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PMC:1359074 / 30176-31083 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-10760285-85761009 148-150 10760285 denotes 14
T23878 148-150 10760285 denotes 14

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12816 896-906 VB denotes elucidated
T12815 893-895 VB denotes be
T12814 890-892 TO denotes to
T12813 882-889 VB denotes remains
T12812 876-881 NN denotes genes
T12811 869-875 NN denotes globin
T12810 859-868 JJ denotes embryonic
T12809 853-858 JJ denotes other
T12808 849-852 DT denotes the
T12807 839-848 VB denotes regulates
T12806 834-838 NN denotes Sox6
T12805 828-833 WDT denotes which
T12804 825-827 IN denotes by
T12803 815-824 NN denotes mechanism
T12802 811-814 DT denotes The
T12801 800-809 NN denotes ɛy-globin
T12800 797-799 IN denotes of
T12799 786-796 NN denotes regulation
T12798 782-785 DT denotes the
T12797 779-781 IN denotes in
T12796 770-778 NN denotes function
T12795 763-769 JJ denotes unique
T12794 761-762 DT denotes a
T12793 757-760 VB denotes has
T12792 753-756 CC denotes and
T12791 742-752 NN denotes expression
T12790 735-741 NN denotes globin
T12789 732-734 JJ denotes ɛy
T12788 724-731 NN denotes silence
T12787 721-723 TO denotes to
T12786 709-720 RB denotes postnatally
T12785 700-708 VB denotes function
T12784 697-699 TO denotes to
T12783 687-696 VB denotes continues
T12782 682-686 NN denotes Sox6
T12781 677-681 IN denotes that
T12780 669-676 VB denotes suggest
T12779 660-668 NN denotes findings
T12778 654-659 DT denotes These
T12777 651-652 -RRB- denotes )
T12776 650-651 CD denotes 1
T12775 643-649 NN denotes Figure
T12774 642-643 -LRB- denotes (
T12773 638-641 NN denotes dpc
T12772 633-637 CD denotes 18.5
T12771 630-632 IN denotes at
T12770 622-629 VB denotes observe
T12769 619-621 PRP denotes we
T12768 614-618 WP denotes what
T12767 611-613 TO denotes to
T12766 603-610 JJ denotes similar
T12765 601-602 -COMMA- denotes ,
T12764 600-601 -RRB- denotes )
T12763 596-600 NN denotes data
T12762 584-595 JJ denotes unpublished
T12761 583-584 -LRB- denotes (
T12760 580-582 NN denotes WT
T12759 575-579 IN denotes with
T12758 566-574 VB denotes compared
T12757 562-565 NN denotes RNA
T12756 555-561 JJ denotes mutant
T12755 551-554 DT denotes the
T12754 548-550 IN denotes in
T12753 539-547 JJ denotes elevated
T12752 528-538 RB denotes moderately
T12751 523-527 VB denotes were
T12750 516-522 NN denotes levels
T12749 512-515 NN denotes RNA
T12748 505-511 NN denotes globin
T12747 498-504 JJ denotes β-like
T12746 492-497 JJ denotes adult
T12745 490-491 -COMMA- denotes ,
T12744 483-490 RB denotes however
T12743 481-482 -COLON- denotes ;
T12742 479-481 NN denotes WT
T12741 475-478 CC denotes and
T12740 468-474 JJ denotes mutant
T12739 465-467 IN denotes in
T12738 460-464 CC denotes both
T12737 447-459 JJ denotes undetectable
T12736 442-446 VB denotes were
T12735 438-441 NN denotes RNA
T12734 434-437 NN denotes βh1
T12733 430-433 CC denotes and
T12732 428-429 NN denotes ζ
T12731 425-427 IN denotes of
T12730 418-424 NN denotes levels
T12729 414-417 DT denotes the
T12728 412-413 -COMMA- denotes ,
T12727 401-412 NN denotes development
T12726 398-400 IN denotes in
T12725 392-397 NN denotes point
T12724 387-391 DT denotes this
T12723 384-386 IN denotes At
T12722 378-382 NN denotes mice
T12721 370-377 NN denotes control
T12720 367-369 NN denotes WT
T12719 364-366 IN denotes in
T12718 360-363 NN denotes RNA
T12717 357-359 JJ denotes ɛy
T12716 344-356 JJ denotes undetectable
T12715 339-343 IN denotes with
T12714 330-338 VB denotes compared
T12713 328-329 -COMMA- denotes ,
T12712 322-328 NN denotes sample
T12711 318-321 NN denotes RNA
T12710 313-317 DT denotes this
T12709 310-312 IN denotes in
T12708 303-309 NN denotes globin
T12707 300-302 JJ denotes ɛy
T12706 297-299 IN denotes of
T12705 290-296 NN denotes levels
T12704 285-289 JJ denotes high
T12703 276-284 VB denotes detected
T12702 272-275 CC denotes and
T12701 261-271 NN denotes expression
T12700 256-260 NN denotes gene
T12699 249-255 NN denotes globin
T12698 245-248 IN denotes for
T12697 240-244 CD denotes 13.5
T12696 236-239 NN denotes day
T12695 226-235 JJ denotes postnatal
T12694 223-225 IN denotes on
T12693 217-222 NN denotes mouse
T12692 210-216 JJ denotes mutant
T12691 208-209 DT denotes a
T12690 203-207 IN denotes from
T12689 199-202 NN denotes RNA
T12688 193-198 NN denotes liver
T12687 190-192 IN denotes of
T12686 183-189 NN denotes sample
T12685 174-182 JJ denotes archived
T12684 167-173 JJ denotes single
T12683 165-166 DT denotes a
T12682 156-164 VB denotes examined
T12681 153-155 PRP denotes We
T12680 150-151 -RRB- denotes ]
T12679 148-150 CD denotes 14
