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PMC:1359074 / 30560-30829 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12777 267-268 -RRB- denotes )
T12776 266-267 CD denotes 1
T12775 259-265 NN denotes Figure
T12774 258-259 -LRB- denotes (
T12773 254-257 NN denotes dpc
T12772 249-253 CD denotes 18.5
T12771 246-248 IN denotes at
T12770 238-245 VB denotes observe
T12769 235-237 PRP denotes we
T12768 230-234 WP denotes what
T12767 227-229 TO denotes to
T12766 219-226 JJ denotes similar
T12765 217-218 -COMMA- denotes ,
T12764 216-217 -RRB- denotes )
T12763 212-216 NN denotes data
T12762 200-211 JJ denotes unpublished
T12761 199-200 -LRB- denotes (
T12760 196-198 NN denotes WT
T12759 191-195 IN denotes with
T12758 182-190 VB denotes compared
T12757 178-181 NN denotes RNA
T12756 171-177 JJ denotes mutant
T12755 167-170 DT denotes the
T12754 164-166 IN denotes in
T12753 155-163 JJ denotes elevated
T12752 144-154 RB denotes moderately
T12751 139-143 VB denotes were
T12750 132-138 NN denotes levels
T12749 128-131 NN denotes RNA
T12748 121-127 NN denotes globin
T12747 114-120 JJ denotes β-like
T12746 108-113 JJ denotes adult
T12745 106-107 -COMMA- denotes ,
T12744 99-106 RB denotes however
T12743 97-98 -COLON- denotes ;
T12742 95-97 NN denotes WT
T12741 91-94 CC denotes and
T12740 84-90 JJ denotes mutant
T12739 81-83 IN denotes in
T12738 76-80 CC denotes both
T12737 63-75 JJ denotes undetectable
T12736 58-62 VB denotes were
T12735 54-57 NN denotes RNA
T12734 50-53 NN denotes βh1
T12733 46-49 CC denotes and
T12732 44-45 NN denotes ζ
T12731 41-43 IN denotes of
T12730 34-40 NN denotes levels
T12729 30-33 DT denotes the
T12728 28-29 -COMMA- denotes ,
T12727 17-28 NN denotes development
T12726 14-16 IN denotes in
T12725 8-13 NN denotes point
T12724 3-7 DT denotes this
T12723 0-2 IN denotes At
R8609 T12725 T12723 arg2Of point,At
R8610 T12725 T12724 arg1Of point,this
R8611 T12725 T12726 arg1Of point,in
R8612 T12727 T12726 arg2Of development,in
R8613 T12730 T12729 arg1Of levels,the
R8614 T12730 T12731 arg1Of levels,of
R8615 T12730 T12736 arg1Of levels,were
R8616 T12730 T12737 arg1Of levels,undetectable
R8617 T12732 T12733 arg1Of ζ,and
R8618 T12733 T12731 arg2Of and,of
R8619 T12735 T12733 arg2Of RNA,and
R8620 T12735 T12734 arg1Of RNA,βh1
R8621 T12736 T12723 arg1Of were,At
R8622 T12736 T12728 arg1Of were,","
R8623 T12736 T12743 arg1Of were,;
R8624 T12737 T12736 arg2Of undetectable,were
R8625 T12737 T12739 arg1Of undetectable,in
R8626 T12739 T12738 arg1Of in,both
R8627 T12740 T12741 arg1Of mutant,and
R8628 T12741 T12739 arg2Of and,in
R8629 T12742 T12741 arg2Of WT,and
R8630 T12750 T12746 arg1Of levels,adult
R8631 T12750 T12747 arg1Of levels,β-like
R8632 T12750 T12748 arg1Of levels,globin
R8633 T12750 T12749 arg1Of levels,RNA
R8634 T12750 T12751 arg1Of levels,were
R8635 T12750 T12753 arg1Of levels,elevated
R8636 T12751 T12743 arg2Of were,;
R8637 T12751 T12744 arg1Of were,however
R8638 T12751 T12745 arg1Of were,","
R8639 T12751 T12758 arg1Of were,compared
R8640 T12753 T12751 arg2Of elevated,were
R8641 T12753 T12752 arg1Of elevated,moderately
R8642 T12753 T12754 arg1Of elevated,in
R8643 T12757 T12754 arg2Of RNA,in
R8644 T12757 T12755 arg1Of RNA,the
R8645 T12757 T12756 arg1Of RNA,mutant
R8646 T12759 T12758 arg2Of with,compared
R8647 T12760 T12759 arg2Of WT,with
R8648 T12760 T12761 arg1Of WT,(
R8649 T12760 T12765 arg1Of WT,","
R8650 T12760 T12766 arg1Of WT,similar
R8651 T12763 T12761 arg2Of data,(
R8652 T12763 T12762 arg1Of data,unpublished
R8653 T12764 T12761 arg3Of ),(
R8654 T12766 T12767 arg1Of similar,to
R8655 T12768 T12767 arg2Of what,to
R8656 T12768 T12770 arg2Of what,observe
R8657 T12769 T12770 arg1Of we,observe
R8658 T12770 T12771 arg1Of observe,at
R8659 T12773 T12771 arg2Of dpc,at
R8660 T12773 T12772 arg1Of dpc,18.5
R8661 T12773 T12774 arg1Of dpc,(
R8662 T12775 T12774 arg2Of Figure,(
R8663 T12775 T12776 arg1Of Figure,1
R8664 T12777 T12774 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11532 114-127 Protein denotes β-like globin
T11531 50-53 Protein denotes βh1
T11530 44-45 Protein denotes ζ

