 T1769 arg1Of factors,transcription
R876 T1770 T1771 arg1Of factors,target
R877 T1771 T1766 arg2Of target,while
R878 T1771 T1777 arg1Of target,[
R879 T1774 T1771 arg2Of groove,target
R880 T1774 T1772 arg1Of groove,the
R881 T1774 T1773 arg1Of groove,major
R882 T1774 T1775 arg1Of groove,of
R883 T1776 T1775 arg2Of DNA,of
R884 T1778 T1777 arg2Of 4,[
R885 T1779 T1777 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T1237 161-174 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1236 4-17 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T1487 200-206 http://purl.obolibrary.org/obo/GO_0097610 denotes groove
T1486 44-50 http://purl.obolibrary.org/obo/GO_0097610 denotes groove

sentences

Id Subject Object Predicate Lexical cue
T1201 0-218 Sentence denotes Sox transcription factors bind to the minor groove of DNA and cause a 70°–85° bend of the DNA that leads to local conformational changes [2,3], while most other transcription factors target the major groove of DNA [4].
T21 0-218 Sentence denotes Sox transcription factors bind to the minor groove of DNA and cause a 70°–85° bend of the DNA that leads to local conformational changes [2,3], while most other transcription factors target the major groove of DNA [4].

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4103 54-57 Entity denotes DNA
T4060 0-3 Protein denotes Sox
T4059 210-213 Entity denotes DNA
T4209 0-57 Binding denotes Sox transcription factors bind to the minor groove of DNA
T4191 190-217 Entity denotes the major groove of DNA [4]
T4184 31-57 Entity denotes to the minor groove of DNA
T4144 0-25 Protein denotes Sox transcription factors
T4172 83-93 Entity denotes of the DNA
R3015 T4144 T4209 themeOf Sox transcription factors,Sox transcription factors bind to the minor groove of DNA
R3024 T4184 T4209 themeOf to the minor groove of DNA,Sox transcription factors bind to the minor groove of DNA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2967 62-67 VB denotes cause
T2966 58-61 CC denotes and
T2965 54-57 NNP denotes DNA
T2964 51-53 IN denotes of
T2963 44-50 NN denotes groove
T2962 38-43 JJ denotes minor
T2961 34-37 DT denotes the
T2960 31-33 TO denotes to
T2959 26-30 NN denotes bind
T2958 18-25 NNS denotes factors
T2957 4-17 NN denotes transcription
T2956 0-3 NNP denotes Sox
T3001 217-218 . denotes .
T3000 216-217 NNP denotes ]
T2999 215-216 CD denotes 4
T2998 214-215 NNP denotes [
T2997 210-213 NNP denotes DNA
T2996 207-209 IN denotes of
T2995 200-206 NN denotes groove
T2994 194-199 JJ denotes major
T2993 190-193 DT denotes the
T2992 183-189 VBP denotes target
T2991 175-182 NNS denotes factors
T2990 161-174 NN denotes transcription
T2989 155-160 JJ denotes other
T2988 150-154 RBS denotes most
T2987 144-149 IN denotes while
T2986 142-143 , denotes ,
T2985 141-142 NNP denotes ]
T2984 138-141 CD denotes 2,3
T2983 137-138 NNP denotes [
T2982 129-136 NNS denotes changes
T2981 114-128 JJ denotes conformational
T2980 108-113 JJ denotes local
T2979 105-107 TO denotes to
T2978 99-104 VBZ denotes leads
T2977 94-98 WDT denotes that
T2976 90-93 NN denotes DNA
T2975 86-89 DT denotes the
T2974 83-85 IN denotes of
T2973 78-82 VB denotes bend
T2972 76-77 NN denotes °
T2971 74-76 CD denotes 85
T2970 72-73 NN denotes °
T2969 70-72 CD denotes 70
T2968 68-69 DT denotes a
R1968 T2956 T2959 nsubj Sox,bind
R1969 T2957 T2958 compound transcription,factors
R1970 T2958 T2959 nsubj factors,bind
R1972 T2959 T2959 ROOT bind,bind
R1973 T2960 T2959 prep to,bind
R1975 T2961 T2963 det the,groove
R1976 T2962 T2963 amod minor,groove
R1978 T2963 T2960 pobj groove,to
R1979 T2964 T2963 prep of,groove
R1980 T2965 T2964 pobj DNA,of
R1981 T2966 T2959 cc and,bind
R1982 T2967 T2959 conj cause,bind
R1983 T2968 T2970 det a,°
R1985 T2969 T2970 nummod 70,°
R1986 T2970 T2967 dobj °,cause
R1987 T2971 T2973 nummod 85,bend
R1989 T2972 T2973 compound °,bend
R1990 T2973 T2970 appos bend,°
R1991 T2974 T2973 prep of,bend
R1993 T2975 T2976 det the,DNA
R1994 T2976 T2974 pobj DNA,of
R1995 T2977 T2978 nsubj that,leads
R1997 T2978 T2976 relcl leads,DNA
R1998 T2979 T2978 prep to,leads
R1999 T2980 T2982 amod local,changes
R2000 T2981 T2982 amod conformational,changes
R2002 T2982 T2979 pobj changes,to
R2003 T2983 T2985 compound [,]
R2005 T2984 T2985 compound "2,3",]
R2006 T2985 T2982 appos ],changes
R2007 T2986 T2973 punct ",",bend
R2009 T2987 T2992 mark while,target
R2010 T2988 T2991 amod most,factors
R2011 T2989 T2991 amod other,factors
R2013 T2990 T2991 compound transcription,factors
R2014 T2991 T2992 nsubj factors,target
R2015 T2992 T2973 advcl target,bend
R2016 T2993 T2995 det the,groove
R2017 T2994 T2995 amod major,groove
R2018 T2995 T2992 dobj groove,target
R2019 T2996 T2995 prep of,groove
R2020 T2997 T3000 compound DNA,]
R2022 T2998 T3000 nmod [,]
R2023 T2999 T3000 nummod 4,]
R2024 T3000 T2996 pobj ],of
R2026 T3001 T2959 punct .,bind

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1507 26-30 Binding denotes bind
T1506 0-3 Protein denotes Sox
R758 T1506 T1507 themeOf Sox,bind

testone

Id Subject Object Predicate Lexical cue
T1033 26-30 Binding denotes bind

test3

Id Subject Object Predicate Lexical cue
T1122 26-30 Binding denotes bind