T12678 147-148 -LRB- denotes [
T12677 141-146 NN denotes birth
T12676 135-140 IN denotes after
T12675 132-134 NN denotes wk
T12674 130-131 CD denotes 2
T12673 125-129 IN denotes than
T12672 118-124 JJ denotes longer
T12671 113-117 VB denotes live
T12670 110-112 TO denotes to
T12669 101-109 VB denotes observed
T12668 96-100 VB denotes been
T12667 91-95 VB denotes have
T12666 86-90 NN denotes None
T12665 78-84 RB denotes longer
T12664 70-77 NN denotes survive
T12663 66-69 JJ denotes few
T12662 61-65 JJ denotes rare
T12661 59-60 DT denotes a
T12660 57-58 -COMMA- denotes ,
T12659 53-57 VB denotes born
T12658 47-52 VB denotes being
T12657 41-46 IN denotes after
T12656 36-40 RB denotes just
T12655 32-35 VB denotes die
T12654 27-31 NN denotes mice
T12653 20-26 JJ denotes mutant
T12652 14-19 NN denotes p100H
T12651 9-13 JJ denotes most
T12650 0-8 IN denotes Although
R8533 T12651 T12650 arg2Of most,Although
R8534 T12654 T12652 arg1Of mice,p100H
R8535 T12654 T12653 arg1Of mice,mutant
R8536 T12654 T12655 arg1Of mice,die
R8537 T12654 T12658 arg1Of mice,being
R8538 T12654 T12659 arg2Of mice,born
R8539 T12655 T12650 arg1Of die,Although
R8540 T12655 T12656 arg1Of die,just
R8541 T12655 T12657 arg1Of die,after
R8542 T12655 T12660 arg1Of die,","
R8543 T12655 T12665 arg1Of die,longer
R8544 T12659 T12657 arg2Of born,after
R8545 T12659 T12658 arg2Of born,being
R8546 T12664 T12661 arg1Of survive,a
R8547 T12664 T12662 arg1Of survive,rare
R8548 T12664 T12663 arg1Of survive,few
R8549 T12665 T12664 arg1Of longer,survive
R8550 T12666 T12667 arg1Of None,have
R8551 T12666 T12668 arg1Of None,been
R8552 T12666 T12669 arg2Of None,observed
R8553 T12666 T12671 arg1Of None,live
R8554 T12669 T12667 arg2Of observed,have
R8555 T12669 T12668 arg2Of observed,been
R8556 T12671 T12669 arg3Of live,observed
R8557 T12671 T12670 arg1Of live,to
R8558 T12671 T12676 arg1Of live,after
R8559 T12671 T12678 arg1Of live,[
R8560 T12672 T12673 arg1Of longer,than
R8561 T12674 T12673 arg2Of 2,than
R8562 T12675 T12671 arg2Of wk,live
R8563 T12675 T12672 arg1Of wk,longer
R8564 T12677 T12676 arg2Of birth,after
R8565 T12679 T12678 arg2Of 14,[
R8566 T12680 T12678 arg3Of ],[
R8567 T12681 T12682 arg1Of We,examined
R8568 T12681 T12703 arg1Of We,detected
R8569 T12682 T12702 arg1Of examined,and
R8570 T12686 T12682 arg2Of sample,examined
R8571 T12686 T12683 arg1Of sample,a
R8572 T12686 T12684 arg1Of sample,single
R8573 T12686 T12685 arg1Of sample,archived
R8574 T12686 T12687 arg1Of sample,of
R8575 T12686 T12694 arg1Of sample,on
R8576 T12689 T12687 arg2Of RNA,of
R8577 T12689 T12688 arg1Of RNA,liver
R8578 T12689 T12690 arg1Of RNA,from
R8579 T12693 T12690 arg2Of mouse,from
R8580 T12693 T12691 arg1Of mouse,a
R8581 T12693 T12692 arg1Of mouse,mutant
R8582 T12696 T12694 arg2Of day,on
R8583 T12696 T12695 arg1Of day,postnatal
R8584 T12696 T12697 arg1Of day,13.5
R8585 T12696 T12698 arg1Of day,for
R8586 T12701 T12698 arg2Of expression,for
R8587 T12701 T12699 arg1Of expression,globin
R8588 T12701 T12700 arg1Of expression,gene
R8589 T12703 T12702 arg2Of detected,and
R8590 T12703 T12709 arg1Of detected,in
R8591 T12703 T12713 arg1Of detected,","
R8592 T12703 T12714 arg1Of detected,compared
R8593 T12705 T12703 arg2Of levels,detected
R8594 T12705 T12704 arg1Of levels,high
R8595 T12705 T12706 arg1Of levels,of
R8596 T12708 T12706 arg2Of globin,of
R8597 T12708 T12707 arg1Of globin,ɛy
R8598 T12712 T12709 arg2Of sample,in
R8599 T12712 T12710 arg1Of sample,this
R8600 T12712 T12711 arg1Of sample,RNA
R8601 T12715 T12714 arg2Of with,compared
R8602 T12718 T12715 arg2Of RNA,with
R8603 T12718 T12716 arg1Of RNA,undetectable
R8604 T12718 T12717 arg1Of RNA,ɛy
R8605 T12718 T12719 arg1Of RNA,in
R8606 T12722 T12719 arg2Of mice,in
R8607 T12722 T12720 arg1Of mice,WT
R8608 T12722 T12721 arg1Of mice,control
R8609 T12725 T12723 arg2Of point,At
R8610 T12725 T12724 arg1Of point,this
R8611 T12725 T12726 arg1Of point,in
R8612 T12727 T12726 arg2Of development,in
R8613 T12730 T12729 arg1Of levels,the
R8614 T12730 T12731 arg1Of levels,of
R8615 T12730 T12736 arg1Of levels,were
R8616 T12730 T12737 arg1Of levels,undetectable
R8617 T12732 T12733 arg1Of ζ,and
R8618 T12733 T12731 arg2Of and,of
R8619 T12735 T12733 arg2Of RNA,and
R8620 T12735 T12734 arg1Of RNA,βh1
R8621 T12736 T12723 arg1Of were,At
R8622 T12736 T12728 arg1Of were,","
R8623 T12736 T12743 arg1Of were,;
R8624 T12737 T12736 arg2Of undetectable,were
R8625 T12737 T12739 arg1Of undetectable,in
R8626 T12739 T12738 arg1Of in,both
R8627 T12740 T12741 arg1Of mutant,and
R8628 T12741 T12739 arg2Of and,in
R8629 T12742 T12741 arg2Of WT,and
R8630 T12750 T12746 arg1Of levels,adult
R8631 T12750 T12747 arg1Of levels,β-like
R8632 T12750 T12748 arg1Of levels,globin