GO-BP

Id Subject Object Predicate Lexical cue
T11245 17-28 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T11220 121-127 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T11570 121-127 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11183 0-269 Sentence denotes At this point in development, the levels of ζ and βh1 RNA were undetectable both in mutant and WT; however, adult β-like globin RNA levels were moderately elevated in the mutant RNA compared with WT (unpublished data), similar to what we observe at 18.5 dpc (Figure 1).
T232 0-269 Sentence denotes At this point in development, the levels of ζ and βh1 RNA were undetectable both in mutant and WT; however, adult β-like globin RNA levels were moderately elevated in the mutant RNA compared with WT (unpublished data), similar to what we observe at 18.5 dpc (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T11796 114-127 Protein denotes β-like globin
T11795 50-53 Protein denotes βh1
T11794 44-45 Protein denotes ζ

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15822 155-163 Positive_regulation denotes elevated
T15821 63-75 Gene_expression denotes undetectable
T15767 114-127 Protein denotes β-like globin
T15766 50-53 Protein denotes βh1
T15765 44-45 Protein denotes ζ
R11023 T15765 T15821 themeOf ζ,undetectable
R11024 T15767 T15822 themeOf β-like globin,elevated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13408 155-163 Positive_regulation denotes elevated
T13357 114-127 Protein denotes β-like globin
T13356 50-53 Protein denotes βh1
T13355 44-45 Protein denotes ζ
R9191 T13357 T13408 themeOf β-like globin,elevated