R8633 T12750 T12749 arg1Of levels,RNA
R8634 T12750 T12751 arg1Of levels,were
R8635 T12750 T12753 arg1Of levels,elevated
R8636 T12751 T12743 arg2Of were,;
R8637 T12751 T12744 arg1Of were,however
R8638 T12751 T12745 arg1Of were,","
R8639 T12751 T12758 arg1Of were,compared
R8640 T12753 T12751 arg2Of elevated,were
R8641 T12753 T12752 arg1Of elevated,moderately
R8642 T12753 T12754 arg1Of elevated,in
R8643 T12757 T12754 arg2Of RNA,in
R8644 T12757 T12755 arg1Of RNA,the
R8645 T12757 T12756 arg1Of RNA,mutant
R8646 T12759 T12758 arg2Of with,compared
R8647 T12760 T12759 arg2Of WT,with
R8648 T12760 T12761 arg1Of WT,(
R8649 T12760 T12765 arg1Of WT,","
R8650 T12760 T12766 arg1Of WT,similar
R8651 T12763 T12761 arg2Of data,(
R8652 T12763 T12762 arg1Of data,unpublished
R8653 T12764 T12761 arg3Of ),(
R8654 T12766 T12767 arg1Of similar,to
R8655 T12768 T12767 arg2Of what,to
R8656 T12768 T12770 arg2Of what,observe
R8657 T12769 T12770 arg1Of we,observe
R8658 T12770 T12771 arg1Of observe,at
R8659 T12773 T12771 arg2Of dpc,at
R8660 T12773 T12772 arg1Of dpc,18.5
R8661 T12773 T12774 arg1Of dpc,(
R8662 T12775 T12774 arg2Of Figure,(
R8663 T12775 T12776 arg1Of Figure,1
R8664 T12777 T12774 arg3Of ),(
R8665 T12779 T12778 arg1Of findings,These
R8666 T12779 T12780 arg1Of findings,suggest
R8667 T12782 T12783 arg1Of Sox6,continues
R8668 T12782 T12785 arg1Of Sox6,function
R8669 T12782 T12793 arg1Of Sox6,has
R8670 T12783 T12792 arg1Of continues,and
R8671 T12785 T12783 arg2Of function,continues
R8672 T12785 T12784 arg1Of function,to
R8673 T12785 T12787 arg1Of function,to
R8674 T12787 T12786 arg1Of to,postnatally
R8675 T12791 T12787 arg2Of expression,to
R8676 T12791 T12788 arg1Of expression,silence
R8677 T12791 T12789 arg1Of expression,ɛy
R8678 T12791 T12790 arg1Of expression,globin
R8679 T12792 T12780 arg2Of and,suggest
R8680 T12792 T12781 arg1Of and,that
R8681 T12793 T12792 arg2Of has,and
R8682 T12793 T12797 arg1Of has,in
R8683 T12796 T12793 arg2Of function,has
R8684 T12796 T12794 arg1Of function,a
R8685 T12796 T12795 arg1Of function,unique
R8686 T12799 T12797 arg2Of regulation,in
R8687 T12799 T12798 arg1Of regulation,the
R8688 T12799 T12800 arg1Of regulation,of
R8689 T12801 T12800 arg2Of ɛy-globin,of
R8690 T12803 T12802 arg1Of mechanism,The
R8691 T12803 T12804 arg2Of mechanism,by
R8692 T12803 T12805 arg1Of mechanism,which
R8693 T12803 T12813 arg1Of mechanism,remains
R8694 T12803 T12815 arg1Of mechanism,be
R8695 T12803 T12816 arg2Of mechanism,elucidated
R8696 T12806 T12807 arg1Of Sox6,regulates
R8697 T12807 T12804 arg1Of regulates,by
R8698 T12812 T12807 arg2Of genes,regulates
R8699 T12812 T12808 arg1Of genes,the
R8700 T12812 T12809 arg1Of genes,other
R8701 T12812 T12810 arg1Of genes,embryonic
R8702 T12812 T12811 arg1Of genes,globin
R8703 T12816 T12813 arg2Of elucidated,remains
R8704 T12816 T12814 arg1Of elucidated,to
R8705 T12816 T12815 arg2Of elucidated,be

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11536 834-838 Protein denotes Sox6
T11535 800-809 Protein denotes ɛy-globin
T11534 732-741 Protein denotes ɛy globin
T11533 682-686 Protein denotes Sox6
T11532 498-511 Protein denotes β-like globin
T11531 434-437 Protein denotes βh1
T11530 428-429 Protein denotes ζ
T11529 357-359 Protein denotes ɛy
T11528 300-309 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13273 834-838 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T13272 682-686 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T11146 193-198 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T11245 401-412 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T11241 256-271 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T11223 869-875 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11222 803-809 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11221 735-741 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11220 505-511 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11219 303-309 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11218 249-255 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11202 786-796 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-MF

Id Subject Object Predicate Lexical cue
T11573 869-875 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11572 803-809 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11571 735-741 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11570 505-511 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11569 303-309 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11568 249-255 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11185 811-907 Sentence denotes The mechanism by which Sox6 regulates the other embryonic globin genes remains to be elucidated.
T11184 654-810 Sentence denotes These findings suggest that Sox6 continues to function postnatally to silence ɛy globin expression and has a unique function in the regulation of ɛy-globin.
T11183 384-653 Sentence denotes At this point in development, the levels of ζ and βh1 RNA were undetectable both in mutant and WT; however, adult β-like globin RNA levels were moderately elevated in the mutant RNA compared with WT (unpublished data), similar to what we observe at 18.5 dpc (Figure 1).
T11182 153-383 Sentence denotes We examined a single archived sample of liver RNA from a mutant mouse on postnatal day 13.5 for globin gene expression and detected high levels of ɛy globin in this RNA sample, compared with undetectable ɛy RNA in WT control mice.
T11181 86-152 Sentence denotes None have been observed to live longer than 2 wk after birth [14].
T11180 0-85 Sentence denotes Although most p100H mutant mice die just after being born, a rare few survive longer.
T229 0-85 Sentence denotes Although most p100H mutant mice die just after being born, a rare few survive longer.
T230 86-152 Sentence denotes None have been observed to live longer than 2 wk after birth [14].
T231 153-383 Sentence denotes We examined a single archived sample of liver RNA from a mutant mouse on postnatal day 13.5 for globin gene expression and detected high levels of ɛy globin in this RNA sample, compared with undetectable ɛy RNA in WT control mice.
T232 384-653 Sentence denotes At this point in development, the levels of ζ and βh1 RNA were undetectable both in mutant and WT; however, adult β-like globin RNA levels were moderately elevated in the mutant RNA compared with WT (unpublished data), similar to what we observe at 18.5 dpc (Figure 1).
T233 654-810 Sentence denotes These findings suggest that Sox6 continues to function postnatally to silence ɛy globin expression and has a unique function in the regulation of ɛy-globin.
T234 811-907 Sentence denotes The mechanism by which Sox6 regulates the other embryonic globin genes remains to be elucidated.

simple1

Id Subject Object Predicate Lexical cue
T11800 834-838 Protein denotes Sox6
T11799 800-809 Protein denotes ɛy-globin
T11798 732-741 Protein denotes ɛy globin
T11797 682-686 Protein denotes Sox6
T11796 498-511 Protein denotes β-like globin
T11795 434-437 Protein denotes βh1
T11794 428-429 Protein denotes ζ
T11793 357-359 Protein denotes ɛy
T11792 300-309 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15826 839-848 Regulation denotes regulates
T15825 786-796 Regulation denotes regulation
T15824 742-752 Gene_expression denotes expression
T15823 724-731 Negative_regulation denotes silence
T15822 539-547 Positive_regulation denotes elevated
T15821 447-459 Gene_expression denotes undetectable
T15820 290-296 Positive_regulation denotes levels
T15771 834-838 Protein denotes Sox6
T15770 800-809 Protein denotes ɛy-globin
T15769 732-741 Protein denotes ɛy globin
T15768 682-686 Protein denotes Sox6
T15767 498-511 Protein denotes β-like globin
T15766 434-437 Protein denotes βh1
T15765 428-429 Protein denotes ζ
T15764 357-359 Protein denotes ɛy
T15763 300-309 Protein denotes ɛy globin
R11021 T15763 T15820 themeOf ɛy globin,levels
R11023 T15765 T15821 themeOf ζ,undetectable
R11024 T15767 T15822 themeOf β-like globin,elevated
R11026 T15768 T15823 causeOf Sox6,silence
R11027 T15769 T15824 themeOf ɛy globin,expression
R11028 T15770 T15825 themeOf ɛy-globin,regulation
R11030 T15771 T15826 themeOf Sox6,regulates
R11065 T15824 T15823 themeOf expression,silence

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13412 839-848 Regulation denotes regulates
T13411 786-796 Regulation denotes regulation
T13410 724-731 Negative_regulation denotes silence
T13409 742-752 Gene_expression denotes expression
T13408 539-547 Positive_regulation denotes elevated
T13361 834-838 Protein denotes Sox6
T13360 800-809 Protein denotes ɛy-globin
T13359 732-741 Protein denotes ɛy globin
T13358 682-686 Protein denotes Sox6
T13357 498-511 Protein denotes β-like globin
T13356 434-437 Protein denotes βh1
T13355 428-429 Protein denotes ζ
T13354 357-359 Protein denotes ɛy
T13353 300-309 Protein denotes ɛy globin
R9191 T13357 T13408 themeOf β-like globin,elevated
R9195 T13358 T13410 causeOf Sox6,silence
R9196 T13359 T13409 themeOf ɛy globin,expression