DLUT931

Id Subject Object Predicate Lexical cue
T13669 155-163 Positive_regulation denotes elevated
T13603 114-127 Protein denotes β-like globin
T13602 50-53 Protein denotes βh1
T13601 44-45 Protein denotes ζ
R9358 T13603 T13669 themeOf β-like globin,elevated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15600 108-138 Protein denotes adult β-like globin RNA levels
T15577 128-131 Protein denotes RNA
T15538 167-181 Protein denotes the mutant RNA
T15531 50-57 Protein denotes βh1 RNA
T15510 44-45 Protein denotes ζ
T15454 50-53 Protein denotes βh1
T15631 249-268 Entity denotes 18.5 dpc (Figure 1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14801 266-267 CD denotes 1
T14800 259-265 NN denotes Figure
T14799 258-259 -LRB- denotes (
T14798 254-257 NN denotes dpc
T14797 249-253 CD denotes 18.5
T14796 246-248 IN denotes at
T14795 238-245 VBP denotes observe
T14794 235-237 PRP denotes we
T14793 230-234 WP denotes what
T14792 227-229 TO denotes to
T14791 219-226 JJ denotes similar
T14790 217-218 , denotes ,
T14789 216-217 -RRB- denotes )
T14788 212-216 NNS denotes data
T14787 200-211 JJ denotes unpublished
T14786 199-200 -LRB- denotes (
T14785 196-198 NNP denotes WT
T14784 191-195 IN denotes with
T14783 182-190 VBN denotes compared
T14782 178-181 NNP denotes RNA
T14781 171-177 JJ denotes mutant
T14780 167-170 DT denotes the
T14779 164-166 IN denotes in
T14778 155-163 VBN denotes elevated
T14777 144-154 RB denotes moderately
T14776 139-143 VBD denotes were
T14775 132-138 NNS denotes levels
T14774 128-131 NNP denotes RNA
T14773 121-127 NN denotes globin
T14772 114-120 JJ denotes β-like
T14771 108-113 NN denotes adult
T14770 106-107 , denotes ,
T14769 99-106 RB denotes however
T14768 97-98 : denotes ;
T14767 95-97 NNP denotes WT
T14766 91-94 CC denotes and
T14765 84-90 JJ denotes mutant
T14764 81-83 IN denotes in
T14763 76-80 DT denotes both
T14762 63-75 JJ denotes undetectable
T14761 58-62 VBD denotes were
T14760 54-57 NNP denotes RNA
T14759 50-53 CD denotes βh1
T14758 46-49 CC denotes and
T14757 44-45 NN denotes ζ
T14756 41-43 IN denotes of
T14755 34-40 NNS denotes levels
T14754 30-33 DT denotes the
T14753 28-29 , denotes ,
T14752 17-28 NN denotes development
T14751 14-16 IN denotes in
T14750 8-13 NN denotes point
T14749 3-7 DT denotes this
T14748 0-2 IN denotes At
T14803 268-269 . denotes .
T14802 267-268 -RRB- denotes )
R10274 T14754 T14755 det the,levels
R10276 T14755 T14761 nsubj levels,were
R10277 T14756 T14755 prep of,levels
R10278 T14757 T14756 pobj ζ,of
R10280 T14758 T14757 cc and,ζ
R10281 T14759 T14760 nummod βh1,RNA
R10282 T14760 T14757 conj RNA,ζ
R10284 T14761 T14778 ccomp were,elevated
R10285 T14762 T14761 acomp undetectable,were
R10287 T14763 T14764 advmod both,in
R10288 T14764 T14762 prep in,undetectable
R10290 T14765 T14764 pobj mutant,in
R10291 T14766 T14765 cc and,mutant
R10292 T14767 T14765 conj WT,mutant
R10294 T14768 T14778 punct ;,elevated
R10295 T14769 T14778 advmod however,elevated
R10296 T14770 T14778 punct ",",elevated
R10298 T14771 T14775 nmod adult,levels
R10299 T14772 T14775 amod β-like,levels
R10300 T14773 T14775 compound globin,levels
R10302 T14774 T14775 compound RNA,levels
R10303 T14775 T14776 nsubj levels,were
R10306 T14776 T14778 auxpass were,elevated
R10308 T14777 T14778 advmod moderately,elevated
R10309 T14778 T14778 ROOT elevated,elevated
R10310 T14779 T14778 prep in,elevated
R10312 T14780 T14782 det the,RNA
R10313 T14781 T14782 amod mutant,RNA
R10314 T14782 T14779 pobj RNA,in
R10315 T14783 T14778 prep compared,elevated
R10316 T14784 T14783 prep with,compared
R10318 T14785 T14784 pobj WT,with
R10319 T14786 T14785 punct (,WT
R10321 T14787 T14788 amod unpublished,data
R10322 T14788 T14785 appos data,WT
R10323 T14789 T14785 punct ),WT
R10325 T14790 T14785 punct ",",WT
R10326 T14791 T14778 conj similar,elevated
R10328 T14792 T14791 prep to,similar
R10329 T14793 T14795 dobj what,observe
R10330 T14794 T14795 nsubj we,observe
R10332 T14795 T14792 pcomp observe,to
R10333 T14796 T14795 prep at,observe
R10334 T14797 T14798 nummod 18.5,dpc
R10336 T14798 T14796 pobj dpc,at
R10337 T14799 T14800 punct (,Figure
R10338 T14800 T14792 pobj Figure,to
R10340 T14801 T14800 nummod 1,Figure
R10341 T14802 T14800 punct ),Figure
R10342 T14803 T14778 punct .,elevated
R10546 T14748 T14761 prep At,were
R10547 T14749 T14750 det this,point
R10549 T14750 T14748 pobj point,At
R10552 T14751 T14750 prep in,point
R10554 T14752 T14751 pobj development,in
R10555 T14753 T14761 punct ",",were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13494 155-163 Positive_regulation denotes elevated
T13493 63-75 Positive_regulation denotes undetectable
T13492 121-131 Protein denotes globin RNA
T13491 44-57 Protein denotes ζ and βh1 RNA
R9252 T13491 T13493 themeOf ζ and βh1 RNA,undetectable
R9253 T13492 T13494 themeOf globin RNA,elevated

testone

Id Subject Object Predicate Lexical cue
T10849 114-127 Protein denotes β-like globin
T10848 50-53 Protein denotes βh1
T10847 44-45 Protein denotes ζ
T10912 155-163 Positive_regulation denotes elevated
R7472 T10849 T10912 themeOf β-like globin,elevated

test3

Id Subject Object Predicate Lexical cue
T11119 155-163 Positive_regulation denotes elevated
T11118 114-127 Protein denotes β-like globin
T11117 50-53 Protein denotes βh1
T11116 44-45 Protein denotes ζ
T10994 114-127 Protein denotes β-like globin
T10993 50-53 Protein denotes βh1
T10992 44-45 Protein denotes ζ