R9197 T13360 T13411 themeOf ɛy-globin,regulation
R9198 T13361 T13412 themeOf Sox6,regulates
R9236 T13409 T13410 themeOf expression,silence

DLUT931

Id Subject Object Predicate Lexical cue
T13672 724-731 Negative_regulation denotes silence
T13671 786-796 Regulation denotes regulation
T13670 742-752 Gene_expression denotes expression
T13669 539-547 Positive_regulation denotes elevated
T13668 285-289 Positive_regulation denotes high
T13607 834-838 Protein denotes Sox6
T13606 800-809 Protein denotes ɛy-globin
T13605 732-741 Protein denotes ɛy globin
T13604 682-686 Protein denotes Sox6
T13603 498-511 Protein denotes β-like globin
T13602 434-437 Protein denotes βh1
T13601 428-429 Protein denotes ζ
T13600 357-359 Protein denotes ɛy
T13599 300-309 Protein denotes ɛy globin
R9347 T13670 T13672 themeOf expression,silence
R9357 T13599 T13668 themeOf ɛy globin,high
R9358 T13603 T13669 themeOf β-like globin,elevated
R9360 T13604 T13672 causeOf Sox6,silence
R9363 T13605 T13670 themeOf ɛy globin,expression
R9366 T13606 T13671 themeOf ɛy-globin,regulation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15691 190-203 Localization denotes of liver RNA
T15676 782-809 Regulation denotes the regulation of ɛy-globin
T15600 492-522 Protein denotes adult β-like globin RNA levels
T15599 849-881 Protein denotes the other embryonic globin genes
T15592 9-31 Protein denotes most p100H mutant mice
T15587 300-309 Protein denotes ɛy globin
T15577 512-515 Protein denotes RNA
T15568 682-686 Protein denotes Sox6
T15564 339-382 Protein denotes with undetectable ɛy RNA in WT control mice
T15538 551-565 Protein denotes the mutant RNA
T15531 434-441 Protein denotes βh1 RNA
T15526 834-838 Protein denotes Sox6
T15521 724-752 Protein denotes silence ɛy globin expression
T15510 428-429 Protein denotes ζ
T15509 849-881 Protein denotes the other embryonic globin genes
T15502 869-875 Protein denotes globin
T15500 797-809 Protein denotes of ɛy-globin
T15486 367-382 Protein denotes WT control mice
T15484 249-255 Protein denotes globin
T15474 735-741 Protein denotes globin
T15454 434-437 Protein denotes βh1
T15673 249-271 Gene_expression denotes globin gene expression
T15631 633-652 Entity denotes 18.5 dpc (Figure 1)
T15614 313-329 Protein denotes this RNA sample,
T15612 357-359 Protein denotes ɛy
T15610 190-202 Protein denotes of liver RNA
T15607 797-809 Protein denotes of ɛy-globin
R10979 T15484 T15673 themeOf globin,globin gene expression
R10985 T15500 T15676 themeOf of ɛy-globin,the regulation of ɛy-globin
R10990 T15610 T15691 themeOf of liver RNA,of liver RNA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14801 650-651 CD denotes 1
T14800 643-649 NN denotes Figure
T14799 642-643 -LRB- denotes (
T14798 638-641 NN denotes dpc
T14797 633-637 CD denotes 18.5
T14796 630-632 IN denotes at
T14795 622-629 VBP denotes observe
T14794 619-621 PRP denotes we
T14793 614-618 WP denotes what
T14792 611-613 TO denotes to
T14791 603-610 JJ denotes similar
T14790 601-602 , denotes ,
T14789 600-601 -RRB- denotes )
T14788 596-600 NNS denotes data
T14787 584-595 JJ denotes unpublished
T14786 583-584 -LRB- denotes (
T14785 580-582 NNP denotes WT
T14784 575-579 IN denotes with
T14783 566-574 VBN denotes compared
T14782 562-565 NNP denotes RNA
T14781 555-561 JJ denotes mutant
T14780 551-554 DT denotes the
T14779 548-550 IN denotes in
T14778 539-547 VBN denotes elevated
T14777 528-538 RB denotes moderately
T14776 523-527 VBD denotes were
T14775 516-522 NNS denotes levels
T14774 512-515 NNP denotes RNA
T14773 505-511 NN denotes globin
T14772 498-504 JJ denotes β-like
T14771 492-497 NN denotes adult
T14770 490-491 , denotes ,
T14769 483-490 RB denotes however
T14768 481-482 : denotes ;
T14767 479-481 NNP denotes WT
T14766 475-478 CC denotes and
T14765 468-474 JJ denotes mutant
T14764 465-467 IN denotes in
T14763 460-464 DT denotes both
T14762 447-459 JJ denotes undetectable
T14761 442-446 VBD denotes were
T14760 438-441 NNP denotes RNA
T14759 434-437 CD denotes βh1
T14758 430-433 CC denotes and
T14757 428-429 NN denotes ζ
T14756 425-427 IN denotes of
T14755 418-424 NNS denotes levels
T14754 414-417 DT denotes the
T14753 412-413 , denotes ,
T14752 401-412 NN denotes development
T14751 398-400 IN denotes in
T14750 392-397 NN denotes point
T14749 387-391 DT denotes this
T14748 384-386 IN denotes At
T14747 382-383 . denotes .
T14746 378-382 NNS denotes mice
T14745 370-377 NN denotes control
T14744 367-369 NNP denotes WT
T14743 364-366 IN denotes in
T14742 360-363 NNP denotes RNA
T14741 357-359 NN denotes ɛy
T14740 344-356 JJ denotes undetectable
T14739 339-343 IN denotes with
T14738 330-338 VBN denotes compared
T14737 328-329 , denotes ,
T14736 322-328 NN denotes sample
T14735 318-321 NNP denotes RNA
T14734 313-317 DT denotes this
T14733 310-312 IN denotes in
T14732 303-309 NN denotes globin
T14731 300-302 JJ denotes ɛy
T14730 297-299 IN denotes of
T14729 290-296 NNS denotes levels
T14728 285-289 JJ denotes high
T14727 276-284 VBD denotes detected
T14726 272-275 CC denotes and
T14725 261-271 NN denotes expression
T14724 256-260 NN denotes gene
T14723 249-255 NN denotes globin
T14722 245-248 IN denotes for
T14721 240-244 CD denotes 13.5
T14720 236-239 NN denotes day
T14719 226-235 JJ denotes postnatal
T14718 223-225 IN denotes on
T14717 217-222 NN denotes mouse
T14716 210-216 JJ denotes mutant
T14715 208-209 DT denotes a
T14714 203-207 IN denotes from
T14713 199-202 NNP denotes RNA
T14712 193-198 NN denotes liver
T14711 190-192 IN denotes of
T14710 183-189 NN denotes sample
T14709 174-182 JJ denotes archived
T14708 167-173 JJ denotes single
T14707 165-166 DT denotes a
T14706 156-164 VBD denotes examined
T14705 153-155 PRP denotes We
T14704 151-152 . denotes .
T14703 150-151 NNP denotes ]
T14702 148-150 CD denotes 14
T14701 147-148 NNP denotes [
T14700 141-146 NN denotes birth
T14699 135-140 IN denotes after
T14698 132-134 NN denotes wk
T14697 130-131 CD denotes 2
T14696 125-129 IN denotes than
T14695 118-124 JJR denotes longer
T14694 113-117 VB denotes live
T14693 110-112 TO denotes to
T14692 101-109 VBN denotes observed
T14691 96-100 VBN denotes been
T14690 91-95 VBP denotes have
T14689 86-90 NN denotes None
T14688 84-85 . denotes .
T14687 78-84 RBR denotes longer
T14686 70-77 VBP denotes survive
T14685 66-69 JJ denotes few
T14684 61-65 JJ denotes rare
T14683 59-60 DT denotes a
T14682 57-58 , denotes ,
T14681 53-57 VBN denotes born
T14680 47-52 VBG denotes being
T14679 41-46 IN denotes after
T14678 36-40 RB denotes just
T14677 32-35 VBP denotes die
T14676 27-31 NNS denotes mice
T14675 20-26 JJ denotes mutant
T14674 14-19 JJ denotes p100H
T14673 9-13 JJS denotes most
T14672 0-8 IN denotes Although
T14844 906-907 . denotes .
T14843 896-906 VBN denotes elucidated
T14842 893-895 VB denotes be
T14841 890-892 TO denotes to
T14840 882-889 VBZ denotes remains
T14839 876-881 NNS denotes genes
T14838 869-875 NN denotes globin
T14837 859-868 JJ denotes embryonic
T14836 853-858 JJ denotes other
T14835 849-852 DT denotes the
T14834 839-848 VBZ denotes regulates
T14833 834-838 NNP denotes Sox6
T14832 828-833 WDT denotes which
T14831 825-827 IN denotes by
T14830 815-824 NN denotes mechanism
T14829 811-814 DT denotes The
T14828 809-810 . denotes .
T14827 800-809 NN denotes ɛy-globin
T14826 797-799 IN denotes of
T14825 786-796 NN denotes regulation
T14824 782-785 DT denotes the
T14823 779-781 IN denotes in
T14822 770-778 NN denotes function
T14821 763-769 JJ denotes unique
T14820 761-762 DT denotes a
T14819 757-760 VBZ denotes has
T14818 753-756 CC denotes and
T14817 742-752 NN denotes expression
T14816 735-741 NN denotes globin
T14815 732-734 NN denotes ɛy
T14814 724-731 NN denotes silence
T14813 721-723 TO denotes to
T14812 709-720 RB denotes postnatally
T14811 700-708 VB denotes function
T14810 697-699 TO denotes to
T14809 687-696 VBZ denotes continues
T14808 682-686 JJ denotes Sox6
T14807 677-681 IN denotes that
T14806 669-676 VBP denotes suggest
T14805 660-668 NNS denotes findings
T14804 654-659 DT denotes These
T14803 652-653 . denotes .
T14802 651-652 -RRB- denotes )
R10274 T14754 T14755 det the,levels
R10276 T14755 T14761 nsubj levels,were
R10277 T14756 T14755 prep of,levels
R10278 T14757 T14756 pobj ζ,of
R10280 T14758 T14757 cc and,ζ
R10281 T14759 T14760 nummod βh1,RNA
R10282 T14760 T14757 conj RNA,ζ
R10284 T14761 T14778 ccomp were,elevated
R10285 T14762 T14761 acomp undetectable,were
R10287 T14763 T14764 advmod both,in
R10288 T14764 T14762 prep in,undetectable
R10289 T14672 T14677 mark Although,die
R10290 T14765 T14764 pobj mutant,in
R10291 T14766 T14765 cc and,mutant
R10292 T14767 T14765 conj WT,mutant
R10293 T14673 T14676 amod most,mice
R10294 T14768 T14778 punct ;,elevated
R10295 T14769 T14778 advmod however,elevated
R10296 T14770 T14778 punct ",",elevated
R10297 T14674 T14676 amod p100H,mice
R10298 T14771 T14775 nmod adult,levels
R10299 T14772 T14775 amod β-like,levels
R10300 T14773 T14775 compound globin,levels
R10301 T14675 T14676 amod mutant,mice
R10302 T14774 T14775 compound RNA,levels
R10303 T14775 T14776 nsubj levels,were
R10304 T14676 T14677 nsubj mice,die
R10305 T14677 T14686 advcl die,survive
R10306 T14776 T14778 auxpass were,elevated
R10307 T14678 T14679 advmod just,after
R10308 T14777 T14778 advmod moderately,elevated
R10309 T14778 T14778 ROOT elevated,elevated
R10310 T14779 T14778 prep in,elevated
R10311 T14679 T14677 prep after,die
R10312 T14780 T14782 det the,RNA
R10313 T14781 T14782 amod mutant,RNA
R10314 T14782 T14779 pobj RNA,in
R10315 T14783 T14778 prep compared,elevated
R10316 T14784 T14783 prep with,compared
R10317 T14680 T14681 auxpass being,born
R10318 T14785 T14784 pobj WT,with
R10319 T14786 T14785 punct (,WT
R10320 T14681 T14679 pcomp born,after
R10321 T14787 T14788 amod unpublished,data
R10322 T14788 T14785 appos data,WT
R10323 T14789 T14785 punct ),WT
R10324 T14682 T14686 punct ",",survive
R10325 T14790 T14785 punct ",",WT
R10326 T14791 T14778 conj similar,elevated
R10327 T14683 T14686 det a,survive
R10328 T14792 T14791 prep to,similar
R10329 T14793 T14795 dobj what,observe
R10330 T14794 T14795 nsubj we,observe
R10331 T14684 T14686 amod rare,survive
R10332 T14795 T14792 pcomp observe,to
R10333 T14796 T14795 prep at,observe
R10334 T14797 T14798 nummod 18.5,dpc
R10335 T14685 T14686 nsubj few,survive
R10336 T14798 T14796 pobj dpc,at
R10337 T14799 T14800 punct (,Figure
R10338 T14800 T14792 pobj Figure,to
R10339 T14686 T14686 ROOT survive,survive
R10340 T14801 T14800 nummod 1,Figure
R10341 T14802 T14800 punct ),Figure
R10342 T14803 T14778 punct .,elevated
R10343 T14687 T14686 advmod longer,survive
R10344 T14804 T14805 det These,findings
R10345 T14805 T14806 nsubj findings,suggest
R10346 T14806 T14806 ROOT suggest,suggest
R10347 T14807 T14809 mark that,continues
R10348 T14688 T14686 punct .,survive
R10349 T14808 T14809 nsubj Sox6,continues
R10350 T14809 T14806 ccomp continues,suggest
R10351 T14810 T14811 aux to,function
R10352 T14689 T14692 nsubjpass None,observed
R10353 T14811 T14809 xcomp function,continues
R10354 T14812 T14811 advmod postnatally,function
R10355 T14690 T14692 aux have,observed
R10356 T14813 T14811 prep to,function
R10357 T14814 T14817 nmod silence,expression
R10358 T14815 T14817 nmod ɛy,expression
R10359 T14691 T14692 auxpass been,observed
R10360 T14816 T14817 compound globin,expression
R10361 T14817 T14813 pobj expression,to
R10362 T14818 T14809 cc and,continues
R10363 T14692 T14692 ROOT observed,observed
R10364 T14819 T14809 conj has,continues
R10365 T14820 T14822 det a,function
R10366 T14821 T14822 amod unique,function
R10367 T14822 T14819 dobj function,has
R10368 T14823 T14822 prep in,function
R10369 T14824 T14825 det the,regulation
R10370 T14693 T14694 aux to,live
R10371 T14825 T14823 pobj regulation,in
R10372 T14826 T14825 prep of,regulation
R10373 T14827 T14826 pobj ɛy-globin,of
R10374 T14694 T14692 xcomp live,observed
R10375 T14828 T14806 punct .,suggest
R10376 T14829 T14830 det The,mechanism
R10377 T14830 T14840 nsubj mechanism,remains
R10378 T14695 T14698 amod longer,wk
R10379 T14831 T14834 prep by,regulates
R10380 T14832 T14831 pobj which,by
R10381 T14696 T14698 quantmod than,wk
R10382 T14833 T14834 nsubj Sox6,regulates
R10383 T14834 T14830 relcl regulates,mechanism
R10384 T14697 T14698 nummod 2,wk
R10385 T14835 T14839 det the,genes
R10386 T14836 T14839 amod other,genes
R10387 T14837 T14839 amod embryonic,genes
R10388 T14698 T14694 dobj wk,live
R10389 T14838 T14839 compound globin,genes
R10390 T14839 T14834 dobj genes,regulates
R10391 T14840 T14840 ROOT remains,remains
R10392 T14699 T14694 prep after,live
R10393 T14841 T14843 aux to,elucidated
R10394 T14842 T14843 auxpass be,elucidated
R10395 T14843 T14840 xcomp elucidated,remains
R10396 T14700 T14703 nsubjpass birth,]
R10397 T14844 T14840 punct .,remains
R10400 T14701 T14703 nmod [,]
R10404 T14702 T14703 nummod 14,]
R10406 T14703 T14699 pobj ],after
R10407 T14704 T14692 punct .,observed
R10408 T14705 T14706 nsubj We,examined
R10410 T14706 T14706 ROOT examined,examined
R10414 T14707 T14710 det a,sample
R10415 T14708 T14710 amod single,sample
R10417 T14709 T14710 amod archived,sample
R10420 T14710 T14706 dobj sample,examined
R10423 T14711 T14710 prep of,sample
R10427 T14712 T14713 compound liver,RNA
R10429 T14713 T14711 pobj RNA,of
R10433 T14714 T14710 prep from,sample
R10436 T14715 T14717 det a,mouse
R10439 T14716 T14717 amod mutant,mouse
R10443 T14717 T14714 pobj mouse,from
R10447 T14718 T14717 prep on,mouse
R10451 T14719 T14720 amod postnatal,day
R10455 T14720 T14718 pobj day,on
R10458 T14721 T14720 nummod 13.5,day
R10462 T14722 T14710 prep for,sample
R10469 T14723 T14725 amod globin,expression
R10472 T14724 T14725 compound gene,expression
R10476 T14725 T14722 pobj expression,for
R10480 T14726 T14706 cc and,examined
R10483 T14727 T14706 conj detected,examined
R10487 T14728 T14729 amod high,levels
R10488 T14729 T14727 dobj levels,detected
R10489 T14730 T14729 prep of,levels
R10491 T14731 T14732 amod ɛy,globin
R10495 T14732 T14730 pobj globin,of
R10498 T14733 T14727 prep in,detected
R10502 T14734 T14736 det this,sample
R10506 T14735 T14736 compound RNA,sample
R10510 T14736 T14733 pobj sample,in
R10513 T14737 T14727 punct ",",detected
R10519 T14738 T14727 prep compared,detected
R10523 T14739 T14738 prep with,compared
R10526 T14740 T14742 amod undetectable,RNA
R10527 T14741 T14742 compound ɛy,RNA
R10529 T14742 T14739 pobj RNA,with
R10532 T14743 T14742 prep in,RNA
R10536 T14744 T14745 compound WT,control
R10539 T14745 T14746 compound control,mice
R10543 T14746 T14743 pobj mice,in
R10545 T14747 T14706 punct .,examined
R10546 T14748 T14761 prep At,were
R10547 T14749 T14750 det this,point
R10549 T14750 T14748 pobj point,At
R10552 T14751 T14750 prep in,point
R10554 T14752 T14751 pobj development,in
R10555 T14753 T14761 punct ",",were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13503 839-848 Regulation denotes regulates
T13502 869-881 Protein denotes globin genes
T13501 834-838 Protein denotes Sox6
T13500 724-731 Negative_regulation denotes silence
T13499 786-796 Regulation denotes regulation
T13498 742-752 Gene_expression denotes expression
T13497 800-809 Protein denotes ɛy-globin
T13496 735-741 Protein denotes globin
T13495 682-686 Protein denotes Sox6
T13494 539-547 Positive_regulation denotes elevated
T13493 447-459 Positive_regulation denotes undetectable
T13492 505-515 Protein denotes globin RNA
T13491 428-441 Protein denotes ζ and βh1 RNA
T13490 290-296 Positive_regulation denotes levels
T13489 261-271 Gene_expression denotes expression
T13488 300-309 Protein denotes ɛy globin
T13487 249-260 Protein denotes globin gene
R9250 T13487 T13489 themeOf globin gene,expression
R9251 T13488 T13490 themeOf ɛy globin,levels
R9252 T13491 T13493 themeOf ζ and βh1 RNA,undetectable
R9253 T13492 T13494 themeOf globin RNA,elevated
R9255 T13495 T13500 causeOf Sox6,silence
R9257 T13496 T13498 themeOf globin,expression
R9258 T13497 T13499 themeOf ɛy-globin,regulation
R9259 T13498 T13500 themeOf expression,silence
R9262 T13501 T13503 causeOf Sox6,regulates
R9263 T13502 T13503 themeOf globin genes,regulates

testone

Id Subject Object Predicate Lexical cue
T10853 834-838 Protein denotes Sox6
T10852 800-809 Protein denotes ɛy-globin
T10851 732-741 Protein denotes ɛy globin
T10850 682-686 Protein denotes Sox6
T10849 498-511 Protein denotes β-like globin
T10848 434-437 Protein denotes βh1
T10847 428-429 Protein denotes ζ
T10846 357-359 Protein denotes ɛy
T10845 300-309 Protein denotes ɛy globin
T10915 786-796 Regulation denotes regulation
T10914 742-752 Gene_expression denotes expression
T10913 724-731 Negative_regulation denotes silence
T10912 539-547 Positive_regulation denotes elevated
T10911 261-271 Gene_expression denotes expression
R7472 T10849 T10912 themeOf β-like globin,elevated
R7473 T10850 T10913 causeOf Sox6,silence
R7474 T10851 T10914 themeOf ɛy globin,expression
R7475 T10852 T10915 themeOf ɛy-globin,regulation
R7490 T10914 T10913 themeOf expression,silence

test3

Id Subject Object Predicate Lexical cue
T11124 834-838 Protein denotes Sox6
T11123 800-809 Protein denotes ɛy-globin
T11122 742-752 Gene_expression denotes expression
T11121 732-741 Protein denotes ɛy globin
T11120 682-686 Protein denotes Sox6
T11119 539-547 Positive_regulation denotes elevated
T11118 498-511 Protein denotes β-like globin
T11117 434-437 Protein denotes βh1
T11116 428-429 Protein denotes ζ
T11115 357-359 Protein denotes ɛy
T11114 300-309 Protein denotes ɛy globin
T10998 834-838 Protein denotes Sox6
T10997 800-809 Protein denotes ɛy-globin
T10996 732-741 Protein denotes ɛy globin
T10995 682-686 Protein denotes Sox6
T10994 498-511 Protein denotes β-like globin
T10993 434-437 Protein denotes βh1
T10992 428-429 Protein denotes ζ
T10991 357-359 Protein denotes ɛy
T10990 300-309 Protein denotes ɛy globin
R7533 T11121 T11122 themeOf ɛy globin,expression
R7534 T11123 T11120 themeOf ɛy-globin,Sox6